| (2) B-CELL | (2) BREAST | (14) CELL-LINE | (1) CERVIX | (1) HEART | (2) HELA | (3) LIVER | (1) TESTES | (1) XRN.ip |
| TTCGTTAAGGCGAGAAGGGCTTCAGGTTATCTAACCTACCATATTGCTGGAAATAGAAGTTAAACCGTTTTTTTCCTAGTCTGTAACTGCCACTATTATGGTGATGATATAGGCTAAGTCTGAATATTTTATGTGAACATATTAGGAAAATTATCCTACTCTGCAAGTTTTGGACAATATTTTTTCTTTGTTTCCTCAAGAAACAGCCAGAGAACATTCTAAAGGCCAATCTGCTTGTGTCCACTTCAGA .............................................................................................((((((....))))))........(((..((.....((((....)))).(((((......)))))..........))..)))........................................................................... ...........................................................................................92................................................................................................190.......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR029129(GSM416758) SW480. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR037931(GSM510469) 293GFP. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR040028(GSM532913) G026N. (cervix) | GSM416733(GSM416733) HEK293. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015365(GSM380330) Memory B cells (MM139). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................TATGGTGATGATATAGGCTAAGTCTGAAT............................................................................................................................. | 29 | 1 | 41.00 | 41.00 | 9.00 | 9.00 | 9.00 | 5.00 | - | 3.00 | - | - | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................................TTTGGACAATATTTTTCT................................................................ | 18 | 6.00 | 0.00 | - | - | - | - | 3.00 | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................TATGGTGATGATATAGGCTAAG.................................................................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................................................TATGGTGATGATATAGGCTAAGTCTGAATA............................................................................................................................ | 30 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TACTCTGCAAGTTTTGGACAATATTT.................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ATATTTTTTCTTTGTTTCCTCTGC.................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTGGACAATATTTTTCTTC.............................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................AACAGCCAGAGAACATTCTAAAG.......................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................ATGGTGATGATATAGGCTAAGTCTGAAT............................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................TTTTTTTCCTAGTCTGTTGAT.................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................AAAGGCCAATCTGCTTGTGTCCACTTCAG. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......AAGGCGAGAAGGGCTTGAGT................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| TTCGTTAAGGCGAGAAGGGCTTCAGGTTATCTAACCTACCATATTGCTGGAAATAGAAGTTAAACCGTTTTTTTCCTAGTCTGTAACTGCCACTATTATGGTGATGATATAGGCTAAGTCTGAATATTTTATGTGAACATATTAGGAAAATTATCCTACTCTGCAAGTTTTGGACAATATTTTTTCTTTGTTTCCTCAAGAAACAGCCAGAGAACATTCTAAAGGCCAATCTGCTTGTGTCCACTTCAGA .............................................................................................((((((....))))))........(((..((.....((((....)))).(((((......)))))..........))..)))........................................................................... ...........................................................................................92................................................................................................190.......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR029129(GSM416758) SW480. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR037931(GSM510469) 293GFP. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR040028(GSM532913) G026N. (cervix) | GSM416733(GSM416733) HEK293. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015365(GSM380330) Memory B cells (MM139). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................AGGCCAATCTGCTTGTGTCCACTTCTA. | 27 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .............................................................................................................................................................................................................................AAGGCCAATCTGCTTGTGTCCACTTCAA. | 28 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................AGCAGATTGGCCTTTAGAATGTT............... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................TTCTCTGGCTGTTTCTT.................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |