ID: uc011mlr.1_intron_1_0_chrX_47442936_f.3p
GENE: TIMP1(2)
chrX:47444135-47444384+


(1)
B-CELL 		(1)
BRAIN 		(13)
BREAST 		(5)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(2)
HELA 		(7)
LIVER 		(1)
OTHER 		(6)
SKIN

Sense strand
AAGCAGTGCCCGGCAAAGAGAGACACTCAACATACAGATGAATCAATGAACAAATGTGTAAATCACTTTGTGTGCTGTCTGGCATCCAATAACCCCTATTTATGTATGCGCTTTGCTGGTATGATGATGATGATGATGATGATCTTATTTTTATTGGCTCATGCAGTCCATTTGACTCATATTTCCCTCCTCTCCTGCAGTCATCAGGGCCAAGTTCGTGGGGACACCAGAAGTCAACCAGACCACCTTA
......................................................................................................................((((((...((((((.(((((.....))))).))))))..)))))).(((.....)))..........................................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343335SRR343334SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)
.........................................................................................................................TGATGATGATGATGATGATGAGCGA........................................................................................................2562.000.0021.0017.0011.008.00----1.00-------1.00-------1.00------1.00--1.00--------
.........................................................................................................................TGATGATGATGATGATGATGATCCA........................................................................................................255.000.00--3.00-----------1.00--------------1.00-------------
.........................................................................................................................TGATGATGATGATGATGATGAGCGC........................................................................................................254.000.003.001.00-----------------------------------------
...........................................................................................................................................................................................................................GGGGACACCAGAAGTCAAC............1913.003.00-------2.00---------1.00-------------------------
...................................................................................................................................................................................................................................CAGAAGTCAACCAGACCACC...2012.002.00----1.00-------------------------------------1.00
.............................................................................................................................................................................................................AGGGCCAAGTTCGTGGGGACACC......................2312.002.00----1.00----------------------1.00---------------
...................................................................................................................................................................................................................AAGTTCGTGGGGACACCA.....................1812.002.00------2.00------------------------------------
................................................................................................................................................................................................................GCCAAGTTCGTGGGGACACCAGAAGTC...............2712.002.00----1.00-1.00------------------------------------
.........................................................................................................................TGATGATGATGATGATGATGAGCAA........................................................................................................251.000.00----------------------------1.00--------------
.......................................................................................................GTATGCGCTTTGCTGAGG.................................................................................................................................181.000.00---------------1.00---------------------------
...............................................................................................................................................................................................................GGCCAAGTTCGTGGGGACACCAGAAGT................2711.001.00-----1.00-------------------------------------
.......................................................................................................................................................................................................................TCGTGGGGACACCAGAAGTCAA.............2211.001.00-----1.00-------------------------------------
................................................................................................................................................................................................................GCCAAGTTCGTGGGGAC.........................1711.001.00---------------------------------1.00---------
...................................................................................................................................................................................................................AAGTTCGTGGGGACACCAGAAGTCAACCAG.........3011.001.00-------------------1.00-----------------------
...............................................................................................................................................................................CTCATATTTCCCTCCTCTCCTGC....................................................2311.001.00-----------------------------------1.00-------
.........................................................................................................................................................................................................................GTGGGGACACCAGAAGTCG..............191.000.00--------------------1.00----------------------
..........................................................................................................................................................................................................................TGGGGACACCAGAAGATGA.............191.000.00------------------------------1.00------------
.............................................................................................................................................................................................................................GGACACCAGAAGTCAACCAGACC......2311.001.00-----1.00-------------------------------------
...........................................................................................................................................................................................................................GGGGACACCAGAAGTCAATC...........2011.001.00-------------1.00-----------------------------
..............................................................................................................................................................................................................GGGCCAAGTTCGTGGGGACACCAGAAGTC...............2911.001.00------1.00------------------------------------
.............................................................................................................................................................................................................AGGGCCAAGTTCGTGGGGAT.........................201.000.00-----------------------1.00-------------------
....................................................................................................................................................................................................................AGTTCGTGGGGACACCAGA...................1911.001.00------------1.00------------------------------
.......................................................................................................................................................................................................................TCGTGGGGACACCAGAAGTCAACCAG.........2611.001.00-----1.00-------------------------------------
...........................................................................................................................................................................................................................GGGGACACCAGAAGTCAA.............1811.001.00----------1.00--------------------------------
................................................................................................................................................................................................................GCCAAGTTCGTGGGGACACCA.....................2111.001.00---------1.00---------------------------------
............................................................................................................................TGATGATGATGATGATGATCAAA.......................................................................................................231.000.00--------------------------------------1.00----
.........................................................................................................................TGATGATGATGATGATGATGAGCTA........................................................................................................251.000.00--------------------------------1.00----------
..................................................................................................................................................................................................................CAAGTTCGTGGGGACACCAGTC..................221.000.00----1.00--------------------------------------
.................................................................................................................................................................................................................CCAAGTTCGTGGGGACACC......................1911.001.00----------------------------------------1.00--
.................................ACAGATGAATCAATGTACG......................................................................................................................................................................................................191.000.00-----------------------------------------1.00-
...............................................................................................................................TGATGATGATGATGATCGCTG......................................................................................................211.000.00--------------------------1.00----------------
...........................................................................................................................................................................................................................GGGGACACCAGAAGTCAACC...........2011.001.00------1.00------------------------------------
.........................................................................................................................TGATGATGATGATGATGATGATCGCC.......................................................................................................261.000.001.00------------------------------------------
......................................................................................................................................GATGATGATCTTATTGGC..................................................................................................181.000.00-----------1.00-------------------------------
..........................................................................................................................................................................................................................TGGGGACACCAGAAGTCAACC...........2111.001.00-------1.00-----------------------------------
........................................................................................................................ATGATGATGATGATGATGATGTCCA.........................................................................................................251.000.00------------------1.00------------------------
........................................................................................................................................................................................................................CGTGGGGACACCAGAAGTCAACC...........2311.001.00---------1.00---------------------------------
.............................................................................................................................................................................................................................GGACACCAGAAGTCAACCAGATA......231.000.00-----1.00-------------------------------------
........................................................................................................................................................................................................................CGTGGGGACACCAGAAGTC...............1911.001.00----1.00--------------------------------------
...........................................................................................................................................................................................................................GGGGACACCAGAAGTCAACCA..........2111.001.00----1.00--------------------------------------
...................................................................................................................................................................................................................AAGTTCGTGGGGACACCAG....................1911.001.00------1.00------------------------------------
.........................................................................................................................TGATGATGATGATGATGATGAGAGA........................................................................................................251.000.00-------------------------------------1.00-----
..........................................................................................................................................................................................................................TGGGGACACCAGAAGTCACCC...........211.000.00----1.00--------------------------------------
...........................................................................................................................................................................................................TCAGGGCCAAGTTCGTGGGGACACC......................2511.001.00-----1.00-------------------------------------
.........................................................................................................................................................................................................................GTGGGGACACCAGAAGTCAACC...........2211.001.00----------1.00--------------------------------
.....................................................................................................................................................................................................................GTTCGTGGGGACACCAGAAGTC...............2211.001.00----1.00--------------------------------------

