ID: uc011maw.1_intron_4_0_chr9_131020478_r
GENE: (21)
chr9:131020428-131020783-


(2)
AGO2.ip 		(2)
B-CELL 		(2)
BRAIN 		(13)
BREAST 		(15)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HEART 		(13)
HELA 		(5)
LIVER 		(3)
OTHER 		(22)
SKIN 		(1)
TESTES

Sense strand
CTCAGCCCATGCCAAGCATCCCGGAGGACCTGGAGAGCCGGGAAGCCATGGTGAGGCTGACTCCCCCTCCCCAACCTTTGCTGCCTCCCTCTGTGGTCCCTCCCAGACCCCCTTCTGCTCTTGGTTTCCCGGCCTTCTGATTTCTTCGGACCCTCACCCCTTTCCTGGGAGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCCCCAAGGGAAGGGCTGCTCTCTACCTCCCTGCCCTGTTCATCCTATATATCCTCCTACAAGAATGCACCCCTCTTGCCTGCAGGTGGCATTTTTCAACTCAGCTGTAGCCAGTGCCGAGGAGGAGCAGGCAAG
.....................................................................................................................................................................((((.(((.((((((...))))))..((((((.......))))))..........))))))).................................................................................................................................
....................................................................................................................................................................165...........................................................227...............................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGC.....................................................................................................................................541157.00157.00101.0025.0014.00--9.008.00-----------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................55162.0062.0046.005.0011.00---------------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACT.................................................................................................................................................................26117.0017.00-------5.004.004.00-----3.00-1.00------------------------------------------------------------------
..........................................................................................................................................................................GCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGC.....................................................................................................................................53114.0014.0011.001.002.00---------------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGG......................................................................................................................................5319.009.006.003.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................AGTGCACCCTCTGAGGC.....................................................................................................................................1716.006.00----5.00------1.00------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAA........................................................................................................................................................3515.005.00-------------3.00---------1.00------------------------------------1.00-----------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACACCATTTCAC..................................................................................................................................................................2615.005.00-------2.001.001.00-------1.00------------------------------------------------------------------
..............................................................................................................................................................................................................AGTGCACCCTCTGAGGCC....................................................................................................................................1814.004.00----3.00--------------------------1.00----------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCCC...................................................................................................................................5613.003.001.001.001.00---------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................CAGCTGTAGCCAGTGCCGAGGAGGAG........2613.003.00------------1.00-----------------------------1.00------------------------1.00----------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACC.........................................................................................................................................................................1813.003.00------------------------1.001.00-----------------------1.00----------------------------------
.............................................................................................................................................................................................................AAGTGCACCCTCTGAGGCC....................................................................................................................................1913.003.00--------------------------------1.00---1.00--------------------------------1.00--------------
...................................................................................................................................................................................................TGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................2912.002.00----1.00----------------------1.00--------------------------------------------------------
..........................................................................................................................................................................................................AACAAGTGCACCCTCTGAGGCC....................................................................................................................................2212.002.00----2.00-------------------------------------------------------------------------------
...........................ACCTGGAGAGCCGGGAAGCCATGGCGG..............................................................................................................................................................................................................................................................................................................272.000.00--------------2.00---------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAG.......................................................................................................................................................................................................................................................................................................................2112.002.00---------------------------------1.001.00-------------------------------------------------
..................TCCCGGAGGACCTGGAGAGCCGG...........................................................................................................................................................................................................................................................................................................................2312.002.00---1.00-----------------------------------------1.00--------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATT......................................................................................................................................................................2112.002.00-----------2.00------------------------------------------------------------------------
......................GGAGGACCTGGAGAGCCGGGAAG.......................................................................................................................................................................................................................................................................................................................2312.002.00------------------1.00-----1.00-----------------------------------------------------------
..........................................................................................................................................................................GCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................5412.002.002.00-----------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAGCC.....................................................................................................................................................................................................................................................................................................................2312.002.00---2.00--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAGC......................................................................................................................................................................................................................................................................................................................2212.002.00---2.00--------------------------------------------------------------------------------
...............GCATCCCGGAGGACCTGGAGAGCCGG...........................................................................................................................................................................................................................................................................................................................2612.002.00---2.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................CAACAAGTGCACCCTCTGAGGCC....................................................................................................................................2312.002.00----------2.00-------------------------------------------------------------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................5612.002.002.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................AACTCAGCTGTAGCCAGTGCCGAGGAGGAG........3012.002.00---1.00------------1.00-------------------------------------------------------------------
