ID: uc011lxl.1_intron_8_0_chr9_116968093_f
GENE: (9)
chr9:116968043-116968581+


(1)
B-CELL
(2)
BRAIN
(4)
BREAST
(5)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGCCAGGACCTGAGGGCAGCCCAGGGGCCAAAGGTTACCCTGGCAGGCAGGTGCAGTATATGGCTTCTGGAAGCTCTGTGGCCATGGTGATGTGAAGATGGCCACAGGTGCCCCGAGGCAGAGGGAGGTGGTGGGCTGGGGGCCAAGGAGCTGCACCTGCTGGGTGGACCCTAAGGAGGGGGCTTTCCAGGGGACTGGACCAAGGAAGCCTGTCTTTGCAGGCACAGGATAAGGCTGCATAGTAAGAGGAGGTCTGGTTCTGCGGGGCTGGGGCTCCAGAGGCTCCTCCTACTCAGTCTCCCTCCTACCCACCAGCCACCTCCCTGGGATCCTAGGGCTGTGGGGGTCAGGCCAAAGATCGCTGATCTAACCCCACCCCCATTCTACAAAGAGAGCAGCAGAGGCCCCAAAGAGGCAGGACTTGCCCCAGGATTGGCAGCAGGTAGAGCGTCTCCATATGTCCTTGCCCCTCTGTGTTTTGTGTTTCAGGGGTTACCTGGACCGGTAGGAGATCCCGGCCCCAAAGGCAGCAGGGTAAG
......................................................................................................................................(((.((((((..((..((((.....(((((.((.((((......)))))).))))).((((..((((......((((((....)))))).(((.......))).............))))..)))).))))..))..))))))...)))................................................................................................................................................................................................................................................................
......................................................................................................................119.................................................................................................................................................................283..............................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR040037(GSM532922)
G243T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................................................................................................TGCGGGGCTGGGGCTAACA....................................................................................................................................................................................................................................................................196.000.00-4.00---1.00--------------------1.00------
...........................................................................................................................GGAGGTGGTGGGCTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................195.000.004.00-1.00------------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................194.000.002.00-1.00-------1.00----------------------
...........................................................................................................................GGAGGTGGTGGGCTGTATC.............................................................................................................................................................................................................................................................................................................................................................................................................193.000.002.00-1.00------------------------------
...........................................................................................................................................................................................................................................................GTCTGGTTCTGCGGGGCTGGGGCTCCAGAGGC................................................................................................................................................................................................................................................................3213.003.00----3.00----------------------------
....................................................................................................................................................................................................................................................................................CAGAGGCTCCTCCTACTCAGTC.................................................................................................................................................................................................................................................2212.002.00-------2.00-------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................192.000.001.00-1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGTTACCTGGACCGGTAGGAG............................2412.002.00---2.00-----------------------------
....................................................................................................................................................................................................................................................................TGCGGGGCTGGGGCTAAC.....................................................................................................................................................................................................................................................................182.000.00-1.00-------------1.00-----------------
...........................................................................................................................GGAGGTGGTGGGCTGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................182.000.002.00--------------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTATA.............................................................................................................................................................................................................................................................................................................................................................................................................192.000.001.00--------------------------1.00-----
...........................................................................................................................GGAGGTGGTGGGCTGTATG.............................................................................................................................................................................................................................................................................................................................................................................................................192.000.002.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGTAGAGCGAAA......................................................................................181.000.00--------1.00------------------------
....................................................................................................................................................................................................................................................................TGCGGGGCTGGGGCTAA......................................................................................................................................................................................................................................................................171.000.00-1.00-------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGATTGGCAGCAGGTAGA............................................................................................2211.001.00---------------------1.00-----------
...................................................................................................................AGGCAGAGGGAGGTGGTTCG....................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------1.00------------
...........................................................................................................................GGAGGTGGTGGGCTGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00--------------------------------
.........................................................................................................................AGGGAGGTGGTGGGCGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00--------------------------
......................................................................................................................CAGAGGGAGGTGGTGGGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00--------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00--------------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00--------------------------------
...........................................................................................................................GGAGGTGGTGGGCTGTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00--------------------------------
....................................................................................................................................................................................................................................................................TGCGGGGCTGGGGCTACCA....................................................................................................................................................................................................................................................................191.000.00------------------------1.00--------
