ID: uc011lsw.1_intron_0_0_chr9_86584356_r.3p
GENE: (10)
chr9:86584306-86584555-


(1)
AGO2.ip 		(7)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(21)
CELL-LINE 		(7)
HEART 		(7)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(4)
OTHER 		(16)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TACTAATGTCCGATTTACTACTCATCATTTTTCTTGACACTTAACATTGCTTTAATTTGTAATTGCTAATGGTTTTTGAACTCTTCTAATTGTAATGGACGTGTTTATCATTTTAATTTAGCATTGAAATTGTCTTGATGTTGATTAAGATGTTACGAGCAAAAATTCTAATTCGCACTTTTTTTTCTTTTCTTTTATAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAATGCAAGATATTTTTTC
..........................................................................................(((((.(((((((.....((((((((.((((((((((.......)))))))))))))))))).)))).((..............))..............))).)))))...................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.........................................................................................................................CATTGAAATTGTCTTGATGTTGATTAAGATGTTACGAGCAAAAATTCTAATTCGCACTTTTTTTT................................................................65112.0012.00--12.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGCAAGAT........2019.009.00---5.00--1.00-----1.00-------------------------2.00-------------------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATT....................1918.008.00-----------3.00-------------------------2.00-----------------------------1.001.00-1.00-----------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTG......................................................205.000.002.00----1.00-2.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGAT.....................2015.005.00-------------4.00----1.00---------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTGG.....................................................214.000.004.00---------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGCAAG..........1814.004.00------1.00-----------------------------1.00------------------------------------1.00-1.00------
...........................................................................................................................................................................................................................GTTGAAGGATTCTAATGCA............1914.004.00--------------4.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................AAGGATTCTAATGCAAGAT........1914.004.00----------1.00----1.00---------------------------1.00-------------------1.00------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCAAGATA.......2514.004.00------------3.00-----------------1.00---------------------------------------------------
......................................................................................................................................................................................................................CAGATGTTGAAGGATTCT..................1813.003.00---3.00------------------------------------------------------------------------------
.................................................................................................................................................................................CTTTTTTTTCTTTTCTTTTAG....................................................213.000.00-----2.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................................CTAATTCGCACTTTTCG..................................................................173.000.00-----------------3.00----------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGCAAGATA.......2113.003.00------2.00----------------------------------------------------------------------1.00----
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGAT.....................1812.002.00------------------2.00---------------------------------------------------------------
.......................................................................................................................................................................................................GTGTGAAGCAGTATGCAGATGT.............................2212.002.00---2.00------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GCAGATGTTGAAGGATTC...................1812.002.00-----------------------------2.00----------------------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTCTA.................2112.002.00-----------------------------------2.00----------------------------------------------
.............................................................................................................................................................AGCAAAAATTCTAATTCGCACTTTTTTTTC...............................................................3012.002.00---------------------------2.00------------------------------------------------------
............................................................................................................................TGAAATTGTCTTGATGTTGATTAAGATGTTACGAGCAAAAATTCTAATTCGCACTTTTTTTTCTTTTC..........................................................6812.002.00----------------------------------------2.00-----------------------------------------
..............................................................................................................................................................................................................GCAGTATGCAGATGTTGAAGGATTCTAATGCAA...........3312.002.00----------------------------1.00--1.00--------------------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTCTAATGC.............2512.002.00-1.00---------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................................AGCAGTATGCAGATGTTGAAG........................2112.002.00-------------------------2.00--------------------------------------------------------
......................................................................................................................................................................................TTTTCTTTTCTTTTATATAG................................................202.000.00-----2.00----------------------------------------------------------------------------
..................................................................................................................................................................AAATTCTAATTCGCACTTTTTTTTCTTTTCTTTTATAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAATGCAAGATA.......8112.002.00---------------------------------------2.00------------------------------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGTTGAAGGACTC...................2712.001.00-2.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ATGTTGAAGGATTCTAATGC.............2012.002.00---------------------------------2.00------------------------------------------------
...........................................................................................................................................................................................................................GTTGAAGGATTCTAATGCAAG..........2112.002.00------1.00----------------1.00----------------------------------------------------------
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGGATTCTA.................2512.002.00--------------------2.00-------------------------------------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATTCTAACGCA............2712.001.001.001.00--------------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTGAG....................................................222.000.002.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCT............202.000.00--------------------------------2.00-------------------------------------------------
...........................................................................................................................................................................TTCGCACTTTTTTTTCAG.............................................................182.000.00----------------2.00-----------------------------------------------------------------
........................................................................................................................................................................................TTCTTTTCTTTTATAGTGTAGGC...........................................232.000.00-2.00--------------------------------------------------------------------------------
...................................................................................................................................................................................................................................ATTCTAATGCAAGATATTTTTTCCTCT271.000.00----1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGAAGGATTCTAATGCAAG..........1911.001.00----------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................................................TATGCAGATGTTGAAGGATTCTAACG..............261.000.00----1.00-----------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTTAAATG.................................................251.000.00-----1.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCA............2011.001.00----------------------------------------------1.00-----------------------------------
......................................................................................................................................................................................................................CAGATGTTGAAGGATTCTAATGCAAGATATTTT...3311.001.00-------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATTCTAATGC.............2611.001.00----------------------------------1.00-----------------------------------------------
..............................................................................................................................................................................................................GCAGTATGCAGATGTTGAAGGATTCTA.................2711.001.00---------------1.00------------------------------------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTTT..................2011.001.00-----------1.00----------------------------------------------------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCTTTTTTTG..................................................251.000.00--------------------------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCAAGATATT.....2711.001.00---------------------------------------------------------1.00------------------------
...............................................................................................................................................................................................................CAGTATGCAGATGTTGAAGGATTCTAA................2711.001.00---------1.00------------------------------------------------------------------------
.........................................................................................................................................................................AATTCGCACTTTTTTTTCTTTTCTTTC......................................................271.000.001.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGAAGGATTCTAATGCAAGATATTTTT..2711.001.00---1.00------------------------------------------------------------------------------
...........................................................................................................................................................................TTCGCACTTTTTTTTCTTTTCTTTTACAG..................................................291.000.001.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGGATTCT..................2411.001.00------1.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTC...................2211.001.00--------------------------------------------------------------1.00-------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTCTAACGC.............251.000.001.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATG..............1811.001.00----------------------------1.00-----------------------------------------------------
...................................................................................................................................................................................................TATAGTGTGAAGCAGGAT.....................................181.000.00--------1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGTTGAAGGATTCTAATGCAAGATA.......2811.001.00-----------------------------------------------------1.00----------------------------
..................................................................................................................................................................AAATTCTAATTCGCACTTTTTTTTCT..............................................................2611.001.00------------------------------------------------------1.00---------------------------
...............................................................................................................................................................................................................CAGTATGCAGATGTTGAAGGATTCTA.................2611.001.00---------------------------------------------------------------------1.00------------
.........................................................................................................................................................................AATTCGCACTTTTTTG.................................................................161.000.00------------------------------------------------------------1.00---------------------
....................................................................................TCTAATTGTAATGGACGTGTTTATA.............................................................................................................................................251.000.00---------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................CAGATGTTGAAGGATTCTAATG..............2211.001.00-------------------------------------------------1.00--------------------------------
..............................................................................................................................................................................................................GCAGTATGCAGATGTTGAAG........................2011.001.00--------1.00-------------------------------------------------------------------------
............................................................................................................................................................................TCGCACTTTTTTTTCTTTTTTG........................................................221.000.00-----1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAGGATTCTAATGCAAGATATTTTT..2511.001.00----------------------------------------------------------------------------1.00-----
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGGATTC...................2311.001.00--------------------1.00-------------------------------------------------------------
..............................................................................................................................................................................................................GCAGTATGCAGATGTTGAAGGATTCTAATGCAAGAT........3611.001.00-----------------------------------------------------------------1.00----------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTTTT.................241.000.00---1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAGGATTCTAATGCAAGATATTTTTTCATAG311.000.00----1.00-----------------------------------------------------------------------------
.......................................................................................................................................TGATGTTGATTAAGATGTTACGAGCA.........................................................................................2611.001.00--------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................GTTGAAGGATTCTAATGCAAGATTT......251.000.00--------------------------------------------------1.00-------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATTCTAATGCA............2711.001.00-------------------------------------------------------------------------------1.00--
............................................................................................................................................................................TCGCACTTTTTTTTCTTTTCTTTC......................................................241.000.00-1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGGTG...........................191.000.00--------1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGTTGAAGGATTCTAATGCAAG..........2511.001.00------1.00---------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTGGCC...................................................231.000.001.00---------------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTCGG....................................................221.000.00-1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGG.......................1911.001.00---------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTCTAATGCAAGAT........3311.001.00-------------------1.00--------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTGGTG....................................................221.000.001.00---------------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTACT.....................................................211.000.00----1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................................CAGATGTTGAAGGATTCTAATGCAAGATA.......2911.001.00---------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCAAG..........2211.001.00------------------------------------1.00---------------------------------------------
............................................................................................................................................................................................................................TTGAAGGATTCTAATGCAAGACAT......241.000.00-1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................................TATGCAGATGTTGAAGGATT....................2011.001.00---------1.00------------------------------------------------------------------------
............................................................................................................................................................................TCGCACTTTTTTTTCTTTTG..........................................................201.000.001.00---------------------------------------------------------------------------------
