ID: uc011mas.1_intron_4_0_chr9_130931799_r
GENE: (13)
chr9:130931749-130931951-


(3)
BREAST
(9)
CELL-LINE
(6)
HEART
(1)
OTHER
(30)
SKIN
(1)
XRN.ip

Sense strand
CCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGGTGGGCCTGCCCGGGGGAGGTGAGCTCTTGCTGGGCCCTGCCTGGGTGCTAGTCAGGGGGCTTGCAGCTGGGGACACTGCTTGGTTGGCCTGCCTTTTTCCAGATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTT
...................................................................(((((((((((((((((((((.....)))).)))))..))))))))((((.((....)))))).......))))..............................................................
...............................................................64.............................................................................143..........................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................GGTGAGCTCTTGCTGGC......................................................................................................................17243.503.006.001.00-2.002.002.001.002.002.002.002.00---2.00-1.001.001.001.00-1.00-1.001.00--1.001.00-1.001.00-1.001.001.001.001.001.001.00-1.00-0.50------
....................................................................GGTGAGCTCTTGCTGGCC.....................................................................................................................1829.003.002.001.00----1.00----2.00--------1.00----1.00--------------1.00---------
.......................................................................................................................GGGGACACTGCTTGGTGGGC................................................................203.000.00--3.00-----------------------------------------------
....................................................................GGTGAGCTCTTGCTGG.......................................................................................................................1623.003.000.50--0.50-----------1.500.50---------------------------------
.............................................................................................................................ACTGCTTGGTTGGCCTGC............................................................1812.002.00------------2.00-------------------------------------
....................................................................GGTGAGCTCTTGCTGGCCC....................................................................................................................1921.003.001.00-------------------------------------------------
..................................................GTGGGCCTGCCCGGGCTG.......................................................................................................................................181.000.00-----------------------------1.00--------------------
.......................................................................................................................................................................CTTGCGACCCTTCTGCACCG................2011.001.00-1.00------------------------------------------------
.............GCAGGGGTGGAGCACGGGC...........................................................................................................................................................................191.000.00--------------------------1.00-----------------------
..............................................TATGGTGGGCCTGCCCGGCATG.......................................................................................................................................221.000.00--------------------------------1.00-----------------
...................................................................AGGTGAGCTCTTGCTGGC......................................................................................................................181.000.001.00-------------------------------------------------
................................................................................CTGGGCCCTGCCTGGG...........................................................................................................1601.001.00----------------------1.00---------------------------
.....................................................................GTGAGCTCTTGCTGG.......................................................................................................................1560.670.67-------------------------------------------0.17--0.170.170.17-
..................................................................................GGGCCCTGCCTGGGTGC........................................................................................................1720.500.50--------------------------------------------0.50-----
....................................................................GGTGAGCTCTTGCTG........................................................................................................................1580.380.38----0.12------------0.12-------------------------------0.12

Antisense strand
CCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGGTGGGCCTGCCCGGGGGAGGTGAGCTCTTGCTGGGCCCTGCCTGGGTGCTAGTCAGGGGGCTTGCAGCTGGGGACACTGCTTGGTTGGCCTGCCTTTTTCCAGATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTT
...................................................................(((((((((((((((((((((.....)))).)))))..))))))))((((.((....)))))).......))))..............................................................
...............................................................64.............................................................................143..........................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................CAGAAGGGTCGCAAGGATTGTTTG..................... 2412.002.00-------------2.00------------------------------------
....................................................................................................................................................TCCAGATTGCCAAACCTC..................................... 181.000.00------------------------------------------1.00-------
.....................................................................................................................................................TGTTTGGCAATCTGG....................................... 1540.250.25---------------------------------------------0.25----