ID: uc011luj.1_intron_0_0_chr9_97766569_f.3p
GENE: (1)
chr9:97767240-97767489+


(1)
AGO1.ip 		(4)
AGO2.ip 		(7)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(29)
CELL-LINE 		(13)
CERVIX 		(2)
FIBROBLAST 		(7)
HEART 		(3)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(33)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGGCCCCGCGCCCGCCGCCCGCGCCGCGCCTGAGGTGATGCGGACCCCGGGCGGGCGCAGGGCGCGGGCTCCGGCGCCGCCGCTGCGTCCTCCCCGGCCGCGGGCGAGGTACGGGGCGGGCACGCCGAGTTAGCGGGCGCGGGGCAGGGAGGCCGGGGCCGCTCCCGCGGTAAACTTGACTGTGTCCTCTTCCCCCGCAGCCGCTGCAGAGGGAGCGTCGCGCCGGGGCGGAGTGCGGGCTTGCGCGGCA
....................................................((((((((((((((........))).))).))))))))((((((....)))).))...............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532881(GSM532881)
G696N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
..........................................................AGGGCGCGGGCTCCGGCGG.............................................................................................................................................................................1918.006.00-2.00----1.003.00-1.00------------------------------------------------------------------------1.00--------------------------------------
...CCCCGCGCCCGCCGCTCGC....................................................................................................................................................................................................................................197.000.00----------------------1.00------1.00----------------------1.00-1.00----1.00---------------1.00------------1.00--------------------------------
..........................................................AGGGCGCGGGCTCCGGCG..............................................................................................................................................................................1816.006.00------1.001.00-------1.00---------------------------------------------------1.00---------------------------------------1.00---1.00---------
.....................................ATGCGGACCCCGGGCGGG...................................................................................................................................................................................................1814.004.001.00----------------1.00---------------------------------1.00-----------------------------------------------1.00---------------------
.............................................................................................CCGGCCGCGGGCGAGGGCC..........................................................................................................................................194.000.00---------------------2.00---------2.00-----------------------------------------------------------------------------------------
...................................................CGGGCGCAGGGCGCGGGCT....................................................................................................................................................................................1914.004.004.00------------------------------------------------------------------------------------------------------------------------
..............CCGCCCGCGCCGCGCCTGAGG.......................................................................................................................................................................................................................2113.003.00---3.00---------------------------------------------------------------------------------------------------------------------
..............................................CCGGGCGGGCGCAGGGCGCGGG......................................................................................................................................................................................2213.003.00--1.00---------------------1.00-------------------------1.00----------------------------------------------------------------------
.......................................................................................................................................................................................................GCCGCTGCAGAGGGAGCGT................................1913.003.003.00------------------------------------------------------------------------------------------------------------------------
.........................GCGCCTGAGGTGATGCGGA..............................................................................................................................................................................................................1913.003.003.00------------------------------------------------------------------------------------------------------------------------
...........................GCCTGAGGTGATGCGGACCC...........................................................................................................................................................................................................2012.002.00-----------------2.00-------------------------------------------------------------------------------------------------------
.................................................GGCGGGCGCAGGGCGCGGGCTT...................................................................................................................................................................................222.000.00--2.00----------------------------------------------------------------------------------------------------------------------
.............................................CCCGGGCGGGCGCAGGGCGCGG.......................................................................................................................................................................................2212.002.00------2.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTGACTGTGTCCTCTTCCCCCGCATTT................................................272.000.00-2.00-----------------------------------------------------------------------------------------------------------------------
..........................................GACCCCGGGCGGGCGCAGG.............................................................................................................................................................................................1912.002.00-------------2.00-----------------------------------------------------------------------------------------------------------
........................................................GCAGGGCGCGGGCTCCGG................................................................................................................................................................................1812.002.00--------1.00---------------------------------------------------------------------------------------------------1.00------------
...............................................................................................................................................................................TTGACTGTGTCCTCTTCCCCCGCAGAA................................................272.000.00---------------------------2.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................AACTTGACTGTGTCCTCTTCCCCCGCAG..................................................2812.002.00--------------1.00------------------------------------------1.00---------------------------------------------------------------
.......................................................................................................................................................................CGGTAAACTTGACTGTGTCCTCTTCCCCCGCAG..................................................3312.002.00-2.00-----------------------------------------------------------------------------------------------------------------------
.......................CCGCGCCTGAGGTGATGCGGAC.............................................................................................................................................................................................................2212.002.00--------------------------------2.00----------------------------------------------------------------------------------------
......................................................GCGCAGGGCGCGGGCTCCG.................................................................................................................................................................................1912.002.00-----2.00-------------------------------------------------------------------------------------------------------------------
..............CCGCCCGCGCCGCGCCTG..........................................................................................................................................................................................................................1822.002.00----------------------------------------1.500.50-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................AGTGCGGGCTTGCGC....1512.002.00-----------2.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................AACTTGACTGTGTCCTCTTCCCCCGCAGT.................................................2912.002.00----------------------------------------------1.00-----------------------------------------------------1.00--------------------