..........................................................................................................................................................................ATTCGCACTTTTTTTTCTTTTCTTTTACAG..................................................301.000.001.00---------------------------------------------------------------------------------
..................................................................................................................................................................................................................TATGCAGATGTTGAAGGATA....................201.000.00---------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................ATGTTGAAGGATTCTAATGCA............2111.001.00----------------------1.00-----------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTTATCTG.................................................251.000.00----1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................AATTCGCACTTTTTTTTCTTTTCTTTTATAG..................................................3111.001.001.00---------------------------------------------------------------------------------
..........................................................................................................................................................................ATTCGCACTTTTTTTTCTTTTCTTCT......................................................261.000.00-1.00--------------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCGGCC......................................................201.000.00-1.00--------------------------------------------------------------------------------
......................................................................................................................................TTGATGTTGATTAAGATG..................................................................................................1811.001.00------------------------------------------1.00---------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTCT..................2011.001.00-----------1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................TATGCAGATGTTGAAGGATTCT..................2211.001.00------------------------------------------------------------------1.00---------------
............................................................................................................................................................GAGCAAAAATTCTAATTC............................................................................1811.001.00-----------------------------------------------1.00----------------------------------
.................................................................................................................................................................................CTTTTTTTTCTTTTCTTTTATG...................................................221.000.001.00---------------------------------------------------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATTCTAATGCAAGATATT.....3311.001.00-------------------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................................GCAGATGTTGAAGGATTCTAATGCAAGA.........2811.001.00-------------------------------------------------------1.00--------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCCTG.......................................................201.000.00-------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATTCTAA................2311.001.00------------------------------------------------------------------------------1.00---
.................................................................................................................................................................................CTTTTTTTTCTTTTCGTCT......................................................191.000.00----1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................AGCAGTATGCAGATGTTGAAGGATTC...................2611.001.00-----------------------------------------------------------------------1.00----------
.....................................................................................................................TTAGCATTGAAATTGTCTTGATG..............................................................................................................2311.001.00------------------------------------------------------------------------1.00---------
........................................................................................................................................................................................................TGTGAAGCAGTATGCAGATGTTGAAGGATTC...................3111.001.00-1.00--------------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTACT....................................................221.000.00-------1.00--------------------------------------------------------------------------
........................................................................................................................................................................................................................GATGTTGAAGGATTCTAATGC.............2111.001.00------------------------1.00---------------------------------------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGATT....................1811.001.00----------------------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................ATGTTGAAGGATTCTAATGCAAGACATT.....281.000.00----------------------------------1.00-----------------------------------------------
.................................................................................................................................................................................CTTTTTTTTCTTTTCTTCCAC....................................................211.000.00----1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................CTTTTTTTTCTTTTCTTTTGCAG..................................................231.000.001.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGTTGAAGGA......................2411.001.00-1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTCTA.................2411.001.00------------1.00---------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTAATC...................................................231.000.001.00---------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGTTGAAGGATTCTAATGCA............2311.001.00----------------------------------------------------------------1.00-----------------
.................................................................................................................................................................................CTTTTTTTTCTTTTCTTCTTG....................................................211.000.00-------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGCAAGATATT.....2311.001.00---------------------1.00------------------------------------------------------------
..........................................................................................................................................................................................................TGAAGCAGTATGCAGATGTTGAAGGATTCTA.................3111.001.00---------------------1.00------------------------------------------------------------
.......................................................TTTGTAATTGCTAATGGTTTTTGAACT........................................................................................................................................................................2711.001.00------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................................................................TGTTGAAGGATTCTAATGCAAGA.........2311.001.00--------------------------------------------1.00-------------------------------------
........................................................................................................................................................................................................................GATGTTGAAGGATTCTAATGCA............2211.001.00----------------------1.00-----------------------------------------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCTATTG.....................................................221.000.00-------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCAAG.......................................................201.000.00-----1.00----------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGTTGAAGGATTCTAATGC.............3311.001.00---------------------------------------------1.00------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTTGC....................................................221.000.001.00---------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAGGATTCTAATGCAAG..........1721.001.00----------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTTCTTTTCTTTTATATCAC...............................................2521.000.50----1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGTT............................1811.001.00---------1.00------------------------------------------------------------------------
