ID: uc011mde.1_intron_4_0_chr9_136277613_r
GENE: (4)
chr9:136277563-136277947-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(1)
AGO3.ip
(15)
B-CELL
(2)
BRAIN
(19)
BREAST
(36)
CELL-LINE
(21)
CERVIX
(6)
HEART
(2)
HELA
(3)
LIVER
(3)
OTHER
(2)
RRP40.ip
(19)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
AGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGGGTACGCTGGTCTCAGGGAGTGGGGTCTGCTGGGGATGCTTAGCCGTGGAGGGCGGGGCTTCTTCAAGGAAGAGGATGCTTTCCTCTCCCTGAGGTGAATGAGGCAAGCACCTCCCAGGGTCCTGCTAAGAACCAGGACCACACAGAGCTTGTCACGTGGGTGCAAATGAGTGAGGGGCAGAGAGCTTTTCTCTGCTGACACTTAGTCCATGGATCCCTGGGGCTCTGACCTGGAGCCCTGTGGCCTGCCGTGTTTATTAAACTACAGCCTTTGGTTACCCTTCAGCCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTA
.....................................................................................................................................................((((.((((..(((....(((((((........))))))).......((((.((((.((....)).....)))).)))).))).)))).))))...............................................................................................................................................
.............................................................................................................................................142..................................................................................................243............................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189782SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040030(GSM532915)
G013N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532887(GSM532887)
G761N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
TAX577589(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR040032(GSM532917)
G603N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAAGA..................................................................................................................................................19049.0039.00--1.00----1.003.00--1.001.002.00-1.00--1.00--1.002.002.00-1.002.00-1.00---1.001.00-1.001.001.00-1.001.001.00-1.001.001.00-1.001.001.001.00--1.001.001.00---1.001.00-1.001.00--1.00----1.00-1.00-1.00--1.001.00-1.00-----------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGC......................................................................................................................................................15039.0039.0024.00---4.004.00---3.00----------2.00---2.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAGAC..................................................................................................................................................19016.0039.00-6.004.00----2.00---------2.00-------------------------------------------------1.001.00------------------------------------------------------------------
...........................................................................................................................................................................................................................GTGAGGGGCAGAGAGCGAGA..................................................................................................................................................2011.000.00------4.00---2.00-2.00---1.00----------------------------------------1.001.00----------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAAAA..................................................................................................................................................1908.0039.00-----------1.00---------1.00------------------------1.00-----------------1.00----1.00----1.00-1.001.00---------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGAC.................................................................................................................................................2077.430.29-0.140.57----0.710.14----0.29-----0.14-----0.14-0.140.14----0.29--0.14--0.14--------------------------------------------0.290.57-0.14--------0.430.14-0.430.290.290.14-0.14-0.29-0.14----0.14-0.14--0.140.14-0.14-0.140.14-0.14--------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGA..................................................................................................................................................1976.430.29--0.43----0.140.14----0.14-0.14-0.14-------0.86--0.14----0.140.29-0.140.14--0.14-------------------------------------------0.14-0.430.14------0.140.29-0.290.29---0.14-0.140.14---0.140.14------0.14----0.14--0.14-0.14-0.14---0.140.14
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAG...................................................................................................................................................1871.140.29-0.14-----0.14--------0.14-0.14----------------------------------------------------------------0.14-----------------------0.14----0.14-----------------0.14----
..................................................................................................................................................................................................................................................................................................................................................................TTGGACTGTGAGATGGTGGGCGTGC......251.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................TTGGACTGTGAGATGGTGGGCGTGGGCCCTT311.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................GTGAGATGGTGGGCGTGGGC....2011.001.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCACGA..................................................................................................................................................1901.0039.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AATGAGGCAAGCACCCCCG............................................................................................................................................................................................................................191.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................GAGAGCTTTTCTCTGCTGAC........................................................................................................................................2011.001.00------------------------------------------1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................ACACTTAGTCCATGGATCCCTGGGGCTCTG............................................................................................................3011.001.00-------------------------------------------------------------1.00-------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTTT...................................................................................................................................................1821.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAAT...................................................................................................................................................1801.0039.00--------------------------------------------------------------------------------1.00------------------------------------------------------
..................................................GTACGCTGGTCTCAGGGAGTG..........................................................................................................................................................................................................................................................................................................................2111.001.00------------------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................ACCAGGACCACACAGAGC...........................................................................................................................................................................................1811.001.00-------------------------------1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................AGCCTTAGCCTTGGACTGTGAGATGGTG.............2821.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCACCG..................................................................................................................................................1901.0039.00----------------------------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................GACTGTGAGATGGTGGGCGTGGGCC...2511.001.00------------------------------------------------------------------------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................................................................................GATCCCTGGGGCTCTGACCTG.......................................................................................................2111.001.00-----------------------------1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................TGGATCCCTGGGGCTCTA............................................................................................................181.000.00----------------------------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCATA...................................................................................................................................................1801.0039.00-----------------------------------------------------------------1.00---------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAAAT..................................................................................................................................................1901.0039.00----------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TGGACTGTGAGATGGTGGGCGTGGAC....261.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................GTACGCTGGTCTCAG................................................................................................................................................................................................................................................................................................................................1511.001.00--------------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAATA..................................................................................................................................................1901.0039.00-----------1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GAGGGGCAGAGAGCTCTAT.................................................................................................................................................191.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GTGAGGGGCAGAGAGCGAGT..................................................................................................................................................201.000.00----------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................CTCAGGGAGTGGGGTTGC...................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................TTGGACTGTGAGATGGTGG............1921.001.00-------------------0.50---------------------------------------------------------------------0.50---------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TTAGCCTTGGACTGTGAGATGGT..............2321.001.00---0.50----------------------------------------------------------------------------------------0.50------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCAAAC..................................................................................................................................................1901.0039.00----------------------------------------------------------------------1.00----------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGAA.................................................................................................................................................2070.860.29-------------0.14---------------------0.14-----0.14--------------------------------------------0.14-----------------------------0.14-----------0.14------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTATA..................................................................................................................................................1970.710.29-------------------------------------0.14-------------------------------------------------0.29-------------------------------------------0.140.14--
