ID: uc011lyf.1_intron_1_0_chr9_123622464_r.3p
GENE: PHF19(8)
chr9:123622414-123622663-


(2)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(18)
CELL-LINE 		(7)
CERVIX 		(7)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(3)
OTHER 		(1)
OVARY 		(1)
RRP40.ip 		(32)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
CTCCAGGAGGTTTTTTTGACTTCTTGGACTTTGAAGGGTGGCTGGGTAGGAAACAGACAGGTGTGGTGGTGGGAAGCTCAGCTGTGGGAAGACGGGCCTCCACTGGGATGAAGGATGCATGTTAGGGGAACCTGCGGGCCAGGTTGGCAGGAACTTGCTGGGCCGGGCCACCAGCAGGCTCACGGTCTTGCCCCTCTCAGTGCCAGCTCAGGCCAGACCTTCTTCTCAGATGTCGACTCCACCGACGCTG
...........................................................(((.((..(((.(((.((((..((......))..)))).))).((((.(((.......))).))))....)))..)).)))..............................................................................................................
..................................................51...........................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR343336SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR343335SRR553574(SRX182780)
source: Heart. (Heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
..........................................................................................................................TAGGGGAACCTGCGG.................................................................................................................15172.0072.0015.0017.00--3.002.001.00-5.00-1.001.00--3.003.003.00-2.002.00-2.001.00-1.00----------1.00-2.00--1.00-1.00---------1.00------1.001.00---1.00------------------1.00-------
..........................................................................................................................TAGGGGAACCTGCGGA................................................................................................................16121.0072.005.00---3.00--1.00-1.003.00---1.00--2.001.00---1.00-----1.00-----------------------------1.00--1.00-----------------------------
..........................................................................................................................TAGGGGAACCTGCGGCTG..............................................................................................................18120.0072.00--5.00-1.001.001.00--3.00-------1.00-1.00----1.00-------2.001.00--1.00-1.00------------------------------------1.00---------------
..........................................................................................................................TAGGGGAACCTGCGGAAGG.............................................................................................................19116.0072.003.00------------------------1.00-----2.00--1.00----------------1.00-----------1.00----1.00-1.00-1.00-------1.00-1.00--1.00-1.00---
..........................................................................................................................TAGGGGAACCTGCGGAAG..............................................................................................................18115.0072.005.00-1.00-1.00------------------1.00--1.00--------------1.00-1.00------------------1.00----1.00--------1.00---------1.00----
..........................................................................................................................TAGGGGAACCTGCGGCTGG.............................................................................................................19112.0072.00-----2.00---1.00-1.00-1.00---------1.00---2.00-1.00------------------1.001.00---------------1.00-------------------------
..........................................................................................................................TAGGGGAACCTGCGGC................................................................................................................16112.0072.00-----1.002.004.00-------1.00----------------------1.001.00-------1.00------1.00------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGCT...............................................................................................................1719.0072.00---3.00--1.00---------------------------1.00----1.00-------------1.00---1.00-------------1.00-------------------
..........................................................................................................................TAGGGGAACCTGCGGTTG..............................................................................................................1816.0072.00---4.001.00------1.00-------------------------------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGAA...............................................................................................................1716.0072.00--3.00-1.00-----1.00--------------------------------------------------------------1.00-----------------
..........................................................................................................................TAGGGGAACCTGCGGTT...............................................................................................................1715.0072.00---3.00-------------------------1.00--------------1.00----------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGTTGG.............................................................................................................1914.0072.00-----------1.00-1.00-------------------------------1.00----1.00----------------------------------------
....................................................................GTGGGAAGCTCAGCTGTG....................................................................................................................................................................1814.004.00---------------------------------1.00----------------------------------------1.00--1.00---1.00---------
...................................................................GGTGGGAAGCTCAGCTGTGTAAT................................................................................................................................................................2313.001.00------------3.00------------------------------------------------------------------------------
.......................................................GACAGGTGTGGTGGTGGGCATC.............................................................................................................................................................................222.000.00--------------------2.00----------------------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGCTGA.............................................................................................................1912.0072.00------------------------------2.00------------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGTAGG.............................................................................................................1911.0072.00--------------------------1.00----------------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGAAGC.............................................................................................................1911.0072.00---1.00---------------------------------------------------------------------------------------
......................................................................GGGAAGCTCAGCTGTGTCAT................................................................................................................................................................201.000.00------------------------------------------------------------------------------------1.00------
..........................................................................................................................TAGGGGAACCTGCGGAACG.............................................................................................................1911.0072.00-------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................GTTGGCAGGAACTTGGGC..........................................................................................181.000.00--1.00----------------------------------------------------------------------------------------
