ID: uc011mel.1_intron_26_0_chr9_139910324_r
GENE: (22)
chr9:139910274-139910463-


(3)
AGO2.ip 		(3)
B-CELL 		(8)
BRAIN 		(9)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(2)
HELA 		(8)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
TCACGGCTCAAGAGCATGGCTCAGGAGGAGATCCGCAGAGAGATGGACAAGTGGGTGGGCTGGGCGGGGGGCGGGGCAGGTGGGCGGAGGCCCTGGGGCTCTGCATAGCAGCAGCCCCATGCCCCACCTCCCTGTCCCAGGATGATCGAGGACCTGGAGCTCTCCAACAAACGGCACTCACTGGTGCAGA
...........................................................((((((((((((.((((((...((((....)))).((((((((((...)))).)))))).)))))).)).))))).)))))..................................................
..................................................51.......................................................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
.......................................................................................................................TGCCCCACCTCCCTGTCCCAGT.................................................2216.002.001.001.00---2.00-----------------------------1.00-----------------1.00---------
.................................CGCAGAGAGATGGACAA............................................................................................................................................1714.004.00-----------1.00-------1.00------------------1.00-----------------1.00------
......................................................................................................................ATGCCCCACCTCCCTGTCCCAGAA................................................2414.001.00--4.00------------------------------------------------------------
......................................................GTGGGCTGGGCGGGGCGTT.....................................................................................................................194.000.00---4.00-----------------------------------------------------------
.......................................................................................................................TGCCCCACCTCCCTGTCCCAGA.................................................2213.002.00------------------------1.00-----------------------1.00------------1.00-
............................................................................................................................................GATGATCGAGGACCTGGAGCTCTCC.........................2513.003.00------3.00--------------------------------------------------------
.......................................................................................................................TGCCCCACCTCCCTGTCCCAG..................................................2112.002.00---------------------1.00--------------1.00--------------------------
......................AGGAGGAGATCCGCAGAGAGATGGACA.............................................................................................................................................2712.002.00-------2.00-------------------------------------------------------
...................................CAGAGAGATGGACAAGATG........................................................................................................................................192.000.00-------------2.00-------------------------------------------------
................................................................CGGGGGGCGGGGCAGACT............................................................................................................182.000.00--------------------------------1.001.00-----------------------------
....................................................................................................................................................AGGACCTGGAGCTCTCCAACAAACGGC...............2712.002.00-1.00-------------------------------------------------------1.00-----
.............................................................................................................................................................AGCTCTCCAACAAACGGCA..............1912.002.00--------2.00------------------------------------------------------
................................................................CGGGGGGCGGGGCAGACTG...........................................................................................................192.000.00------------------1.00----------------------------------------1.00---
......................AGGAGGAGATCCGCAGAGAGATGGACAA............................................................................................................................................2812.002.00------------1.00---1.00----------------------------------------------
...........................................................CTGGGCGGGGGGCGGGGCGG...............................................................................................................202.000.00----------------------------------1.00-----1.00----------------------
.......................................................................................................................TGCCCCACCTCCCTGTCCCA...................................................2012.002.00---------------------------------------1.00--1.00--------------------
.........................................................................................GCCCTGGGGCTCTGCATAGC.................................................................................2011.001.001.00--------------------------------------------------------------
..................................GCAGAGAGATGGACAAGATG........................................................................................................................................201.000.00-----------------1.00---------------------------------------------
..........................................................................................................................CCCACCTCCCTGTCCCAGA.................................................191.000.00-----1.00---------------------------------------------------------
.......................................................................................................................TGCCCCACCTCCCTGTCCCAGC.................................................2211.002.00----------1.00----------------------------------------------------
....................................................................................................................................................AGGACCTGGAGCTCTCCAACAAACGG................2611.001.00---------------1.00-----------------------------------------------
.................GGCTCAGGAGGAGATCCGCAGAGAGATGGACAA............................................................................................................................................3311.001.001.00--------------------------------------------------------------
.......................................................................................................................TGCCCCACCTCCCTGTCCCAGTT................................................2311.002.00------------------------------------------------------------1.00--
....................................AGAGAGATGGACAAGATAT.......................................................................................................................................191.000.00---------------1.00-----------------------------------------------
...............ATGGCTCAGGAGGAGATCCGCAGAGAGATGGA...............................................................................................................................................3211.001.001.00--------------------------------------------------------------
...CGGCTCAAGAGCATGGCTCAGGAGGA.................................................................................................................................................................2611.001.00-----------------------------1.00---------------------------------
......................................................................................................................ATGCCCCACCTCCCTGTCCCAGT.................................................2311.001.00-----------1.00---------------------------------------------------
..............................ATCCGCAGAGAGATGGACAAGA..........................................................................................................................................221.000.00------------------------------1.00--------------------------------
................................................................................................................................................ATCGAGGACCTGGAGCTCTCCAACA.....................2511.001.00-------------------------1.00-------------------------------------
......................................................................................................................ATGCCCCACCTCCCTGTCCCAG..................................................2211.001.00---------1.00-----------------------------------------------------
............................................................................................CTGGGGCTCTGCATAGCAGCA.............................................................................2111.001.00-------------------1.00-------------------------------------------
............................................................................................................................................GATGATCGAGGACCTGGAGC..............................2011.001.00-1.00-------------------------------------------------------------
.........................................................GGCTGGGCGGGGGGCGA....................................................................................................................171.000.00----1.00----------------------------------------------------------
.....................................................................................................................CATGCCCCACCTCCCTGTCCCAGT.................................................241.000.00------------------1.00--------------------------------------------
...................................................................................................................................................GAGGACCTGGAGCTCTCCAACAAACGGCACT............3111.001.001.00--------------------------------------------------------------
.....................................................................................................................................................................AACAAACGGCACTCACTGG......1911.001.00---------------------1.00-----------------------------------------
........................GAGGAGATCCGCAGAGAGATGGACA.............................................................................................................................................2511.001.00-------------------------------------1.00-------------------------
.......................................GAGATGGACAAGTGGGTGGGCTG................................................................................................................................2311.001.00------------1.00--------------------------------------------------
........................................................................GGGGCAGGTGGGCGGAGGCCCTG...............................................................................................2311.001.00-----------------------------------------------1.00---------------
..................................................................................................................................................CGAGGACCTGGAGCTCTG..........................181.000.00---------1.00-----------------------------------------------------
...............................................................GCGGGGGGCGGGGCAGGCTG...........................................................................................................201.000.00--------------------1.00------------------------------------------
....................................................................................................................................................AGGACCTGGAGCTCTCCAACAAACGGCA..............2811.001.001.00--------------------------------------------------------------
................................CCGCAGAGAGATGGACAA............................................................................................................................................1811.001.00--------------1.00------------------------------------------------
..........................................................GCTGGGCGGGGGGCGG....................................................................................................................1601.001.00--------------------1.00------------------------------------------
..............................................................GGCGGGGGGCGGGGCAGCG.............................................................................................................191.000.00---------------------------------------------------1.00-----------
.......................................................................CGGGGCAGGTGGGCGGAGGCCCTGG..............................................................................................2511.001.00---------------------------1.00-----------------------------------
..........................................................................................................................................AGGATGATCGAGGACGGCT.................................191.000.00----------------------------1.00----------------------------------
................................................................CGGGGGGCGGGGCAGGCGG...........................................................................................................191.000.00---------------------------------------------1.00-----------------
...............................................................GCGGGGGGCGGGGCATG..............................................................................................................171.000.00----------------------1.00----------------------------------------
................................................................CGGGGGGCGGGGCAGCGA............................................................................................................181.000.00----1.00----------------------------------------------------------
..................................................................................GGCGGAGGCCCTGGGTTC..........................................................................................181.000.00-1.00-------------------------------------------------------------