...................................................................................................................................................................................CTGTGTCCTCTTCCCCCGCAGA.................................................222.000.00-------------------------------------------------------1.00------------1.00----------------------------------------------------
........................................CGGACCCCGGGCGGGCGCA...............................................................................................................................................................................................1912.002.00------------1.00--------------------------------------------------------------------------1.00---------------------------------
............................CCTGAGGTGATGCGGACC............................................................................................................................................................................................................1811.001.00----------------------------------1.00--------------------------------------------------------------------------------------
.............................................CCCGGGCGGGCGCAGGGCGCGA.......................................................................................................................................................................................221.000.00-------------------------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................CTGTGTCCTCTTCCCCCGCAGAT................................................231.000.00----------------------------------1.00--------------------------------------------------------------------------------------
.......................................GCGGACCCCGGGCGGG...................................................................................................................................................................................................1611.001.00--------------------------------------------------------------------------------1.00----------------------------------------
..............CCGCCCGCGCCGCGCCTGAG........................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------------------1.00----------------
.....................................................GGCGCAGGGCGCGGGCTCCGGC...............................................................................................................................................................................2211.001.00---------------------------------------------------------------1.00---------------------------------------------------------
.......................................GCGGACCCCGGGCGGGC..................................................................................................................................................................................................1711.001.00----1.00--------------------------------------------------------------------------------------------------------------------
............................................................GGCGCGGGCTCCGGCGCG............................................................................................................................................................................181.000.00----------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGTGTCCTCTTCCCCCGCAGA.................................................211.000.00--------1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGACTGTGTCCTCTTCCCCCGCAG..................................................2411.001.00-------------------------1.00-----------------------------------------------------------------------------------------------
....................................................GGGCGCAGGGCGCGGGCTCCGGC...............................................................................................................................................................................2311.001.00-----------------------------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................ACTTGACTGTGTCCTCTTCCCCCGCAG..................................................2711.001.00---------------------------------1.00---------------------------------------------------------------------------------------
..........................................GACCCCGGGCGGGCGCAGGG............................................................................................................................................................................................2011.001.00----------1.00--------------------------------------------------------------------------------------------------------------
....................................................................................GCGTCCTCCCCGGCCGGGCG..................................................................................................................................................201.000.00----1.00--------------------------------------------------------------------------------------------------------------------
....................................GATGCGGACCCCGGGCGGGC..................................................................................................................................................................................................2011.001.00--------------------1.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGTGTCCTCTTCCCCCGCA...................................................2011.001.00------------------------------1.00------------------------------------------------------------------------------------------
...................................TGATGCGGACCCCGGGCGGGCGCAGGG............................................................................................................................................................................................2711.001.00-----1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................TAAACTTGACTGTGTCCTCTTCCCCCGCAGAA................................................321.000.00-------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................CCGCGGGCGAGGTACGG........................................................................................................................................1721.001.00-----1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................CTCTTCCCCCGCAGCCG...............................................1711.001.00--------------------------1.00----------------------------------------------------------------------------------------------
.............................................CCCGGGCGGGCGCAGGGCGCGGGC.....................................................................................................................................................................................2411.001.00-------------------------------------------------------------------------------------------------1.00-----------------------
....................................................................................................CGGGCGAGGTACGGGGC.....................................................................................................................................1711.001.00------------------------1.00------------------------------------------------------------------------------------------------
..............................................CCGGGCGGGCGCAGGGCGCGTT......................................................................................................................................................................................221.000.00-------------------------------------------------------------------------------1.00-----------------------------------------
................GCCCGCGCCGCGCCTGGACG......................................................................................................................................................................................................................201.000.00---------------------------------------------------------------------------------1.00---------------------------------------
..............CCGCCCGCGCCGCGCCTGAGGTT.....................................................................................................................................................................................................................2311.001.00--------1.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GCTGCAGAGGGAGCGTCG..............................1811.001.00-1.00-----------------------------------------------------------------------------------------------------------------------
..............CCGCCCGCGCCGCGCCTGAGGTA.....................................................................................................................................................................................................................2311.001.00----1.00--------------------------------------------------------------------------------------------------------------------