Antisense strand
AAGCAGTGCCCGGCAAAGAGAGACACTCAACATACAGATGAATCAATGAACAAATGTGTAAATCACTTTGTGTGCTGTCTGGCATCCAATAACCCCTATTTATGTATGCGCTTTGCTGGTATGATGATGATGATGATGATGATCTTATTTTTATTGGCTCATGCAGTCCATTTGACTCATATTTCCCTCCTCTCCTGCAGTCATCAGGGCCAAGTTCGTGGGGACACCAGAAGTCAACCAGACCACCTTA
......................................................................................................................((((((...((((((.(((((.....))))).))))))..)))))).(((.....)))..........................................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343335SRR343334SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)
........................................................................................................................................................................................CTGATGACTGCAGGAGAGGAGGG........................................... 2311.001.00---------------------1.00---------------------
......................TCTGTATGTTGAGTGT.................................................................................................................................................................................................................... 1611.001.00------------------------------------1.00------
............................................................................................................................TGATGATGATGATGATGATCCAGA...................................................................................................... 241.000.00----------------------1.00--------------------
.......................................................................................................................CATCATCATCATCATCATCATA............................................................................................................. 2201.001.00--------1.00----------------------------------
......................GATTCATCTGTATGTTGAGTGT.............................................................................................................................................................................................................. 2211.001.00---------------------------------------1.00---
.......................................................................................................................CATCATCATCATCATCATA................................................................................................................ 1901.001.00--------1.00----------------------------------
......................ATCTGTATGTTGAGTGT................................................................................................................................................................................................................... 1711.001.00-------------------------1.00-----------------
............................................................................................................................................................................................................ACGAACTTGGCCCTG............................... 1520.500.50---0.50---------------------------------------