ID: uc011lyp.1_intron_1_0_chr9_125007573_r.3p
GENE: RBM18(2)
chr9:125007523-125007772-


(12)
B-CELL 		(2)
BREAST 		(28)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(3)
HEART 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN

Sense strand
AGTTTTTCATTAATTCTAAGTGTAAAGTGGTCCTAAAATTGTCTAGAAGTAAGCTGATGATATACTGATGGTATTAGTTTCTGAACCCATCCACTACAGTAAAGGGCTGGTTTCTGCCCATGTGAAGTAATTTCTCTATTTCTCATTTTCAGAGATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAGGTAAGATGATGT
.............................................((((...((((..........(((((..((((...))))..))))).....))))...((((........)))).((.((((((.......)))))).)).))))....................................................................................................
............................................45........................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.................................................TAAGCTGATGATATACTGATG....................................................................................................................................................................................211109.00109.0014.0013.0010.008.007.002.004.002.004.003.003.002.00-2.003.002.002.002.002.00-2.002.002.00--1.001.001.00-----1.00-1.00-1.001.001.00-1.00-1.00-1.00--1.001.001.001.00-1.001.00-1.00-
.................................................TAAGCTGATGATATACTGATGGTATT...............................................................................................................................................................................2613.003.00-----3.00----------------------------------------------------
.................................................TAAGCTGATGATATACTGAGG....................................................................................................................................................................................2112.002.00------------1.001.00--------------------------------------------
................................................GTAAGCTGATGATATACTGATG....................................................................................................................................................................................2212.002.00------------1.00----------------1.00----------------------------
..................................................AAGCTGATGATATACTGATG....................................................................................................................................................................................2012.002.00-------------------2.00--------------------------------------
.................................................TAAGCTGATGATATACTGA......................................................................................................................................................................................1912.002.00-------1.00---1.00----------------------------------------------
.................................................TAAGCTGATGATATACTG.......................................................................................................................................................................................1811.001.00------------------------------1.00---------------------------
................................................................................................................................AATTTCTCTATTTCTCCCC.......................................................................................................191.000.00------------------------------------1.00---------------------
..........................................................................................................................................................................................................ATCCTCAAGCACTGAGCCTACTCAGTCTAACC................3211.001.00----------------------------------------1.00-----------------
.......................................................................................CATCCACTACAGTAAAG..................................................................................................................................................1711.001.00------------------------1.00---------------------------------
............................................................................................................................................................ATGATCATAACAAGAATG............................................................................1811.001.00----------------------------------------------------1.00-----
.........................................................................................................................................................................................................CATCCTCAAGCACTGAGCCTACTCA........................2511.001.00--------------------------------------------1.00-------------
.................................................TAAGCTGATGATATACTGTTG....................................................................................................................................................................................2111.001.00------------1.00---------------------------------------------
......................................................................................................................................................................................CTTCCAATCAGTCTCGAGCCATCCCA..........................................261.000.00----------------------------------------------1.00-----------
...............................................................................TCTGAACCCATCCACTACTGG......................................................................................................................................................211.000.00----------------------------1.00-----------------------------
.......................................................................................................................................................................AAGAATGATAAGATTCTTCCAATCA..........................................................2511.001.00-----------------------1.00----------------------------------
............................................................................................................................................................................TGATAAGATTCTTCCAATCA..........................................................2011.001.00-----------------------------------------------1.00----------
................................................GTAAGCTGATGATATACTGATGGTAAA...............................................................................................................................................................................271.000.00------------------------------------------1.00---------------
................................................GTAAGCTGATGATATACTGATGG...................................................................................................................................................................................2311.001.00----------------------------------1.00-----------------------
..........................................................................................................................................................................AATGATAAGATTCTTCCAATCAGTCTCGAGC.................................................3111.001.00--------------------------------1.00-------------------------
..........................................................................................................................................................................................................................CCTACTCAGTCTAACCTAAG............2011.001.00-------------------------------------------------------1.00--
.....................................................................GGTATTAGTTTCTGAACTCTG................................................................................................................................................................211.000.00-------------------------------1.00--------------------------
..........................................................................................................................................................................................CAATCAGTCTCGAGCACCA.............................................191.000.00-------1.00--------------------------------------------------

Antisense strand
AGTTTTTCATTAATTCTAAGTGTAAAGTGGTCCTAAAATTGTCTAGAAGTAAGCTGATGATATACTGATGGTATTAGTTTCTGAACCCATCCACTACAGTAAAGGGCTGGTTTCTGCCCATGTGAAGTAATTTCTCTATTTCTCATTTTCAGAGATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAGGTAAGATGATGT
.............................................((((...((((..........(((((..((((...))))..))))).....))))...((((........)))).((.((((((.......)))))).)).))))....................................................................................................
............................................45........................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................................GAGACTGATTGGAAG..................................................... 1550.200.20---------------------------------------------------------0.20