..............CCGCCCGCGCCGCGCCTGAGGT......................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------1.00-------------------------------------
...........................................................................................................................................................................AAACTTGACTGTGTCCTCTTCCCCCGCA...................................................2811.001.00----------------------------1.00--------------------------------------------------------------------------------------------
......................................................GCGCAGGGCGCGGGCTCCGGCGC.............................................................................................................................................................................2311.001.00----------------------1.00--------------------------------------------------------------------------------------------------
...............................................CGGGCGGGCGCAGGGTGG.........................................................................................................................................................................................181.000.00-------------------------------------------------------------------------1.00-----------------------------------------------
...CCCCGCGCCCGCCGCCGGGC...................................................................................................................................................................................................................................201.000.00---------1.00---------------------------------------------------------------------------------------------------------------
..............................................CCGGGCGGGCGCAGGGCGCGGGT.....................................................................................................................................................................................2311.003.00--1.00----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CAGCCGCTGCAGAGGGAGCG.................................2011.001.00---1.00---------------------------------------------------------------------------------------------------------------------
.................................................GGCGGGCGCAGGGCGCGGGCCA...................................................................................................................................................................................221.000.00--------------------------------------------------------------------------------------------------1.00----------------------
............................................................................................................GTACGGGGCGGGCACGCCG...........................................................................................................................1911.001.00-----------------------------------------------------------------------------------------1.00-------------------------------
...........................................................................................................GGTACGGGGCGGGCAAGA.............................................................................................................................181.000.00-----------------------------------1.00-------------------------------------------------------------------------------------
..................................................GCGGGCGCAGGGCGCGGGCTCCGGCGCCG...........................................................................................................................................................................2911.001.00-----------------------------1.00-------------------------------------------------------------------------------------------
................................AGGTGATGCGGACCCCGG........................................................................................................................................................................................................1811.001.00------------1.00------------------------------------------------------------------------------------------------------------
........................................CGGACCCCGGGCGGGCGCAGGGCG..........................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------1.00----------------------------------------------
....................................GATGCGGACCCCGGGGTC....................................................................................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------1.00-----------------
.............................................CCCGGGCGGGCGCAGGGCGCGGTCT....................................................................................................................................................................................2511.002.00-----------------------------------------------1.00-------------------------------------------------------------------------
......................................................GCGCAGGGCGCGGGCTCCGGCG..............................................................................................................................................................................2211.001.00------------------1.00------------------------------------------------------------------------------------------------------
.............................................CCCGGGCGGGCGCAGGGCGCGCTT.....................................................................................................................................................................................241.000.00-----------------------------------------------------------------------------------------------1.00-------------------------
..........................................................AGGGCGCGGGCTCCGG................................................................................................................................................................................1611.001.00---------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................GTACGGGGCGGGCACGCCGAGT........................................................................................................................2211.001.00-1.00-----------------------------------------------------------------------------------------------------------------------
......................GCCGCGCCTGAGGTGATG..................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------1.00--------------------------------------------------------
................GCCCGCGCCGCGCCTGGAC.......................................................................................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGGGCAGGGAGGCCGGGGGGGA........................................................................................231.000.00-----------------------------------------------------------------------------1.00-------------------------------------------
..............................................................................................................................................................................CTTGACTGTGTCCTCTTCCCCCGCAGAGA...............................................291.000.00-------------1.00-----------------------------------------------------------------------------------------------------------
..............CCGCCCGCGCCGCGCCTGAGGCT.....................................................................................................................................................................................................................2311.003.00------------------------------------------------------------------1.00------------------------------------------------------
.............................................................................................................................................................................ACTTGACTGTGTCCTCTTCCCCCGCAGA.................................................2811.001.00-----------------------------------------------------1.00-------------------------------------------------------------------
..................................................GCGGGCGCAGGGCGCGAGGC....................................................................................................................................................................................201.000.001.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACTTGACTGTGTCCTCTTCCCCCGCAGT.................................................2811.001.00--------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GGCGGAGTGCGGGCTTGC......1811.001.00------------------------------------------------------------1.00------------------------------------------------------------
.............GCCGCCCGCGCCGCGGCCC..........................................................................................................................................................................................................................191.000.00------------------------------------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGGAGCGTCGCGCCGGGG......................1911.001.00--------------------------------------------------------------1.00----------------------------------------------------------