....................................................................GTGGGAAGCTCAGCTGTGT...................................................................................................................................................................1911.004.00------------------------------------1.00------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGAAT..............................................................................................................1811.0072.00--------------------------------------------------------1.00----------------------------------
...................................................................GGTGGGAAGCTCAGCTGTG....................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00---------------------
...................................................................................................................................................CAGGAACTTGCTGGGTAA.....................................................................................181.000.00-------------------------------------------------------------------------------1.00-----------
..........................................................................................................................TAGGGGAACCTGCGGCTTG.............................................................................................................1911.0072.00----------------------------------------------1.00--------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGGA...............................................................................................................171.000.00--1.00----------------------------------------------------------------------------------------
...................................................................GGTGGGAAGCTCAGCTGTGT...................................................................................................................................................................2011.001.00------------------------------------------------------------------------------1.00------------
..............................................................................................................................................................................................................CTCAGGCCAGACCTTCTTCT........................2011.001.001.00------------------------------------------------------------------------------------------
..........................................................................................................................TAGGGGAACCTGCGGGGGCT............................................................................................................201.000.00-------------1.00-----------------------------------------------------------------------------
....................................................................GTGGGAAGCTCAGCTGTGTA..................................................................................................................................................................2011.004.00-------------------------------------------------------1.00-----------------------------------
..........................................................................................................................TAGGGGAACCTGCGGATC..............................................................................................................1811.0072.00------------------------------------------------------------------1.00------------------------
..........................................................................................................................TAGGGGAACCTGCGGTGGG.............................................................................................................1911.0072.00-------------1.00-----------------------------------------------------------------------------
....................................................................GTGGGAAGCTCAGCTGCGT...................................................................................................................................................................1930.670.33----------------------------------------------------------------------------------------0.330.33-
.....................................................................TGGGAAGCTCAGCTGTG....................................................................................................................................................................1720.500.50----------------0.50--------------------------------------------------------------------------
....................................................................GTGGGAAGCTCAGCTG......................................................................................................................................................................1630.330.33----------------------------------------0.33--------------------------------------------------
....................................................................GTGGGAAGCTCAGCTGCA....................................................................................................................................................................1830.330.33------------------------------------------------------------------------------------------0.33
...........................................................................................................................AGGGGAACCTGCGGG................................................................................................................1570.140.14----0.14--------------------------------------------------------------------------------------

Antisense strand
CTCCAGGAGGTTTTTTTGACTTCTTGGACTTTGAAGGGTGGCTGGGTAGGAAACAGACAGGTGTGGTGGTGGGAAGCTCAGCTGTGGGAAGACGGGCCTCCACTGGGATGAAGGATGCATGTTAGGGGAACCTGCGGGCCAGGTTGGCAGGAACTTGCTGGGCCGGGCCACCAGCAGGCTCACGGTCTTGCCCCTCTCAGTGCCAGCTCAGGCCAGACCTTCTTCTCAGATGTCGACTCCACCGACGCTG
...........................................................(((.((..(((.(((.((((..((......))..)))).))).((((.(((.......))).))))....)))..)).)))..............................................................................................................
..................................................51...........................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR343336SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR343335SRR553574(SRX182780)
source: Heart. (Heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
..................................................................................................................................................CCGGCCCAGCAAGTTCCTGC.................................................................................... 2011.001.00-----------------------------------1.00-------------------------------------------------------
..........................................................AGGTGTGGTGGTGGGTTTC............................................................................................................................................................................. 191.000.00----------------------------1.00--------------------------------------------------------------
............................................................................................................................................................................................................AGCTCAGGCCAGACCCCCA........................... 191.000.00------------1.00------------------------------------------------------------------------------