ID: uc011ltv.1_intron_0_0_chr9_94794809_r.3p
GENE: SPTLC1(14)
chr9:94794759-94795008-


(4)
AGO2.ip 		(4)
B-CELL 		(7)
BRAIN 		(3)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(11)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTTTGGTATTTTTAGCAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTTGGCCTCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCCACAAAGATAATTCTTTGTGTCCTTTACTGTTCTCAGCATTCGGGTTGTGGTCACGGTGGAACAAACAGAGGAAGAACTGGAGAGAGCTGCGTCCACCATCAAGGAGGTAGCCCAGGCC
................................................................((((((((.((((..((....))..((..((((((((((...(((((((........)))))))...((((((((....))))))))...........))))))))))..))..)))))))))).))...........................................................
..........................................................59....................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGGT.............................................................2314.004.00------------------------2.00-------------1.00--------------------1.00---------------------
........................................................................................................................................................................................................AGGAAGAACTGGAGAGAGCTGCGTCCACCACC..................323.000.00--3.00------------------------------------------------------------------------------
..........................................................................................................................................................................TTCGGGTTGTGGTCACGGTGGAA.........................................................2313.003.00----------1.00----------2.00-----------------------------------------------------------
.......................................................................................................................................................................................CACGGTGGAACAAACAGAG................................................1913.003.00--------3.00------------------------------------------------------------------------
................................................................................................................................................................................................................CTGGAGAGAGCTGCGTCCACC.....................2113.003.00---------------2.00--------------------------------------------1.00--------------------
.....................ATGGGGTTTCACTGTGTAGCC................................................................................................................................................................................................................213.000.00-2.001.00------------------------------------------------------------------------------
..........................................................................................................................................................................TTCGGGTTGTGGTCACGGTG............................................................2013.003.00----1.00-----1.00------------------1.00---------------------------------------------------
......................................................................................................................................................................................TCACGGTGGAACAAACAGA.................................................1913.003.00------2.00-------------------1.00------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGGTG............................................................2412.002.00----1.001.00---------------------------------------------------------------------------
.......................................................ATCTCCTGACCTCGTGATCCACCTGCCGGCC....................................................................................................................................................................312.000.00--2.00------------------------------------------------------------------------------
...........................................................................................................................................................................................GTGGAACAAACAGAGGAA.............................................1812.002.00------1.00--------------------------------------------------------------------1.00-----
.......................................................ATCTCCTGACCTCGTGATCCACCTGCTCTG.....................................................................................................................................................................302.000.00-2.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................GTGGAACAAACAGAGGAAGAACTGGAGAGA.................................3012.002.00------2.00--------------------------------------------------------------------------
.........TTTTTAGCAGAGATGGGGTTTGCCA........................................................................................................................................................................................................................252.000.00-2.00-------------------------------------------------------------------------------
...............................................................ACCTCGTGATCCACCTGCCTTGAG...................................................................................................................................................................242.000.00-----------2.00---------------------------------------------------------------------
............................................................................................................................................................................CGGGTTGTGGTCACGGTGGAAC........................................................2212.002.00----1.00---------1.00------------------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGG..............................................................2212.002.00-----1.00---------------------------------1.00-----------------------------------------
.....................ATGGGGTTTCACTGTGTTACTCT..............................................................................................................................................................................................................232.000.00-------------------------2.00-------------------------------------------------------
..........TTTTAGCAGAGATGGGGTTTGCC.........................................................................................................................................................................................................................232.000.00-2.00-------------------------------------------------------------------------------
.............................................................TGACCTCGTGATCCACCTGCGC.......................................................................................................................................................................222.000.00---------------------------2.00-----------------------------------------------------
............TTAGCAGAGATGGGGTTTGGTG........................................................................................................................................................................................................................222.000.00-2.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................AAACAGAGGAAGAACTGGAGAGAG................................2412.002.00------------------2.00--------------------------------------------------------------
..............................................................................................................................................................................GGTTGTGGTCACGGTGGAACAAAC....................................................2412.002.00------------2.00--------------------------------------------------------------------
.....................................................................................................................................................................................................CAGAGGAAGAACTGGAGAGAGCTGCGTCCA.......................3012.002.00---------2.00-----------------------------------------------------------------------
.......TATTTTTAGCAGAGATGGGGTTTGTC.........................................................................................................................................................................................................................262.000.00--2.00------------------------------------------------------------------------------