.......................................................CGCAGGGCGCGGGCTCCGG................................................................................................................................................................................1911.001.00--------------1.00----------------------------------------------------------------------------------------------------------
..............................................CCGGGCGGGCGCAGGGCGCGGGTTT...................................................................................................................................................................................2511.003.00------------------------------------1.00------------------------------------------------------------------------------------
.......................................GCGGACCCCGGGCGGGCGCAGGTAAT.........................................................................................................................................................................................261.000.00-----------------------------------------1.00-------------------------------------------------------------------------------
...................................................CGGGCGCAGGGCGCGGGCTC...................................................................................................................................................................................2011.001.00----------------------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................................CGGGGCAGGGAGGCCGGGGCG..........................................................................................211.000.00-----------1.00-------------------------------------------------------------------------------------------------------------
..........................................................................................................AGGTACGGGGCGGGCAC...............................................................................................................................1711.001.00---------------------------------------------------------------------------------------------------------1.00---------------
...CCCCGCGCCCGCCGCTCG.....................................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------------------1.00-------------------
..............................................CCGGGCGGGCGCAGGGCGCGGTA.....................................................................................................................................................................................231.000.00--1.00----------------------------------------------------------------------------------------------------------------------
.........................GCGCCTGAGGTGATGCGGACCCCGGGCGGGCGCAGGGCGCGGGCTCCGG................................................................................................................................................................................4911.001.00--------------------------------------------------------------------------------------------------------------1.00----------
............................................CCCCGGGCGGGCGCAGGGCGCGA.......................................................................................................................................................................................231.000.00--1.00----------------------------------------------------------------------------------------------------------------------
....................................................GGGCGCAGGGCGCGGGCGCCT.................................................................................................................................................................................211.000.00----------------------------------------------------------------------1.00--------------------------------------------------
............................................CCCCGGGCGGGCGCAGGGCGCGG.......................................................................................................................................................................................2311.001.00--------------------------------------1.00----------------------------------------------------------------------------------
........................................................................................................................................................................GGTAAACTTGACTGTGTCCTCTTCCCCCGCAG..................................................3211.001.00-1.00-----------------------------------------------------------------------------------------------------------------------
....................................GATGCGGACCCCGGGCGGG...................................................................................................................................................................................................1911.001.00-------------------------------------1.00-----------------------------------------------------------------------------------
....................................................GGGCGCAGGGCGCGGGCTCCGGCGCCGCC.........................................................................................................................................................................2911.001.00----------------------------------------------------------------------------------------------1.00--------------------------
..........................................GACCCCGGGCGGGCGCAGGGCG..........................................................................................................................................................................................2211.001.00--------------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................CTTGACTGTGTCCTCTTCCCCCGCA...................................................2511.001.00-1.00-----------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGTGTCCTCTTCCCCCGCAGTA................................................231.000.00------------------------------------------------------------------------------------------------------1.00------------------
............................................................................................................GTACGGGGCGGGCACGCCGA..........................................................................................................................2011.001.00---1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................CGGGCGAGGTACGGGGCGGG..................................................................................................................................2011.001.00---------------------------------------------------------------------1.00---------------------------------------------------
.....................................ATGCGGACCCCGGGCGGGCG.................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------1.00------------------------------------
................................................GGGCGGGCGCAGGGCGCGGGCT....................................................................................................................................................................................2211.001.00--------------------------------------------------------1.00----------------------------------------------------------------
..........................................................................................................................................................................TAAACTTGACTGTGTCCTCTTCCCCCGCA...................................................2911.001.00----------------------------1.00--------------------------------------------------------------------------------------------
.............................................CCCGGGCGGGCGCAGGGCGAGT.......................................................................................................................................................................................221.000.00--------------------------------------------------------------------------------------1.00----------------------------------
..........................................................AGGGCGCGGGCTCCGGCGC.............................................................................................................................................................................1911.001.00-------------------------------------------1.00-----------------------------------------------------------------------------
............................................................................................................GTACGGGGCGGGCACGCCGAGTTAGCGGGT................................................................................................................301.000.00----------------------------------------------------------------------------------------------------------1.00--------------
.................................................................................................................................................................................................................AGGGAGCGTCGCGCCGGGGCGGAG.................2411.001.00---------------------------------------1.00---------------------------------------------------------------------------------
