ID: uc011ltv.1_intron_1_0_chr9_94797166_r.5p
GENE: SPTLC1(13)
chr9:94800330-94800579-


(1)
AGO1.ip 		(4)
B-CELL 		(14)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CTGGGTCTCGCGAGCAAGATGTCAGACTGCTTCAGGAAATTGTAGATCAAGTAAGTATCCGTTGACTTGAGGCATCCCCCCACACCACTTCTGCCCTTGCCCCAAGCAATTTTTTAATGTTAAATTTTTAAGAAAAGTCTCTTTGCCCTGAGAGAGAAGAGGGTAGAAAGGAAGATGCTGGTGACCCGCTCTTGACATGGAATCCTAATCCTCCAGGTCCTTCCTAGCTTCTGGCCATGGTAACAGGCAG
...................................................................((.((.....)).))..((..((((((((((...........((((((((..........))))))))..(((((((......))))))).)))))))))).))...............................................................................
...................................................................68.......................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormGSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR343337SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................TGAGAGAGAAGAGGGTATAGT.................................................................................21169.002.007.005.0010.006.008.005.008.007.004.002.003.00-----3.00----------------------------1.00-------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATTGT.................................................................................21133.002.005.008.006.003.001.003.002.00-1.001.001.001.00----------1.00------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATATT.................................................................................21119.002.003.003.003.00-2.002.002.00-1.001.00-1.00----1.00------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATTTT.................................................................................21114.002.004.003.00-1.001.002.00--1.001.00-1.00-----------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACAGT.................................................................................21110.002.002.001.001.001.00--1.001.001.002.00-------------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATAG..................................................................................2018.002.00---2.00----1.00-1.00-4.00----------------------------------------------
........................................................................................................................................................AGAGAAGAGGGTAGAAATAT..............................................................................205.000.00---------------5.00-------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACTTT.................................................................................2114.002.001.00--1.001.00--1.00---------------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTTTAT..................................................................................203.000.001.001.00--------1.00------------------------------------------------
...........GAGCAAGATGTCAGACTGCTTCAG.......................................................................................................................................................................................................................2413.003.00-----------------3.00-----------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACTGT.................................................................................2113.002.00-1.00--1.00--1.00---------------------------------------------------
.........GCGAGCAAGATGTCAGACT..............................................................................................................................................................................................................................1912.002.00--------------1.00---------1.00----------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTTTAG..................................................................................202.000.00-----------1.00----------1.00------------------------------------
......................CAGACTGCTTCAGGAAATTGTAGATCAATGC.....................................................................................................................................................................................................312.000.00--------------------------------------------1.00--------1.00-----
....................................................................................................................................................TGAGAGAGAAGAGGGTA.....................................................................................1712.002.00-1.001.00--------------------------------------------------------
........................................................................CATCCCCCCACACCACTATC..............................................................................................................................................................202.000.00----------------------------2.00------------------------------
..........CGAGCAAGATGTCAGACT..............................................................................................................................................................................................................................1812.002.00--------------2.00--------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATAT..................................................................................2012.002.00-1.00----------1.00----------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGCTCT...................................................................................192.000.001.00----1.00-----------------------------------------------------
.............GCAAGATGTCAGACTGCTTCAGGAAATTGTA..............................................................................................................................................................................................................3112.002.00--------------------------2.00--------------------------------
.................................AGGAAATTGTAGATCAATGC.....................................................................................................................................................................................................202.000.00---------------------2.00-------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATTG..................................................................................2012.002.001.00----------1.00-----------------------------------------------
.................................AGGAAATTGTAGATCAATG......................................................................................................................................................................................................192.000.00------------------2.00----------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACATT.................................................................................2112.002.00-1.00-1.00-------------------------------------------------------
......................................................................................................................................................................AAAGGAAGATGCTGGTGA..................................................................1811.001.00---------------------------1.00-------------------------------
.......................AGACTGCTTCAGGAAATTGTAGA............................................................................................................................................................................................................2311.001.00-----------------------------------1.00-----------------------
....................GTCAGACTGCTTCAGGAAATT.................................................................................................................................................................................................................2111.001.00-------------------------------------------------1.00---------
...............................TCAGGAAATTGTAGATC..........................................................................................................................................................................................................1711.001.00------------------------------1.00----------------------------