...................CCCGGAGGACCTGGAGAGC..............................................................................................................................................................................................................................................................................................................................1921.501.50---1.00--------------------------------------------------------------------0.50-----------
.........TGCCAAGCATCCCGGAGGACCTGGAGAGC..............................................................................................................................................................................................................................................................................................................................2911.001.00---1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................CAAGTGCACCCTCTGAGGC.....................................................................................................................................1911.001.00----------------1.00-------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................AGCTGTAGCCAGTGCCGAGGAGGAGCAGGCAAG3311.001.00------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................TCACTTGGGACCAACAAGTGCACCCTCTGAGG......................................................................................................................................3211.001.00----1.00-------------------------------------------------------------------------------
.TCAGCCCATGCCAAGCAAC................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00--------------------------------------------------------------------------------
....................................................................................................TCCCAGACCCCCTTCTGCTTGAA.........................................................................................................................................................................................................................................231.000.00-----------------------------------------------------------1.00------------------------
......................................................................................................................................................................GGGAGCCAGTGGTGATACC...........................................................................................................................................................................191.000.00--------------------1.00---------------------------------------------------------------
.............................CTGGAGAGCCGGGAAGCCATG..................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------1.00------------------------------------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACACCATTTCACTTG...............................................................................................................................................................2911.001.00--------------------1.00---------------------------------------------------------------
....................................................................................................................................................................................................GGGACCAACAAGTGCACCCTCTGAGG......................................................................................................................................2611.001.00--------------------------------------------------1.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................ACTCAGCTGTAGCCAGTGCCG................2111.001.00---1.00--------------------------------------------------------------------------------
...........CCAAGCATCCCGGAGGACC......................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00------------------------------
....................................................................................................................................................................................................GGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................2811.001.00------------------1.00-----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................TGGCATTTTTCAACTCAGCTGTAGC........................2521.001.00---1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................CCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................5311.001.001.00-----------------------------------------------------------------------------------
.........TGCCAAGCATCCCGGAGGAC.......................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------1.00-------------------------------------------------------
.............AAGCATCCCGGAGGACCTGGAGAGCC.............................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------1.00------------------
..............AGCATCCCGGAGGACACTC...................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------1.00-------------------------------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACAGCGA.......................................................................................................................................................................211.000.00--------------------------------------1.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................................TCAACTCAGCTGTAGCCAG.....................1911.001.00---1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGT.....................................................................................................................................5411.009.001.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................TGGCATTTTTCAACTCAGCTTAGC.........................241.000.00---1.00--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAGCCATGGT................................................................................................................................................................................................................................................................................................................2811.001.00---1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGCC.....................................................................................................................................541.000.001.00-----------------------------------------------------------------------------------
.......................GAGGACCTGGAGAGCCGGGAAGCCATG..................................................................................................................................................................................................................................................................................................................2711.001.00---------------------1.00--------------------------------------------------------------
..........................................................................................................................................................................GCCAGTGGTGAGACACCATTTCACTT................................................................................................................................................................2611.001.00--------1.00---------------------------------------------------------------------------
....................................................................................................TCCCAGACCCCCTTCTAC..............................................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------1.00------------
........................................................................................................................................................................................................CCAACAAGTGCACCCTCTGAGGCCC...................................................................................................................................2511.001.00----------------------------------------------------1.00-------------------------------
........................AGGACCTGGAGAGCCGGGAA........................................................................................................................................................................................................................................................................................................................2011.001.00------------------------------------------------------1.00-----------------------------
.......................GAGGACCTGGAGAGCCGGGAAGCCA....................................................................................................................................................................................................................................................................................................................2511.001.00---------------------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................GGACCAACAAGTGCACCCTCTGAGGCCG...................................................................................................................................281.000.00----------------------------------------------------------------1.00-------------------
........................................................................................................................................................................................................................................................................................................................................TAGCCAGTGCCGAGGAGGAGC.......2111.001.00----------------------------------------------------------1.00-------------------------