.................................GGTGATGCGGACCCCGGGCG.....................................................................................................................................................................................................2011.001.00-------------------------------------------------1.00-----------------------------------------------------------------------
.................................GGTGATGCGGACCCCGGG.......................................................................................................................................................................................................1811.001.00--------------------------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................................................AACTTGACTGTGTCCTCTTCCCCCGCA...................................................2711.001.00---1.00---------------------------------------------------------------------------------------------------------------------
........................................CGGACCCCGGGCGGGT..................................................................................................................................................................................................161.000.00------------------------------------------------------------------------------------------1.00------------------------------
.....................................ATGCGGACCCCGGGCGGGC..................................................................................................................................................................................................1911.001.00--------------------------1.00----------------------------------------------------------------------------------------------
.................................................GGCGGGCGCAGGGCGGACA......................................................................................................................................................................................191.000.00---------1.00---------------------------------------------------------------------------------------------------------------
...................................TGATGCGGACCCCGGGCGGGC..................................................................................................................................................................................................2111.001.00-------------------------1.00-----------------------------------------------------------------------------------------------
...........................................ACCCCGGGCGGGCGCAGGG............................................................................................................................................................................................1911.001.00------------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................GTACGGGGCGGGCACGCAAAA.........................................................................................................................211.000.00------------------------------------------------------------------------1.00------------------------------------------------
..........................................................AGGGCGCGGGCTCCGGAGGG............................................................................................................................................................................2011.001.00----1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................CGGGCGAGGTACGGGGCGGGCA................................................................................................................................2211.001.00-----------------------1.00-------------------------------------------------------------------------------------------------
..........................CGCCTGAGGTGATGCGGACCC...........................................................................................................................................................................................................2111.001.00---------------------------------------------1.00---------------------------------------------------------------------------
.................................GGTGATGCGGACCCCGGGCGGGC..................................................................................................................................................................................................2311.001.00-------------------------------------------------------------------------------------------1.00-----------------------------
............................................................................................................GTACGGGGCGGGCACGCCGAGTT.......................................................................................................................2311.001.00-------------------------------------------------------------1.00-----------------------------------------------------------
...........................................................................................................................................CGGGGCAGGGAGGCCGGGGCC..........................................................................................2111.001.00---------------1.00---------------------------------------------------------------------------------------------------------
.................................................GGCGGGCGCAGGGCGCGGGCTG...................................................................................................................................................................................221.000.00----------------------------------------------------------------------------1.00--------------------------------------------
.....................................................GGCGCAGGGCGCGGGCTCCGGCG..............................................................................................................................................................................2311.001.00---------------------------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGGAGCGTCGCGCCGGGGCGGAGT................2511.001.00----------1.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................GGTAAACTTGACTGTGTCCTCTT...........................................................2311.001.00------------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................CGCGGGGCAGGGAGGC.................................................................................................1630.670.67--------------------------------------------0.33-------------------------------------------------------------------------0.33--
...........................................................GGGCGCGGGCTCCGGCGC.............................................................................................................................................................................1820.500.50--------------------0.50----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GCAGAGGGAGCGTCGC.............................1620.500.50----------------------------------------------------------------------------------------------------------------0.50--------
................................................................................................................................................................................................................................GGGGCGGAGTGCGGGC..........1620.500.50------------------------------------------0.50------------------------------------------------------------------------------
....................................GATGCGGACCCCGGGC......................................................................................................................................................................................................1620.500.50-------------------------------------------------------------------------------------------------------------------0.50-----
................................................................CGGGCTCCGGCGCCGCCG........................................................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------------------------0.50----
...........................................................................................................................................................................................................CTGCAGAGGGAGCGTCGC.............................1820.500.50------------------------------------------------------------------------------------------------------------------0.50------
...............................................................................................................................................................................................................................CGGGGCGGAGTGCGGGC..........1720.500.50-----------------------------------------------------------------------------------------------------------------0.50-------
.........GCCCGCCGCCCGCGCCGCGC.............................................................................................................................................................................................................................2030.330.33-------------------------------------------0.33-----------------------------------------------------------------------------
