ID: uc011lys.1_intron_7_0_chr9_125144027_f.3p
GENE: PTGS1(8)
chr9:125145588-125145837+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(6)
CELL-LINE 		(18)
CERVIX 		(1)
FIBROBLAST 		(2)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS

Sense strand
GGAAGATGAGCGGGGGTTGCTTGAGGTAGTGGTGGTAGAGATGGAGAGCAGGGGACTGATTTTAAGAGACATTTTGGAGGTGGAATCAACAGCCTTGGCTGAGGGGAACTGGCAGCTGGAGGCAGGAGTGGGAGGGAGTTGGTTGTGGGCAGCTGTGGGTGACCCCCAACCCCAGGTTGCCAGGTGGCCCCATCCCACAGGTGCTGGATGGAGAAATGTACCCGCCCTCGGTAGAAGAGGCGCCTGTGTT
.....................................................................((((((.((.......))....((((((((((.((....))..)))))).)))).))))))..........(((((....)))))................................................................................................
...................................................................68.....................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040039(GSM532924)
G531T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040032(GSM532917)
G603N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................GGAGGGAGTTGGTTGTGTGGT...................................................................................................2145.000.002.00-12.009.003.00-2.004.006.00--2.00------------1.00--1.00----------------1.00--1.00-1.00-------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGG....................................................................................................2011.000.001.00-1.001.002.00--1.001.001.00-1.001.00---------1.00----------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATAG....................................................................................................2011.000.003.00-1.001.00-1.00-1.00-2.001.00----------------------------------1.00-----------
..................................................................................................................................GGAGGGAGTTGGTTGTATTG....................................................................................................2011.000.005.00--1.001.001.00------1.001.00-------1.00-----------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTG.....................................................................................................198.000.00--1.00-1.00-2.002.001.00----------------1.00-------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGGT..................................................................................................217.000.00-6.00--------------1.00----------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTAT......................................................................................................186.000.002.00--1.00-----2.00---------------------1.00-------------------------
...................................................................................................................................GAGGGAGTTGGTTGTATAG....................................................................................................196.000.00-----6.00---------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGGC...................................................................................................215.000.00--2.00-1.00-----1.00-1.00--------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGGTG.....................................................................................................195.000.002.00-1.00---1.00--------1.00-----------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATT.....................................................................................................195.000.001.00---1.00-2.00-1.00------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATGG....................................................................................................204.000.00--1.00-1.00----1.00---------1.00-------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGTT..................................................................................................214.000.00-4.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATG.....................................................................................................194.000.001.00-----2.00------------1.00-------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTGG....................................................................................................193.000.00-1.00------------1.00-1.00----------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGT......................................................................................................183.000.001.00-1.00---1.00--------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTAA......................................................................................................183.000.00----1.00--------1.00------------------------------------1.00------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGTT...................................................................................................213.000.00---1.00-----------1.00-------1.00---------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTGGT...................................................................................................203.000.00-3.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTTGT...................................................................................................213.000.00---2.00----1.00------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGATG.....................................................................................................193.000.001.00-1.00-----1.00------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGCT...................................................................................................213.000.00--1.001.00-------1.00---------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTGGG...................................................................................................202.000.00-1.00------------------------------1.00------------------------
.........................................................GATTTTAAGAGACATTTTGGAGGTGG.......................................................................................................................................................................2612.002.00--------------------2.00------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGGA...................................................................................................212.000.00---------1.00------------------1.00----------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGGGTTA.................................................................................................232.000.00--------------1.00---1.00--------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTA.....................................................................................................192.000.00-------1.00----------1.00--------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATTC....................................................................................................202.000.00--1.00----1.00-------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGGTT.................................................................................................222.000.00-2.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGATT.....................................................................................................192.000.001.00-------------1.00------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGC....................................................................................................202.000.001.00-----1.00--------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTAAT.....................................................................................................192.000.002.00--------------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGTTT.................................................................................................222.000.00-1.00--------------------------------------1.00----------------
...................................................................................................................................GAGGGAGTTGGTTGTATAA....................................................................................................192.000.00-----2.00---------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGAA......................................................................................................181.000.00------------1.00--------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTTGTG....................................................................................................191.000.00-----------------------1.00---------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATCG....................................................................................................201.000.00----------1.00----------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGTTA.................................................................................................221.000.00-1.00-------------------------------------------------------
.....................TGAGGTAGTGGTGGTTTA...................................................................................................................................................................................................................181.000.00----------------------------------1.00----------------------
..................................................................................................................................GGAGGGAGTTGGTTGCAT......................................................................................................181.000.001.00--------------------------------------------------------
...............................................................................................................................................................................................................ATGGAGAAATGTACCCGCCCTCGGTAGAAGAG...........3211.001.00-----------------------------------------1.00---------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTTAC...................................................................................................211.000.00------------1.00--------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTTCT...................................................................................................211.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGA....................................................................................................201.000.00----------1.00----------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGAG....................................................................................................201.000.00-----1.00---------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGAGGT...................................................................................................211.000.00--1.00------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTTTG.....................................................................................................191.000.00-------1.00-------------------------------------------------
........................................................................TTTGGAGGTGGAATCAACAGCCTTG.........................................................................................................................................................2511.001.00---------------------------------------------------1.00-----
.................................................................GAGACATTTTGGAGGGAG.......................................................................................................................................................................181.000.00-----------------1.00---------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATGT....................................................................................................201.000.00-----------------------------------1.00---------------------
...................................................................................................................................GAGGGAGTTGGTTGTCTAG....................................................................................................191.000.00----------------1.00----------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGTAT.................................................................................................221.000.00-1.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTTTAG....................................................................................................201.000.00----1.00----------------------------------------------------