..................................................................................................................................................................................................................................................................................................................................CAGCTGTAGCCAGTGCCGAGGAGGAGC.......2711.001.00-------------------------------------------------------------1.00----------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACAGGGA.......................................................................................................................................................................211.000.00---------------------------------------1.00--------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTC....................................................................................................................................................................2311.001.00----------------------------------------------1.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................TCAACTCAGCTGTAGCCAGTGCA.................231.000.00---------------------------------------------------------1.00--------------------------
............CAAGCATCCCGGAGGACC......................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------1.00-----------------
....................................................................................................................................................................................................................................................................................................................GGCATTTTTCAACTCAGCTGTAGCCAGTG...................2911.001.00--------------------------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................................................................................................................TTCAACTCAGCTGTAGCCAGTGCC.................2411.001.00---1.00--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAGCCAT...................................................................................................................................................................................................................................................................................................................2511.001.00---1.00--------------------------------------------------------------------------------
....................CCGGAGGACCTGGAGAGCG.............................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00-----------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGACACCATTTCA...................................................................................................................................................................2411.001.00-----------------------1.00------------------------------------------------------------
........................................................................................................................................................................GAGCCAGTGGTGAGACAGGG........................................................................................................................................................................201.000.00--------------------------------------------1.00---------------------------------------
........................................................................................................................................................................................................................................................................................................................TTTTTCAACTCAGCTGTAGCCAGTGC..................2611.001.00---1.00--------------------------------------------------------------------------------
.............AAGCATCCCGGAGGACCTA....................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------------1.00----------------------------------------
..............................................................................................................................................................................GTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCC....................................................................................................................................5011.001.001.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGCCGAGTAT...........181.000.00------------------------------------------------1.00-----------------------------------
..................................................................................................................................................................................................................................................................................................................................CAGCTGTAGCCAGTGCCGAGGAGGAGCA......2811.001.00--------------------------1.00---------------------------------------------------------
....................................................................................................................................................................................................GGGACCAACAAGTGCACCCTCTGAGGCCC...................................................................................................................................2911.001.00-------------------1.00----------------------------------------------------------------
.TCAGCCCATGCCAAGCATCCCGGAGG.........................................................................................................................................................................................................................................................................................................................................2621.001.00---1.00--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGAAGCCA....................................................................................................................................................................................................................................................................................................................2411.001.00------------1.00-----------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................CTCAGCTGTAGCCAGTGCCGAGGAGGAGCAGG....3211.001.00---1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................TTCAACTCAGCTGTAGCCAGTGCCGA...............2611.001.00---1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................ACAAGTGCACCCTCTGAGGCC....................................................................................................................................2111.001.00---------------------------------------------------------------1.00--------------------
.................................AGAGCCGGGAAGCCATGGTG...............................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................TCAGCTGTAGCCAGTGCCGAGGAG...........2411.001.00----------1.00-------------------------------------------------------------------------
...............GCATCCCGGAGGACCTGGAGAGC..............................................................................................................................................................................................................................................................................................................................2320.500.50---0.50--------------------------------------------------------------------------------
......................GGAGGACCTGGAGAGCCGGG..........................................................................................................................................................................................................................................................................................................................2020.500.50-------------------------0.50----------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTCAACTCAGCTGTAGC........................1820.500.50---0.50--------------------------------------------------------------------------------
...............GCATCCCGGAGGACCTG....................................................................................................................................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------0.50----------
........................AGGACCTGGAGAGCCGGG..........................................................................................................................................................................................................................................................................................................................1880.500.50---0.12------0.12---------------------------------------------------------------------0.120.12--
.................ATCCCGGAGGACCTGGAGA................................................................................................................................................................................................................................................................................................................................1920.500.50---0.50--------------------------------------------------------------------------------
..............................................................................................................................................................................................................AGTGCACCCTCTGAGG......................................................................................................................................1620.500.50--------------------------------------------------------------------------0.50---------
......................................................................................................................................................................................................................................................................................................................CATTTTTCAACTCAGCTGTAGC........................2220.500.50---0.50--------------------------------------------------------------------------------