..........................................................GCTGGGCGGGGGGCGTGGA.................................................................................................................191.000.00----1.00----------------------------------------------------------
......................................................................................................................ATGCCCCACCTCCCTGTCCCAGA.................................................2311.001.00-------------------------------1.00-------------------------------
...............................................................GCGGGGGGCGGGGCATGCG............................................................................................................191.000.00-----------------------------------------1.00---------------------
.......................................................................CGGGGCAGGTGGGCGGAGGCCC.................................................................................................2211.001.00----------------------------------------------1.00----------------
..................................................GTGGGTGGGCTGGGCGGT..........................................................................................................................181.000.00--------------1.00------------------------------------------------
................................................................................................................................................ATCGAGGACCTGGAGCTCTCCAA.......................2311.001.00-------------------------------------------------1.00-------------
......CTCAAGAGCATGGCTCAGGAGG..................................................................................................................................................................2211.001.00-------------------------------------------1.00-------------------
........................GAGGAGATCCGCAGAGAGATGGACAA............................................................................................................................................2611.001.00----------------1.00----------------------------------------------
....................................................................................................................................................AGGACCTGGAGCTCTCCAACAAACGGCACTCAT.........331.000.001.00--------------------------------------------------------------
.........................................................GGCTGGGCGGGGGGCTGGG..................................................................................................................191.000.00-------------------------------------------------------1.00-------
....................................................................GGGCGGGGCAGGTGGCGTA.......................................................................................................191.000.00----------------------------------------------------------1.00----
................................................................CGGGGGGCGGGGCAGTGT............................................................................................................181.000.00--------------------------1.00------------------------------------
..................................................................................................................................................CGAGGACCTGGAGCTCTCCAACAAACGGC...............2911.001.00-----------------------1.00---------------------------------------
....................................AGAGAGATGGACAAGTGGGTG.....................................................................................................................................2111.001.00----------------------------------------------------1.00----------
...........................................................................................CCTGGGGCTCTGCATAGCAGCA.............................................................................2211.001.00--------------------------------------------------1.00------------
..........................................................................................CCCTGGGGCTCTGCATAGCAG...............................................................................2111.001.00------------------------------------------------------1.00--------
.........................................................................................................................................................CTGGAGCTCTCCAACAAACGGCAC.............2411.001.00----------1.00----------------------------------------------------
.........................................................................................................................................................................AACGGCACTCACTGGTGCAGA2111.001.00-------1.00-------------------------------------------------------
..................................GCAGAGAGATGGACAAGAT.........................................................................................................................................191.000.00-----------------1.00---------------------------------------------
.......................................................................CGGGGCAGGTGGGCGGAG.....................................................................................................1820.500.50--------------------------------------------------------------0.50
....................................................................................................................................................AGGACCTGGAGCTCTC..........................1630.330.33-----------------------0.33---------------------------------------
.....................................................................................GGAGGCCCTGGGGCTCTG.......................................................................................1840.250.25------------------------0.25--------------------------------------
.................................................................................................................................................TCGAGGACCTGGAGC..............................1560.170.170.17--------------------------------------------------------------

Antisense strand
TCACGGCTCAAGAGCATGGCTCAGGAGGAGATCCGCAGAGAGATGGACAAGTGGGTGGGCTGGGCGGGGGGCGGGGCAGGTGGGCGGAGGCCCTGGGGCTCTGCATAGCAGCAGCCCCATGCCCCACCTCCCTGTCCCAGGATGATCGAGGACCTGGAGCTCTCCAACAAACGGCACTCACTGGTGCAGA
...........................................................((((((((((((.((((((...((((....)))).((((((((((...)))).)))))).)))))).)).))))).)))))..................................................
..................................................51.......................................................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
.........................................................GGCTGGGCGGGGGGCGGGGA................................................................................................................. 201.000.00----------------------1.00----------------------------------------
.....................................................................................GGAGGCCCTGGGGCTACAA...................................................................................... 191.000.00--------------------------------------------1.00------------------