ID: uc011lss.1_intron_4_0_chr9_84235473_r.5p
GENE: TLE1(6)
chr9:84266929-84267178-


(1)
AGO1.ip 		(3)
AGO2.ip 		(7)
BREAST 		(20)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTGAACGTGCCAAACAGGTGACCATGGCAGAATTGAATGCCATCATCGGGGTACGTGGCCTACCAGGTCTACCTCCTACAGTGTGTATAACCAGCTTTCATTTCTTATTAATTTGATGGCTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTAACGTTGACCTATTTGATAAGGGTGGGAGGAGGAGAGGAAGAGACTTGGGATGTGCTAAGGTATATGGAGGAAGAGGGCTTAGCATAA
......................................................................................................................((..((((..((..((....))..))..))))...))...((((....((..(((((((.....))))))).))..))))....................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAGA........................................................................................................24029.002.001.0016.00----3.00--------2.00--1.00-1.00-----1.00-------1.00-1.001.00-1.00-----
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTACT........................................................................................................24013.002.009.00-3.00----1.00-------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAAC........................................................................................................24013.002.002.00-1.006.00------------2.002.00---------------------------
.TGAACGTGCCAAACAGGTGACCATGGC..............................................................................................................................................................................................................................2716.006.00----6.00----------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAAAA.......................................................................................................2504.002.00------1.00----1.00-------1.00------------------1.00------
..........................................................................................................................TACGTGTGTGTGTGTGTGTTAT..........................................................................................................223.000.00---------3.00-----------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGCAAA........................................................................................................2402.001.002.00--------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGT...........................................................................................................2102.002.00--------1.00-1.00----------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTA..........................................................................................................2202.002.00----------1.00-----------------------------1.00----
..........................................................................................................................TACGTGTGTGTGTGTGTGGGCA..........................................................................................................222.000.001.00-1.00------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGCAGA........................................................................................................2402.001.002.00--------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGAT..........................................................................................................2202.001.00--------------1.00--------1.00---------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTACTT.......................................................................................................2502.002.002.00--------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTACGA.......................................................................................................2501.002.001.00--------------------------------------------
.......................................................................................................................CTTTACGTGTGTGTGA...................................................................................................................161.000.00-----------------------------------------1.00---
...............AGGTGACCATGGCAGGGT.........................................................................................................................................................................................................................181.000.00-------------1.00-------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTCAA........................................................................................................2401.002.00-----------1.00---------------------------------
...........................................................................................................................ACGTGTGTGTGTGTGTGTGTGGAC.......................................................................................................241.000.00------------------------------1.00--------------
............................................................................................................................................................................................................................AGGTATATGGAGGAAGAGGGCTC.......231.000.00-----1.00---------------------------------------
............................................................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT...................................................................................................271.000.00---------------------------1.00-----------------
............................................................................................................................................TGTGTGTGTGTGTGTGTATCTTAGACC...................................................................................271.000.00-----1.00---------------------------------------
.TGAACGTGCCAAACAGGTGACCATGGCA.............................................................................................................................................................................................................................2811.001.00-------------------1.00-------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGAAGA........................................................................................................2401.001.00-------------------------------1.00-------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGAAAA........................................................................................................2401.001.00--------------------------------1.00------------
..........................................................................................................................TACGTGTGTGTGTGTGTGGGC...........................................................................................................211.000.00--1.00------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTG..........................................................................................................2201.001.00--------1.00------------------------------------
.....................................................................................................................................................................................AGGGTGGGAGGAGGAGAGGAAGAGACTTGGG......................................3111.001.00-----1.00---------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAGC........................................................................................................2401.002.001.00--------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTG............................................................................................................2001.001.00----------------------------1.00----------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTTA...........................................................................................................211.000.00-----------1.00---------------------------------
.............ACAGGTGACCATGGCAGAGTCG.......................................................................................................................................................................................................................221.000.00-----1.00---------------------------------------
............................................ATCGGGGTACGTGGCCTACC..........................................................................................................................................................................................2011.001.00-------------1.00-------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGCAAT........................................................................................................2401.001.001.00--------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAACT.......................................................................................................2501.002.00-------1.00-------------------------------------
..........................................TCATCGGGGTACGTGGTTTA............................................................................................................................................................................................201.000.00---------------------1.00-----------------------
..........................................................................................................................TACGTGTGTGTGTGTGAAT.............................................................................................................191.000.00------------------1.00--------------------------
...AACGTGCCAAACAGGTGACCATGG...............................................................................................................................................................................................................................2421.001.00-------------1.00-------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGATTT............................................................................................................201.000.00----------------------1.00----------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTTTAG.........................................................................................................231.000.00-----------------------------------1.00---------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAGAA.......................................................................................................2501.002.00-------------------------1.00-------------------
...........................................................................................................................ACGTGTGTGTGTGTGTGTGTGTGTGTGGGG.................................................................................................301.000.00-----1.00---------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGGGA.............................................................................................................191.000.00--------------1.00------------------------------
.............................................................................................................................................................................ATTTGATAAGGGTGGGAGGAGG.......................................................2211.001.00-----------------------------1.00---------------
.........................................................................................................................TTACGTGTGTGTGTGGAC...............................................................................................................181.000.00---------------------------------1.00-----------
.....................................TGCCATCATCGGGGTACGTGGC...............................................................................................................................................................................................2211.001.00------------------------1.00--------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGAAAC........................................................................................................2401.001.00--1.00------------------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGTAT.........................................................................................................2301.002.00----------1.00----------------------------------
..........................................................................................................................TACGTGTGTGTGTGTGTGTGAAC.........................................................................................................2301.001.001.00--------------------------------------------
.................................TGAATGCCATCATCGGG........................................................................................................................................................................................................1730.670.67------------------------------------------0.67--
......................CATGGCAGAATTGAATG...................................................................................................................................................................................................................1730.330.33--------------------------------------------0.33

Antisense strand
TTGAACGTGCCAAACAGGTGACCATGGCAGAATTGAATGCCATCATCGGGGTACGTGGCCTACCAGGTCTACCTCCTACAGTGTGTATAACCAGCTTTCATTTCTTATTAATTTGATGGCTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTAACGTTGACCTATTTGATAAGGGTGGGAGGAGGAGAGGAAGAGACTTGGGATGTGCTAAGGTATATGGAGGAAGAGGGCTTAGCATAA
......................................................................................................................((..((((..((..((....))..))..))))...))...((((....((..(((((((.....))))))).))..))))....................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)
...................................................................................TGTATAACCAGCTTTACTG.................................................................................................................................................... 193.000.00------------3.00--------------------------------
.....................................................................................................................................................................................................................TGTGCTAAGGTATATAAG................... 181.000.00-------1.00-------------------------------------
..........................................................................................................................ACACACACACACACACACGTA........................................................................................................... 2101.001.00--------1.00------------------------------------
......................................................................................................................CACACACACACACACACACACGTAAAGC........................................................................................................ 2830.330.33-------------------------------------------0.33-