..................TCCCGGAGGACCTGGAGA................................................................................................................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------0.50--------
...............GCATCCCGGAGGACCTGGAGA................................................................................................................................................................................................................................................................................................................................2120.500.50---0.50--------------------------------------------------------------------------------
..............................................................................................................................................................................................................AGTGCACCCTCTGAG.......................................................................................................................................1550.400.40----------------------------------------------------------------------------0.40-------
........ATGCCAAGCATCCCGGAG..........................................................................................................................................................................................................................................................................................................................................1830.330.33---0.33--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCGGGA.........................................................................................................................................................................................................................................................................................................................1980.250.25-------------------------------------------------------------------------------0.12--0.12-
.................................................................................................................................................................................................................GCACCCTCTGAGGCCC...................................................................................................................................1680.120.12-----------------------------------------------------------------------------------0.12
........................AGGACCTGGAGAGCCGG...........................................................................................................................................................................................................................................................................................................................1780.120.12---0.12--------------------------------------------------------------------------------
........................AGGACCTGGAGAGCCG............................................................................................................................................................................................................................................................................................................................1680.120.12--------------------------0.12---------------------------------------------------------
.........................................................................................................................................................................AGCCAGTGGTGAGAC............................................................................................................................................................................1590.110.11----0.11-------------------------------------------------------------------------------

Antisense strand
CTCAGCCCATGCCAAGCATCCCGGAGGACCTGGAGAGCCGGGAAGCCATGGTGAGGCTGACTCCCCCTCCCCAACCTTTGCTGCCTCCCTCTGTGGTCCCTCCCAGACCCCCTTCTGCTCTTGGTTTCCCGGCCTTCTGATTTCTTCGGACCCTCACCCCTTTCCTGGGAGCCAGTGGTGAGACACCATTTCACTTGGGACCAACAAGTGCACCCTCTGAGGCCCCAAGGGAAGGGCTGCTCTCTACCTCCCTGCCCTGTTCATCCTATATATCCTCCTACAAGAATGCACCCCTCTTGCCTGCAGGTGGCATTTTTCAACTCAGCTGTAGCCAGTGCCGAGGAGGAGCAGGCAAG
.....................................................................................................................................................................((((.(((.((((((...))))))..((((((.......))))))..........))))))).................................................................................................................................
....................................................................................................................................................................165...........................................................227...............................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)
.............................................................TCCCCCTCCCCAACCAAA..................................................................................................................................................................................................................................................................................... 182.000.00-------------------------------------1.00------------------------------1.00---------------
..........................................................................................................ACCCCCTTCTGCTCTGGGG....................................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------1.00---------------------
.................................................................................................................................CGGCCTTCTGATTTCTAGG................................................................................................................................................................................................................ 191.000.00----------------------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................AGAATGCACCCCTCTTGCCTCG.................................................... 221.000.00---------------------------------------------------1.00--------------------------------
..............................................................................................................................TCCCGGCCTTCTGATGA..................................................................................................................................................................................................................... 171.000.00-------------------------------------------------------1.00----------------------------
....................................................................................................................................................................................................................................................TATATAGGATGAACAGGGCAGGGAGGTA.................................................................................... 2811.001.00-----------------------------------------1.00------------------------------------------
..............................................................................................................................................................................................................................................................ATATAGGATGAACAGGG..................................................................................... 1711.001.00-----------------------------1.00------------------------------------------------------
.............................................................TCCCCCTCCCCAACCAAAA.................................................................................................................................................................................................................................................................................... 191.000.00-------------------1.00----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................GAATGCACCCCTCTTGCCTGCACCG................................................ 251.000.00--------------1.00---------------------------------------------------------------------
.................................................................................................................................CGGCCTTCTGATTTCTAAGA............................................................................................................................................................................................................... 201.000.00----------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................................................................................CCTATATATCCTCCTATATG........................................................................ 201.000.00-----------------------------------------------1.00------------------------------------
...........................................................................................................................................................................................................................................................AGGATGAACAGGGCAG......................................................................................... 1670.140.14------------------------------------------------------------------------------0.14-----
.......................................................................................................................................................................................................................................................TGAACAGGGCAGGGAG............................................................................................. 1670.140.14----------------0.14-------------------------------------------------------------------