.........................................................................................................................................................................ATTCGGGTTGTGGTCACGGTGGAA.........................................................2412.002.00----------------------------------------1.00-------------1.00--------------------------
..............................................................................................................................................................................GGTTGTGGTCACGGTGGAACA.......................................................2112.002.00----1.00-----------------------------------------------------------1.00----------------
............................................................................................................................................................................................TGGAACAAACAGAGGAAGAACTGGAGAGAGCTGC............................3412.002.00---1.00---------1.00-------------------------------------------------------------------
..............AGCAGAGATGGGGTTCACT.........................................................................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------------------
..............AGCAGAGATGGGGTTTCACTGAGG....................................................................................................................................................................................................................241.000.00--1.00------------------------------------------------------------------------------
.........TTTTTAGCAGAGATGGGGACTC...........................................................................................................................................................................................................................221.000.00--1.00------------------------------------------------------------------------------
.......................................................ATCTCCTGACCTCGTGATCCACCTGCCCGGC....................................................................................................................................................................311.000.00-1.00-------------------------------------------------------------------------------
...........TTTAGCAGAGATGGGGTTTCACTGTGTTAGG................................................................................................................................................................................................................311.000.00-1.00-------------------------------------------------------------------------------
........ATTTTTAGCAGAGATGGGGTTTCACTGTGTC...................................................................................................................................................................................................................311.000.00--1.00------------------------------------------------------------------------------
...........TTTAGCAGAGATGGGGTTTCACTGCAT....................................................................................................................................................................................................................271.000.00--1.00------------------------------------------------------------------------------
.......................................................................................................................................................................................CACGGTGGAACAAACAGAGGAAG............................................2311.001.00-------1.00-------------------------------------------------------------------------
...........TTTAGCAGAGATGGGGTTTGCTG........................................................................................................................................................................................................................231.000.00-1.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................ACAGAGGAAGAACTGGAGAGAGCTGC............................2611.001.00-------------------------------------------------------1.00-------------------------
...........................................................................................................................................................................................................AAGAACTGGAGAGAGCTGCGTC.........................2211.001.00--------------------------------------------------------------------1.00------------
...........TTTAGCAGAGATGGGGTTTCAAAG.......................................................................................................................................................................................................................241.000.00--1.00------------------------------------------------------------------------------
..............................................................................................................................................................................GGTTGTGGTCACGGTGGAA.........................................................1911.001.00--------------1.00------------------------------------------------------------------
.....................ATGGGGTTTCACTGTGTTAGCCAGGAGGTC.......................................................................................................................................................................................................301.000.00-1.00-------------------------------------------------------------------------------
.......................................................................ATCCACCTGCCTTGGCCTCCAGGG...........................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................TTCGGGTTGTGGTCACGGTGGAACAAACAGAG................................................3211.001.00---1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................TCACGGTGGAACAAACAGAGGAA.............................................2311.001.00----------1.00----------------------------------------------------------------------
............................................................................................................................................................................CGGGTTGTGGTCACGGTGGAACA.......................................................2311.001.00--------------1.00------------------------------------------------------------------
.......................................................................................................................................................................................................GAGGAAGAACTGGAGAGAGCTGCGTCCACC.....................3011.001.00------------------------------------------------1.00--------------------------------
..............AGCAGAGATGGGGTTTCACTGTGTTC..................................................................................................................................................................................................................261.000.00--1.00------------------------------------------------------------------------------
................................................................................CCTTGGCCTCCAAAGTGCTGGGATTACAGGCAC.........................................................................................................................................331.000.00------------------------------------------------------------------------------1.00--
......................................................................................................................................................................................TCACGGTGGAACAAACAGAGGAAG............................................2411.001.00-------------------------------------------------------------------1.00-------------
.......TATTTTTAGCAGAGATGGGGTTTCATGG.......................................................................................................................................................................................................................281.000.00-1.00-------------------------------------------------------------------------------