.................................................................GGGCTCCGGCGCCGCCG........................................................................................................................................................................1730.330.33---------------------------------------------------------------------------------------------------------------------0.33---
..........................................................................................................................................................................................................GCTGCAGAGGGAGCG.................................1570.290.29------------------0.29------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GCCGGGGCCGCTCCC....................................................................................1550.200.20-----------------------------------------------------------------------------------------------------------------------0.20-
.................................................................................................................................................AGGGAGGCCGGGGCCG.........................................................................................1670.140.14------------------------------------------------------------------------------------------------------------------------0.14
.........GCCCGCCGCCCGCGCCGC...............................................................................................................................................................................................................................1870.140.14---------------------------------------------0.14---------------------------------------------------------------------------

Antisense strand
AGGCCCCGCGCCCGCCGCCCGCGCCGCGCCTGAGGTGATGCGGACCCCGGGCGGGCGCAGGGCGCGGGCTCCGGCGCCGCCGCTGCGTCCTCCCCGGCCGCGGGCGAGGTACGGGGCGGGCACGCCGAGTTAGCGGGCGCGGGGCAGGGAGGCCGGGGCCGCTCCCGCGGTAAACTTGACTGTGTCCTCTTCCCCCGCAGCCGCTGCAGAGGGAGCGTCGCGCCGGGGCGGAGTGCGGGCTTGCGCGGCA
....................................................((((((((((((((........))).))).))))))))((((((....)))).))...............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532881(GSM532881)
G696N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
......................................................................................................................................GGGCGCGGGGCAGGGTC................................................................................................... 171.000.00------------------------------------------1.00------------------------------------------------------------------------------
....................GCGCCGCGCCTGAGGAAT.................................................................................................................................................................................................................... 181.000.00-----------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................CGCGGGGCAGGGAGGCTCC.............................................................................................. 1931.000.00-------------------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................GGGCGCGGGGCAGGGTT................................................................................................... 171.000.00------------------------------------------------------------------------------1.00------------------------------------------
......................................................................................................................................................................................................................TCCGCCCCGGCGCGACGC.................. 1811.001.00--------1.00----------------------------------------------------------------------------------------------------------------
........CGCCCGCCGCCCGCGTCTG............................................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------------1.00-----------
......................................................................................................................................GGGCGCGGGGCAGGGAGTC................................................................................................. 191.000.00--------------------------------------------------------------------------------------------1.00----------------------------
...................................................................................................................................................GGAGGCCGGGGCCGCAGCG.................................................................................... 191.000.00-----------------------------------------------------------------1.00-------------------------------------------------------
........CGCCCGCCGCCCGCGTTAA............................................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------1.00-----------------------------------
........................................................................................................................................GCGCGGGGCAGGGAGGGCG............................................................................................... 191.000.00-----------------------------------------------------------------------1.00-------------------------------------------------
....................................................................................CGCGGCCGGGGAGGACGC.................................................................................................................................................... 1811.001.00--1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................GGGCGCGGGGCAGGGAGTCTC............................................................................................... 211.000.00---------------------------------------1.00---------------------------------------------------------------------------------
........................................................................................................................................................CCGGGGCCGCTCCCGGGAA............................................................................... 191.000.00----------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TCCCCCGCAGCCGCTGCG.......................................... 181.000.00---------------------------------------------------------------------------------------------1.00---------------------------
...................................................................................................................................................GGAGGCCGGGGCCGCTAGC.................................................................................... 191.000.00------------1.00------------------------------------------------------------------------------------------------------------
...CCCCGCGCCCGCCGCCAGC.................................................................................................................................................................................................................................... 191.000.00----------1.00--------------------------------------------------------------------------------------------------------------
.GGCCCCGCGCCCGCCGCGCG..................................................................................................................................................................................................................................... 201.000.00------------------------------------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTTCCCCCGCAGCCGAA............................................. 181.000.00------------------------------------------------------------------------------------------------1.00------------------------
...........................................................GGGCGCGGGCTCCGGCGCG............................................................................................................................................................................ 1921.000.00----1.00--------------------------------------------------------------------------------------------------------------------
.....GGCGCGGGCGGCGGGCGCGG................................................................................................................................................................................................................................. 2020.500.50-0.50-----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CCCGCACTCCGCCCCGG........... 1720.500.50--------------------0.50----------------------------------------------------------------------------------------------------
.........GCGGCGCGGGCGGCGGGC............................................................................................................................................................................................................................... 1870.140.14---------0.14---------------------------------------------------------------------------------------------------------------