..GGGTCTCGCGAGCAAGATGTCAGACTG.............................................................................................................................................................................................................................2711.001.00----------------------------------------1.00------------------
............AGCAAGATGTCAGACTGCTTC.........................................................................................................................................................................................................................2111.001.00------------------------------------1.00----------------------
......................CAGACTGCTTCAGGAAATT.................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00---
....................................................................................................................................................TGAGAGAGAAGAGGGTTTTT..................................................................................201.000.00--1.00--------------------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGCTCA...................................................................................191.000.00--1.00--------------------------------------------------------
........................GACTGCTTCAGGAAATTGTAGATCAATG......................................................................................................................................................................................................281.000.00--------------------1.00--------------------------------------
............AGCAAGATGTCAGACTGCT...........................................................................................................................................................................................................................1911.001.00--------------1.00--------------------------------------------
........CGCGAGCAAGATGTCAGAC...............................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00-------
..................................................................TTGAGGCATCCCCCC.........................................................................................................................................................................1521.001.00--------------------------------------------------1.00--------
.......................AGACTGCTTCAGGAAATTGTAGATCAATG......................................................................................................................................................................................................291.000.00-----------------------1.00-----------------------------------
.......................AGACTGCTTCAGGAAATTA................................................................................................................................................................................................................191.000.00------------------------1.00----------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATATA.................................................................................2111.002.00---------1.00-------------------------------------------------
.......TCGCGAGCAAGATGTCAGACTGT............................................................................................................................................................................................................................231.000.00-------------------1.00---------------------------------------
.................................................................................................................................................................GGTAGAAAGGAAGATGCTGGTGACC................................................................2511.001.00---------------------------1.00-------------------------------
...........................TGCTTCAGGAAATTGTAGAC...........................................................................................................................................................................................................201.000.00--------------------1.00--------------------------------------
................AGATGTCAGACTGCTTCAGGAAATTGCAG.............................................................................................................................................................................................................2911.001.00-------------------------1.00---------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTTTTG..................................................................................201.000.00-----------1.00-----------------------------------------------
.......................................................................................................................................................................AAGGAAGATGCTGGTGACCCGCTCTTGACACGG..................................................331.000.00-------------------------------------------1.00---------------
.......................................................................................................................................................................AAGGAAGATGCTGGTGACT................................................................191.000.00--------------------------------------1.00--------------------
.....................TCAGACTGCTTCAGGAAATTGTAGAT...........................................................................................................................................................................................................2611.001.00-------------------1.00---------------------------------------
............................GCTTCAGGAAATTGTAGATCAATGCA....................................................................................................................................................................................................261.000.00-------------------------------------1.00---------------------
................AGATGTCAGACTGCTTCAGGAAATTG................................................................................................................................................................................................................2611.001.00------------------------------------------1.00----------------
.......................AGACTGCTTCAGGAAATTGTAGATC..........................................................................................................................................................................................................2511.001.00-----------------------1.00-----------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACTAT.................................................................................2111.002.00----------1.00------------------------------------------------
.........................ACTGCTTCAGGAAATTGTAGATCAAT.......................................................................................................................................................................................................261.000.00----------------------------------1.00------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACAG..................................................................................2011.002.00------------1.00----------------------------------------------
......................................ATTGTAGATCAAGTAAGTATCCGTTGACTTTTT...................................................................................................................................................................................331.000.00----------------------------------------------1.00------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATAAT.................................................................................2111.002.00---------1.00-------------------------------------------------