..........TTTTAGCAGAGATGGGGTTTCCTCG.......................................................................................................................................................................................................................251.000.00-1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................ATTCGGGTTGTGGTCACGGT.............................................................2011.001.00-----------------------1.00---------------------------------------------------------
.............................................................................................................................................................................GGGTTGTGGTCACGGTGGAA.........................................................2011.001.00----------------------------------------------------------------------1.00----------
...............GCAGAGATGGGGTTTCACTGTGCC...................................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
...........TTTAGCAGAGATGGGGTTTCACTGTGTC...................................................................................................................................................................................................................281.000.00------------------------------------------1.00--------------------------------------
.........TTTTTAGCAGAGATGGGGTCTGG..........................................................................................................................................................................................................................231.000.00-1.00-------------------------------------------------------------------------------
.........TTTTTAGCAGAGATGGGGATCC...........................................................................................................................................................................................................................221.000.00--1.00------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GAGAGCTGCGTCCACCATCAA................2111.001.00-----------------1.00---------------------------------------------------------------
.............TAGCAGAGATGGGGTTTCACGGCG.....................................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
..............AGCAGAGATGGGGTTTCACTGTGAG...................................................................................................................................................................................................................251.000.00--1.00------------------------------------------------------------------------------
...................................................................................................................................................................................................AACAGAGGAAGAACTGGAGAG..................................2111.001.00----1.00----------------------------------------------------------------------------
........ATTTTTAGCAGAGATGGGGTTACC..........................................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................GTGGTCACGGTGGAACAAACAGAGG...............................................2511.001.00---1.00-----------------------------------------------------------------------------
................................................................................................................................................................................................ACAAACAGAGGAAGAACTGGAGAGAGC...............................2711.001.00-----------------------------------------------------------------1.00---------------
.......TATTTTTAGCAGAGATGGGGTTTCAACG.......................................................................................................................................................................................................................281.000.00--1.00------------------------------------------------------------------------------
.....................................................................................................................................................................................GTCACGGTGGAACAAACAGAGGAAG............................................2511.001.00----------------------1.00----------------------------------------------------------
.............TAGCAGAGATGGGGTTTCACTGTGCC...................................................................................................................................................................................................................261.000.00--1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................GGTGGAACAAACAGAGGAAGAACT........................................2411.001.00------------------------------------1.00--------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGGTGGA..........................................................2611.001.00-------------------------------------------------------------------------1.00-------
...........................................AGGATGGTCTCGATCTCCTTATA........................................................................................................................................................................................231.000.00-----1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................CGGTGGAACAAACAGAGGAAG............................................2111.001.00----------------------------------------------------------1.00----------------------
.........................................................................................................................................................................................CGGTGGAACAAACAGAGGAAGAACT........................................2511.001.00----------------------------1.00----------------------------------------------------
...........TTTAGCAGAGATGGGGAC.............................................................................................................................................................................................................................181.000.00--1.00------------------------------------------------------------------------------
.........................................................................................................................................................................ATTCGGGTTGTGGTCACGGTG............................................................2111.001.00-------1.00-------------------------------------------------------------------------
......................................................................................................................................................................................TCACGGTGGAACAAACAGAGG...............................................2111.001.00----------------1.00----------------------------------------------------------------
.................AGAGATGGGGTTTCACTGCGC....................................................................................................................................................................................................................211.000.00--1.00------------------------------------------------------------------------------
.........................................................................................................................................................................ATTCGGGTTGTGGTCACGGTGGAACA.......................................................2611.001.00-------------------------------------1.00-------------------------------------------
....................................................................................................................................................................................................ACAGAGGAAGAACTGGAGAGAG................................2211.001.00---------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................GGGTTGTGGTCACGGTGGAACAAACAGAGGAAGA...........................................3411.001.00---1.00-----------------------------------------------------------------------------
............................................................................................................................................................................CGGGTTGTGGTCACGG..............................................................1611.001.00----------------------------------------------------------------------------1.00----
...............................................................................................................................................................................GTTGTGGTCACGGTGGAA.........................................................1811.001.00--------------------------1.00------------------------------------------------------
.......TATTTTTAGCAGAGATGGGGTTTGT..........................................................................................................................................................................................................................251.000.00--1.00------------------------------------------------------------------------------
.......TATTTTTAGCAGAGATGGGGACT............................................................................................................................................................................................................................231.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTC..................................................................1811.001.00-------------------------------1.00-------------------------------------------------
.........TTTTTAGCAGAGATGGGGTTCTCC.........................................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................AACTGGAGAGAGCTGCGTCCACCATC..................2611.001.00-----------------------------1.00---------------------------------------------------
......................................................................................................................................................................................................AGAGGAAGAACTGGAGAGAGCTGC............................2411.001.00----------------------------------------------------1.00----------------------------
....................................................................................................................................................................................GGTCACGGTGGAACAAACAGAGGAAG............................................2611.001.00---------------------------------------------------------------------1.00-----------
...........TTTAGCAGAGATGGGGTTTCCTC........................................................................................................................................................................................................................231.000.00--1.00------------------------------------------------------------------------------
.......................................................................................................................................................................GCATTCGGGTTGTGGTCACGGTGGT..........................................................251.000.00-------1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................GTCACGGTGGAACAAACAGAGGAA.............................................2411.001.00------------------------------1.00--------------------------------------------------
................................................................................................................................................................................................................CTGGAGAGAGCTGCGTCCAC......................2011.001.00--------------------------------------------------------1.00------------------------
.................................TGTGTTAGCCAGGATGGTCTGACC.................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
..................................................TCTCGATCTCCTGACCTCGTTAG.................................................................................................................................................................................231.000.00--------------------------------------------------------------------------1.00------
................................................................CCTCGTGATCCACCTGCCTTGAG...................................................................................................................................................................231.000.00-----------1.00---------------------------------------------------------------------
...................................................................................................................................................................................TGGTCACGGTGGAACAAACAGAGGAA.............................................2611.001.00----------------------------------------------1.00----------------------------------
.....................................TTAGCCAGGATGGTCTCGACCCT..............................................................................................................................................................................................231.000.00-1.00-------------------------------------------------------------------------------
............TTAGCAGAGATGGGGTTTCACTCCG.....................................................................................................................................................................................................................251.000.00-1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................AAACAGAGGAAGAACTGGAGAGAGCTGCGTCCA.......................3311.001.00-------------------1.00-------------------------------------------------------------
.........TTTTTAGCAGAGATGGGGTTTGCC.........................................................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................GTGGAACAAACAGAGGAAGAACTGGAGAGT.................................301.000.00-------------1.00-------------------------------------------------------------------
..........................................................................................................................CGCCTGGCCCACAAAGATAATTCTT.......................................................................................................2511.001.00----------------------1.00----------------------------------------------------------
..........................................................................................................................................................................TTCGGGTTGTGGTCACGGTGG...........................................................2111.001.00------------------------------1.00--------------------------------------------------
................................................................................................................................................................................TTGTGGTCACGGTGGAAA........................................................181.000.00-------------------------------------------1.00-------------------------------------
............................TTCACTGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................................................271.000.00-1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................GTGGAACAAACAGAGGAAGAACTGGAGA...................................2811.001.00-------------1.00-------------------------------------------------------------------
.....................ATGGGGTTTCACTGTGTTAGCCAGGATGGCCC.....................................................................................................................................................................................................321.000.00-1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................CAAACAGAGGAAGAACTG.......................................1811.001.00------------------------------------------------------------------------1.00--------
.......TATTTTTAGCAGAGATGGGGTTTCACTGGGG....................................................................................................................................................................................................................311.000.00-1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................................AGGAAGAACTGGAGAGAGCTGC............................2211.001.00----------------------------------1.00----------------------------------------------
........ATTTTTAGCAGAGATGGGGGTGC...........................................................................................................................................................................................................................231.000.00--1.00------------------------------------------------------------------------------
...........TTTAGCAGAGATGGGGCC.............................................................................................................................................................................................................................181.000.00--1.00------------------------------------------------------------------------------