.....................................................................................................................GGAGGCAGGAGTGGGAACAG.................................................................................................................201.000.00-----1.00---------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGATTG..................................................................................................211.000.00-1.00-------------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGGGCT..................................................................................................211.000.00-1.00-------------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTTTAA....................................................................................................191.000.00-------------1.00-------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTATA...................................................................................................201.000.00-1.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTAGT...................................................................................................211.000.00------------------------------------------------1.00--------
..................................................................................................................................GGAGGGAGTTGGTTGTAAA.....................................................................................................191.000.00-----------1.00---------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTTT......................................................................................................181.000.00----------1.00----------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGCC...................................................................................................211.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGA.......................................................................................................171.000.00---------------------------------1.00-----------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGTTC...................................................................................................211.000.00-------------1.00-------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTACAG....................................................................................................191.000.00-----1.00---------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGAT......................................................................................................181.000.00------1.00--------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTTGT...................................................................................................201.000.00-1.00-------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATAA....................................................................................................201.000.00------1.00--------------------------------------------------
.....................................................................................................................................................................................................CAGGTGCTGGATGGAGAA...................................1821.001.00---------------------------------------1.00-----------------
........................................................................TTTGGAGGTGGAATCAGAAC..............................................................................................................................................................201.000.00-------------------------------------1.00-------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGCGGC...................................................................................................211.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTC.......................................................................................................171.000.00-----------------------------1.00---------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTTA....................................................................................................201.000.001.00--------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTTC....................................................................................................201.000.00---------------1.00-----------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGAAG.....................................................................................................191.000.00----------------------1.00----------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTTCT.....................................................................................................191.000.00---------------------1.00-----------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGTAGT...................................................................................................201.000.00-------------1.00-------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTACA.....................................................................................................191.000.00-----1.00---------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGGGGT..................................................................................................221.000.00------------------------------1.00--------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGCGGT...................................................................................................211.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATAT....................................................................................................201.000.00--------------1.00------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTAAAG....................................................................................................201.000.00----1.00----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATA.....................................................................................................191.000.00------1.00--------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTTGT.....................................................................................................191.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGAC......................................................................................................181.000.001.00--------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTATGC....................................................................................................201.000.00---1.00-----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGGG.......................................................................................................171.000.00------------------------------------------1.00--------------
...................................................................................................................................GAGGGAGTTGGTTGTTTAG....................................................................................................191.000.00-----1.00---------------------------------------------------
....................................................................................................................................AGGGAGTTGGTTGTGTGG....................................................................................................181.000.00-----------------1.00---------------------------------------
....................................................................................................................................AGGGAGTTGGTTGTGGGGTTA.................................................................................................211.000.00-1.00-------------------------------------------------------
...................................................................................................................................GAGGGAGTTGGTTGTGGATTA..................................................................................................211.000.00-1.00-------------------------------------------------------
..........................................................................................................AACTGGCAGCTGGAGTTT..............................................................................................................................181.000.00--------------------------------------1.00------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGGGTGA.................................................................................................231.000.00-----------------------------------------------------1.00---
..................................................................................................................................GGAGGGAGTTGGTTGTGTTG....................................................................................................201.000.00----1.00----------------------------------------------------
.............................................................................................CTTGGCTGAGGGGAACTCTG.........................................................................................................................................201.000.00----------------------------------------------------1.00----
..........................................................................................................................................................................................................................................AAGAGGCGCCTGTGTC161.000.00-------------------------------------------1.00-------------
..................................................................................................................................GGAGGGAGTTGGTTGTCTGG....................................................................................................201.000.00---------1.00-----------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTGGG...................................................................................................211.000.00----1.00----------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGTT.....................................................................................................191.000.001.00--------------------------------------------------------
..................................................................................................................................GGAGGGAGTTGGTTGTGGT.....................................................................................................191.000.001.00--------------------------------------------------------
.....................................................................................................................................................................................................CAGGTGCTGGATGGAGA....................................1730.330.33------------------------------------------------------0.33--

Antisense strand
GGAAGATGAGCGGGGGTTGCTTGAGGTAGTGGTGGTAGAGATGGAGAGCAGGGGACTGATTTTAAGAGACATTTTGGAGGTGGAATCAACAGCCTTGGCTGAGGGGAACTGGCAGCTGGAGGCAGGAGTGGGAGGGAGTTGGTTGTGGGCAGCTGTGGGTGACCCCCAACCCCAGGTTGCCAGGTGGCCCCATCCCACAGGTGCTGGATGGAGAAATGTACCCGCCCTCGGTAGAAGAGGCGCCTGTGTT
.....................................................................((((((.((.......))....((((((((((.((....))..)))))).)))).))))))..........(((((....)))))................................................................................................
...................................................................68.....................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040039(GSM532924)
G531T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040032(GSM532917)
G603N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................GAGGTAGTGGTGGTAGCAAA................................................................................................................................................................................................................ 201.000.00--------------------------1.00------------------------------
..................................................................................................................CCCTCCCACTCCTGCCTCCAGC.................................................................................................................. 2211.001.00----------------------------------------------1.00----------
....................................................................................................................TCCCACTCCTGCCTCCA..................................................................................................................... 1780.120.12-------------------------------------------------------0.12-
............................................................................................................TGCCTCCAGCTGCCAG.............................................................................................................................. 1690.110.11--------------------------------------------------------0.11