...............AAGATGTCAGACTGCTTCAG.......................................................................................................................................................................................................................2011.001.00------------------1.00----------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTTCTT..................................................................................201.000.00----1.00------------------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTATTTA.................................................................................2111.002.00--1.00--------------------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGCAT....................................................................................181.000.00-----1.00-----------------------------------------------------
..............................TTCAGGAAATTGTAGATCAATGCA....................................................................................................................................................................................................241.000.00---------------------------------------1.00-------------------
.................................AGGAAATTGTAGATCAAT.......................................................................................................................................................................................................181.000.00--------------1.00--------------------------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGTACTT..................................................................................2011.002.001.00----------------------------------------------------------
............AGCAAGATGTCAGACTGCTTCAGGA.....................................................................................................................................................................................................................2511.001.00-----------------------------------------------1.00-----------
.......................AGACTGCTTCAGGAAATTGTAG.............................................................................................................................................................................................................2211.001.00-------------------1.00---------------------------------------
.........................ACTGCTTCAGGAAATTGTAGATCAATGC.....................................................................................................................................................................................................281.000.00----------------------------------------------------1.00------
....................................................................................................................................................TGAGAGAGAAGAGGGTATTTG.................................................................................2111.002.00----------1.00------------------------------------------------
.....................TCAGACTGCTTCAGGAAATTGTAGATC..........................................................................................................................................................................................................2711.001.00---------------------------------1.00-------------------------
....................................................................................................................................................TGAGAGAGAAGAGGGCTT....................................................................................181.000.00-------1.00---------------------------------------------------
.....................................................................................................................................................GAGAGAGAAGAGGGTACCC..................................................................................191.000.00--------------------------------1.00--------------------------
.......................................................................................................................................................GAGAGAAGAGGGTAGAAAGGA..............................................................................2120.500.50---------------------------------------------------------0.50-
..............CAAGATGTCAGACTG.............................................................................................................................................................................................................................1540.250.25----------------------------------------------------------0.25

Antisense strand
CTGGGTCTCGCGAGCAAGATGTCAGACTGCTTCAGGAAATTGTAGATCAAGTAAGTATCCGTTGACTTGAGGCATCCCCCCACACCACTTCTGCCCTTGCCCCAAGCAATTTTTTAATGTTAAATTTTTAAGAAAAGTCTCTTTGCCCTGAGAGAGAAGAGGGTAGAAAGGAAGATGCTGGTGACCCGCTCTTGACATGGAATCCTAATCCTCCAGGTCCTTCCTAGCTTCTGGCCATGGTAACAGGCAG
...................................................................((.((.....)).))..((..((((((((((...........((((((((..........))))))))..(((((((......))))))).)))))))))).))...............................................................................
...................................................................68.......................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormGSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR343337SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................AAATTTTTAAGAAAAGTTC.............................................................................................................. 193.000.00-------------2.00----------------------------------------1.00----
.......................................................TATCCGTTGACTTGAAAA................................................................................................................................................................................. 182.000.00-----------------------------1.00------------------1.00----------
...........................................................................................................................ATTTTTAAGAAAAGTCTTT............................................................................................................ 192.000.00-------------1.00------------------------------------------1.00--
.........................................................................................................................AAATTTTTAAGAAAAGTCC.............................................................................................................. 191.000.00-------------1.00---------------------------------------------
............................................................................................GCCCTTGCCCCAAGCAACAG.......................................................................................................................................... 201.000.00-------------------------1.00---------------------------------
.......................................................................................................................................................................................................GAATCCTAATCCTCCTG.................................. 171.000.00--------1.00--------------------------------------------------
.........................................................................................................................AAATTTTTAAGAAAAGTGTTC............................................................................................................ 211.000.00-------------1.00---------------------------------------------
.............................................................................................................................................................................................TCTTGACATGGAATCTT............................................ 171.000.00-------------------------------1.00---------------------------
.........................................................................................................................AAATTTTTAAGAAAAGTCTTC............................................................................................................ 211.000.00-------------1.00---------------------------------------------