.............................TCACTGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................................................261.000.00-1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................GTGGTCACGGTGGAACAAACATAGG...............................................251.000.00---1.00-----------------------------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGGTA............................................................2411.004.00-----------------------------------------1.00---------------------------------------
.......................................................................................................................................................................................................GAGGAAGAACTGGAGAGAGCTGCTTC.........................261.000.00---1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................TCACGGTGGAACAAACAGAGGAAGAACT........................................2811.001.00--------1.00------------------------------------------------------------------------
........ATTTTTAGCAGAGATGGGGACT............................................................................................................................................................................................................................221.000.00--1.00------------------------------------------------------------------------------
............................................................................................................................................................................CGGGTTGTGGTCACGGTGG...........................................................1911.001.00----1.00----------------------------------------------------------------------------
...............................ACTGTGTTAGCCAGGATGGTCTCGATCTCGGG...........................................................................................................................................................................................321.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGT...................................................................1711.001.00---1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................AACAGAGGAAGAACTGGA.....................................1811.001.00-----1.00---------------------------------------------------------------------------
...................................................................................................................................................................................................................GAGAGAGCTGCGTCCAC......................1711.001.00-----------------1.00---------------------------------------------------------------
........ATTTTTAGCAGAGATGGGGCTC............................................................................................................................................................................................................................221.000.00--1.00------------------------------------------------------------------------------
.......................................................................ATCCACCTGCCTTGGCCTCCAAAGTGTCGG.....................................................................................................................................................301.000.00-1.00-------------------------------------------------------------------------------
.....................................................................................................................................................................................................CAGAGGAAGAACTGGAGAGAG................................2111.001.00---------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................CAGAGGAAGAACTGGAGAGAGCTGCGTTCA.......................301.000.00---------1.00-----------------------------------------------------------------------
...................AGATGGGGTTTCACTGTGTTAG.................................................................................................................................................................................................................2201.001.00-------------------------------------------------------------1.00-------------------
..............AGCAGAGATGGGGTTTCACTGAGT....................................................................................................................................................................................................................241.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................................................AGCATTCGGGTTGTGGTCACGGTGGAAC........................................................2811.001.00---1.00-----------------------------------------------------------------------------
...............................ACTGTGTTAGCCAGGATGGTCTCGACCCC..............................................................................................................................................................................................291.000.00-1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................GAGGAAGAACTGGAGAGAGC...............................2011.001.00---------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................GTGGTCACGGTGGAACAAAC....................................................2011.001.00----------------------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................GAGAGCTGCGTCCACCATC..................1911.001.00--------------------------------------------------------------1.00------------------
..........TTTTAGCAGAGATGGGGTTACCA.........................................................................................................................................................................................................................231.000.00-1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................GCATTCGGGTTGTGGTCACGGTG............................................................2311.001.00-----1.00---------------------------------------------------------------------------
.............TAGCAGAGATGGGGTGGGG..........................................................................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------------------
.................................TGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................................................221.000.00-1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................GCATTCGGGTTGTGGTCACGG..............................................................2111.001.00-------------------1.00-------------------------------------------------------------
.......TATTTTTAGCAGAGATGGGGTTTCATGTG......................................................................................................................................................................................................................291.000.00--1.00------------------------------------------------------------------------------
.............................................................TGACCTCGTGATCCACCTGCCTTGGCCGCC...............................................................................................................................................................301.000.00--1.00------------------------------------------------------------------------------
........ATTTTTAGCAGAGATGGGGGTTA...........................................................................................................................................................................................................................231.000.00--1.00------------------------------------------------------------------------------
........................................................................................................................................................................................................AGGAAGAACTGGAGAGAG................................1830.670.67-------------------------------------------------------------------------------0.67-
..................................................................................................................................................................................................AAACAGAGGAAGAACTGG......................................1820.500.50---------------0.50-----------------------------------------------------------------