............................................................................................................................GAGGTGGTGGGCTGGGGGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................211.000.00----------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTACCTGGACCGGTAGGA.............................2111.001.00----------------------------1.00----
...........................................................................................................................................................................................CAGGGGACTGGACCAAGGAAG...........................................................................................................................................................................................................................................................................................................................................2111.001.00-----------1.00---------------------
....................................................................................................................................................................................................................................................AGAGGAGGTCTGGTTCTGCGGGGCTG.............................................................................................................................................................................................................................................................................2611.001.00-----------------1.00---------------
............................................................................................................................GAGGTGGTGGGCTGGGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................221.000.00------------1.00--------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGGATTGGCAGCAGG................................................................................................1911.001.00------------------1.00--------------
............................................................................................................................GAGGTGGTGGGCTGGGGGGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------1.00-------------
....................................................................................................................................................................................................................................................................TGCGGGGCTGGGGCTAATA....................................................................................................................................................................................................................................................................191.000.00-1.00-------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCAGGTAGAGATTG.......................................................................................191.000.00-----1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGATTGGCAGCAGGTAG.............................................................................................2111.001.00-------------1.00-------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGCAGGTAGAGCGTCTCC....................................................................................2411.001.00--------------1.00------------------
...................................................................TGGAAGCTCTGTGGCCATGGGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00---1.00-----------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGGCAGGACTTG...................................................................................................................1720.500.50-----------------------------0.50---
..........................................................................................................................GGGAGGTGGTGGGCTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................1870.290.29---------0.14---------------------0.14-
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATTGGCAGCAG.................................................................................................1580.120.12--------------------------------0.12

Antisense strand
AGCCAGGACCTGAGGGCAGCCCAGGGGCCAAAGGTTACCCTGGCAGGCAGGTGCAGTATATGGCTTCTGGAAGCTCTGTGGCCATGGTGATGTGAAGATGGCCACAGGTGCCCCGAGGCAGAGGGAGGTGGTGGGCTGGGGGCCAAGGAGCTGCACCTGCTGGGTGGACCCTAAGGAGGGGGCTTTCCAGGGGACTGGACCAAGGAAGCCTGTCTTTGCAGGCACAGGATAAGGCTGCATAGTAAGAGGAGGTCTGGTTCTGCGGGGCTGGGGCTCCAGAGGCTCCTCCTACTCAGTCTCCCTCCTACCCACCAGCCACCTCCCTGGGATCCTAGGGCTGTGGGGGTCAGGCCAAAGATCGCTGATCTAACCCCACCCCCATTCTACAAAGAGAGCAGCAGAGGCCCCAAAGAGGCAGGACTTGCCCCAGGATTGGCAGCAGGTAGAGCGTCTCCATATGTCCTTGCCCCTCTGTGTTTTGTGTTTCAGGGGTTACCTGGACCGGTAGGAGATCCCGGCCCCAAAGGCAGCAGGGTAAG
......................................................................................................................................(((.((((((..((..((((.....(((((.((.((((......)))))).))))).((((..((((......((((((....)))))).(((.......))).............))))..)))).))))..))..))))))...)))................................................................................................................................................................................................................................................................
......................................................................................................................119.................................................................................................................................................................283..............................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR040037(GSM532922)
G243T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................GGGCCAAGGAGCTGCACGGCT........................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-----------------------1.00---------
...................................................................................................................................................................................................................................................................................................................................................................................CCCACCCCCATTCTACAGAA.................................................................................................................................................... 201.000.00--------1.00------------------------
..............................................................................................................................................................................................................................................................................................................................................................................CTAACCCCACCCCCATAAG.......................................................................................................................................................... 191.000.00-1.00-------------------------------
................................................................................................................................................................................................................................................................................................................GAGGTGGCTGGTGGGTAG......................................................................................................................................................................................................................... 1811.001.00-------------------------1.00-------
............................................................................................................................................................................................................................................................................................................................................................................................ATTCTACAAAGAGAGTTTG............................................................................................................................................ 191.000.00---------1.00-----------------------
.................................................................................................................................................................................................................................AGGATAAGGCTGCATTTTG....................................................................................................................................................................................................................................................................................................... 191.000.00-1.00-------------------------------
..................................................................................................................................................................................GGGGCTTTCCAGGGGTCT....................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------1.00----------
.....................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTAGAATGGGGGTG................................................................................................................................................... 1920.500.50------------------------------0.50--