.............................................................................................................................................................................................................AGCAGTATGCAGATGTTGA..........................1911.001.00---------------------------------------------------1.00------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTT...................221.000.00-----------------------------------------------------------1.00----------------------
............................................................................................................................................................................................................AAGCAGTATGCAGATGTTG...........................1911.001.00--------1.00-------------------------------------------------------------------------
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGGATTCTAATG..............2811.001.00-----------------------1.00----------------------------------------------------------
................................................................................................................................................................................................................AGTATGCAGATGTTGAAGGATCCT..................241.000.00-1.00--------------------------------------------------------------------------------
...................................................................................................................................................................................................................ATGCAGATGTTGAAGGATTCTAATG..............2511.001.00----------1.00-----------------------------------------------------------------------
............................................................................................................................................................................................................................TTGAAGGATTCTAATGCAA...........1911.001.00----------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................TTTTCTTTTCTTTTATAACAA...............................................211.000.00--------------------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................GTATGCAGATGTTGAAGGATTCTAA................2511.001.00-------------------------------1.00--------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTTGTTG..................................................241.000.00-1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................TTCGCACTTTTTTTTCTTTTCTTTTATAGTTC...............................................321.000.00-1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCTAAAG.....................................................221.000.00-----1.00----------------------------------------------------------------------------
................................................................................................................................................................................ACTTTTTTTTCTTTTCTTTTGCTG..................................................241.000.001.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................CAGATGTTGAAGGATTCTAATGCAAGA.........2711.001.00--------------------------------------------------------1.00-------------------------
...............................................................................................................................................................................................................CAGTATGCAGATGTTGAAGG.......................2011.001.00--------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................CACTTTTTTTTCTTTTCTTTG......................................................211.000.00--------------------------------------------------------------------------1.00-------
............................................................................................................................................................................................................................TTGAAGGATTCTAATGCAAGAT........2211.001.00------------------------------------------------1.00---------------------------------
...................................................................................................................................................................AATTCTAATTCGCACTTTTTTTTCTT.............................................................2611.001.00-------------------------------------------------------------1.00--------------------
.............................................................................................................................................................................................................AGCAGTATGCAGATGTTGAAGGAC.....................241.000.00-1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGCA............1650.600.60---------------------0.40-0.20----------------------------------------------------------
................................................................................................................................................................................................TTTTATAGTGTGAAGCAG........................................1820.500.50-----------------------------------------0.50----------------------------------------
..................................................................................................................................................................................TTTTTTTTCTTTTCTTTTATA...................................................2120.500.50----0.50-----------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGTTGAAGGATTCT..................1750.400.40----------------------0.20----------------------------------------------------------0.20
..................................................................................................................................................................................................TTATAGTGTGAAGCAG........................................1630.330.33----------0.33-----------------------------------------------------------------------
................................................................................................................................................................................................................................AGGATTCTAATGCAAG..........1630.330.33--------------------------------------------------------------------------------0.33-
.......................................................................................................................................................................................................................AGATGTTGAAGGATTCTA.................1840.250.25--------0.25-------------------------------------------------------------------------
.....................................................................................................................................................................................................................GCAGATGTTGAAGGAT.....................1650.200.20----0.20-----------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGGATTCTAATGC.............1550.200.20------0.20---------------------------------------------------------------------------

Antisense strand
TACTAATGTCCGATTTACTACTCATCATTTTTCTTGACACTTAACATTGCTTTAATTTGTAATTGCTAATGGTTTTTGAACTCTTCTAATTGTAATGGACGTGTTTATCATTTTAATTTAGCATTGAAATTGTCTTGATGTTGATTAAGATGTTACGAGCAAAAATTCTAATTCGCACTTTTTTTTCTTTTCTTTTATAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAATGCAAGATATTTTTTC
..........................................................................................(((((.(((((((.....((((((((.((((((((((.......)))))))))))))))))).)))).((..............))..............))).)))))...................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
............................................................................................................................................................GAGCAAAAATTCTAATCAC........................................................................... 191.000.00----1.00-----------------------------------------------------------------------------
.............................................................................................................................................................AGCAAAAATTCTAATTTGGG......................................................................... 201.000.00------------------------------1.00---------------------------------------------------
.................CTACTCATCATTTTTAAC....................................................................................................................................................................................................................... 181.000.00----------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................TGCAGATGTTGAAGGAACG................... 191.000.00----------------1.00-----------------------------------------------------------------
..............................AATGTTAAGTGTCAAGAA.......................................................................................................................................................................................................... 1830.330.33--------0.33-------------------------------------------------------------------------