...........................................................................................................................................................................................GTGGAACAAACAGAGG...............................................1620.500.50----------------0.50----------------------------------------------------------------
......................................................................................................................................................................................................AGAGGAAGAACTGGAGAG..................................1820.500.50-------------------------------0.50-------------------------------------------------
......................................................................................................................................................................................................AGAGGAAGAACTGGAGAGAG................................2020.500.50--------------------------------------------------------------------------------0.50

Antisense strand
TTTTTGGTATTTTTAGCAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTTGGCCTCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCCACAAAGATAATTCTTTGTGTCCTTTACTGTTCTCAGCATTCGGGTTGTGGTCACGGTGGAACAAACAGAGGAAGAACTGGAGAGAGCTGCGTCCACCATCAAGGAGGTAGCCCAGGCC
................................................................((((((((.((((..((....))..((..((((((((((...(((((((........)))))))...((((((((....))))))))...........))))))))))..))..)))))))))).))...........................................................
..........................................................59....................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
......................................................................................................................................AAAGATAATTCTTTGTTG.................................................................................................. 1862.000.0062.00--------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTAG.................................................................................................. 188.000.008.00--------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTCG.................................................................................................. 187.000.007.00--------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTCGTGGCC................................................................................................................................................................................ 305.000.00-5.00-------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTTT.................................................................................................. 183.000.003.00--------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGATG.................................................................................................. 182.000.002.00--------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGAGACC...................................................................................................................................................................................... 241.000.00--1.00------------------------------------------------------------------------------
.........................................................................CCACCTGCCTTGGCCTCCACT............................................................................................................................................................ 211.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTTGG................................................................................................. 191.000.00-----------------------1.00---------------------------------------------------------
.......................................AGCCAGGATGGTCTCGATCTCCTCTG......................................................................................................................................................................................... 261.000.00--------------------------------1.00------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTGGT.................................................................................................................................................................................... 261.000.00-1.00-------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTCGTGGTT................................................................................................................................................................................ 301.000.00-1.00-------------------------------------------------------------------------------
......................................TAGCCAGGATGGTCTCGATCTCCTC........................................................................................................................................................................................... 251.000.00-----------------------------------1.00---------------------------------------------
.................AGAGATGGGGTTTCACTGTGTTAGCCTA............................................................................................................................................................................................................. 281.000.00-----------------------------------------------------------------------------1.00---
..........................................................................CACCTGCCTTGGCCTCCAAAGTGCTCT..................................................................................................................................................... 271.000.00-1.00-------------------------------------------------------------------------------
..........................................CAGGATGGTCTCGATCTCCCCTA......................................................................................................................................................................................... 231.000.00------------------------------------------------------------------1.00--------------
......................................................................................................................................AAAGATAATTCTTTGTTGT................................................................................................. 191.000.001.00--------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGGTG........................................................................................................................................................................................ 221.000.00--1.00------------------------------------------------------------------------------
................................................................................CCTTGGCCTCCAAAGTGCTGGGATTAGAAG............................................................................................................................................ 301.000.00--1.00------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCGCC........................................................................................................................................................................................... 191.000.00-----------------------------------------------1.00---------------------------------
........................................................TCTCCTGACCTCGTGATCCACA............................................................................................................................................................................ 221.000.00-------------------------------------------------1.00-------------------------------
................................................GGTCTCGATCTCCTGACCTCGTCGGC................................................................................................................................................................................ 261.000.00-1.00-------------------------------------------------------------------------------
...........................................................CCTGACCTCGTGATCCACCTTTTG....................................................................................................................................................................... 241.000.00-1.00-------------------------------------------------------------------------------
............TTAGCAGAGATGGGGTTTCACA........................................................................................................................................................................................................................ 221.000.00---------------------------------1.00-----------------------------------------------