............................................................................................................................................................................................................................................................................................................................................................TTAGCCTTGGACTGTGAGATGGTG.............2420.500.50------------------------------0.50--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................ACAAGAGCCTTAGCCTTGGACTGTGAGATGG...............3120.500.50-------------------------------0.50-------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TTAGCCTTGGACTGTGAGATGGTGGGC..........2720.500.50-----------------------------------------------------------------------------------0.50---------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................AGCCTTAGCCTTGGACTGTGAGATGGTGGG...........3020.500.50-----------------------------0.50---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................CAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGG...........3420.500.50------------------------------------------------------------------------------------------0.50--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TAGCCTTGGACTGTGAGATGGTGGGC..........2620.500.50---0.50-----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TGGACTGTGAGATGGTGG............1820.500.50----------------------------------------------------------------------------------------0.50----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CCTTAGCCTTGGACTGTGAGATGGTG.............2620.500.50-------------------0.50-------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGAGCCTTAGCCTTGGACTGTGAGATGGTGG............3120.500.50--------------------------------0.50------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCCTTGGACTGTGAGATGG...............2020.500.50---------------------------------------------------------------------------------------------0.50-----------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGAG.................................................................................................................................................2070.430.29--------0.14------------------0.140.14----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGAT.................................................................................................................................................2070.430.29-----------------------------------0.14---------------------------------------------------------------------------0.14--0.14--------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTCGAC.................................................................................................................................................2070.430.29----------------------------0.14---------0.14---------------------------------------------0.14--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................TTGGACTGTGAGATGG...............1630.330.33---0.33-----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTT....................................................................................................................................................1730.330.33----------------------------------------------------------------------------------------------0.33----------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTTCCT.................................................................................................................................................2030.330.33--------------0.33------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTATAC.................................................................................................................................................2070.290.29--------0.14---------------------------------------------------------------------------0.14--------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGTC.................................................................................................................................................2070.290.29---------------------------0.14---------------------------------------------------------------------------0.14-------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCT.....................................................................................................................................................1670.290.29--------------0.14--------------------------------------------------------------------0.14---------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGTA.................................................................................................................................................2070.290.29-----------------------------------------------------------------------------------------------0.14--0.14------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTA....................................................................................................................................................1770.140.29---------------------------------------------------------------------------------------------------------0.14-----------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAAAC.................................................................................................................................................2070.140.29---------------------------0.14-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTATAA.................................................................................................................................................2070.140.29-------------------------------------------------------------------------------------------------------0.14-------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTACAG.................................................................................................................................................2070.140.29---------------------------0.14-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTAGC..................................................................................................................................................1970.140.29----------------------------------0.14----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTACAA.................................................................................................................................................2070.140.29------------------------------------------------------------------------------------------------------------------------0.14--------------
............................................................................................................................................................................................................................TGAGGGGCAGAGAGCTATCG.................................................................................................................................................2070.140.29---------------------------0.14-----------------------------------------------------------------------------------------------------------

Antisense strand
AGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGGGTACGCTGGTCTCAGGGAGTGGGGTCTGCTGGGGATGCTTAGCCGTGGAGGGCGGGGCTTCTTCAAGGAAGAGGATGCTTTCCTCTCCCTGAGGTGAATGAGGCAAGCACCTCCCAGGGTCCTGCTAAGAACCAGGACCACACAGAGCTTGTCACGTGGGTGCAAATGAGTGAGGGGCAGAGAGCTTTTCTCTGCTGACACTTAGTCCATGGATCCCTGGGGCTCTGACCTGGAGCCCTGTGGCCTGCCGTGTTTATTAAACTACAGCCTTTGGTTACCCTTCAGCCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTA
.....................................................................................................................................................((((.((((..(((....(((((((........))))))).......((((.((((.((....)).....)))).)))).))).)))).))))...............................................................................................................................................
.............................................................................................................................................142..................................................................................................243............................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189782SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040030(GSM532915)
G013N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532887(GSM532887)
G761N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
TAX577589(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR040032(GSM532917)
G603N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
......................................................................................................................................................................................................................................................................................................................................ACCCTTCAGCCTGACTTCA........................................ 191.000.00----------------------------------------------------------------------------------1.00----------------------------------------------------
....AGGGCAGCGTCAGCCTGC........................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------------------------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................ACCCTTCAGCCTGACATGT........................................ 191.000.00--------------------------------------------------------1.00------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................AGGCCACAGGGCTCCAGG......................................................................................... 1820.500.50-------------------------------------------------------------------------------------------0.50-------------------------------------------