..........................................CAGGATGGTCTCGATCTCCTGC.......................................................................................................................................................................................... 221.000.00-----------------------------------------------------1.00---------------------------
..........................................CAGGATGGTCTCGATCTCCCC........................................................................................................................................................................................... 211.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTAC.................................................................................................. 181.000.001.00--------------------------------------------------------------------------------
..............................CACTGTGTTAGCCAGGATGGTCTCGGTTG............................................................................................................................................................................................... 291.000.00----------------1.00----------------------------------------------------------------
.............................................................TGACCTCGTGATCCACCG........................................................................................................................................................................... 181.000.00--------------------1.00------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTT................................................................................................... 171.000.001.00--------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTGGCA................................................................................................................................................................................... 271.000.00-1.00-------------------------------------------------------------------------------
................................................................................................................................GCCCACAAAGATAATTCTTTGTT................................................................................................... 231.000.00---------------------------------------------------1.00-----------------------------
............................................GGATGGTCTCGATCTCCTGACCTGC..................................................................................................................................................................................... 251.000.00--1.00------------------------------------------------------------------------------
.......................................................................................CTCCAAAGTGCTGGGATTAACTC............................................................................................................................................ 231.000.00-1.00-------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTCGGGCA................................................................................................................................................................................. 291.000.00-1.00-------------------------------------------------------------------------------
....................................................................................................................................ACAAAGATAATTCTTTGTTG.................................................................................................. 201.000.001.00--------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTCA.................................................................................................. 181.000.001.00--------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTTA.................................................................................................. 181.000.001.00--------------------------------------------------------------------------------
................................................................CCTCGTGATCCACCTGCCTCATG................................................................................................................................................................... 231.000.00--1.00------------------------------------------------------------------------------
........................................................TCTCCTGACCTCGTGATCCACCTGCCTCCC.................................................................................................................................................................... 301.000.00--1.00------------------------------------------------------------------------------
.......................................AGCCAGGATGGTCTCGATCTCCTCTTT........................................................................................................................................................................................ 271.000.00-------1.00-------------------------------------------------------------------------
................................................GGTCTCGATCTCCTGACCTCGTGACAGG.............................................................................................................................................................................. 281.000.00--1.00------------------------------------------------------------------------------
............................................GGATGGTCTCGATCTCCTGACCTCGTGGCG................................................................................................................................................................................ 301.000.00-1.00-------------------------------------------------------------------------------
...................................................CTCGATCTCCTGACCTCGTGATCCACCGCCA........................................................................................................................................................................ 311.000.00--------------------------------------------1.00------------------------------------
..................................................................................TTGGCCTCCAAAGTGCTGGGAAAA................................................................................................................................................ 241.000.00--------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................................AGAGCTGCGTCCACCATAA................. 191.000.00-----------------------------------------------------------------------1.00---------
............................................GGATGGTCTCGATCTCCTGACCTGAC.................................................................................................................................................................................... 261.000.00--1.00------------------------------------------------------------------------------
......................................................................................................................................AAAGATAATTCTTTGTTC.................................................................................................. 181.000.001.00--------------------------------------------------------------------------------
......................................................................................AATCCCAGCACTTTGGAGG................................................................................................................................................. 1901.001.00--------------------1.00------------------------------------------------------------
........................................................TCTCCTGACCTCGTGATCCACCTGCCTTCCC................................................................................................................................................................... 311.000.00--1.00------------------------------------------------------------------------------
.........................................................CTCCTGACCTCGTGATCCACAA........................................................................................................................................................................... 221.000.00------------1.00--------------------------------------------------------------------