ID: uc011lnw.1_intron_14_0_chr9_33347116_f.3p
GENE: (15)
chr9:33347464-33347713+


(1)
AGO1.ip
(1)
AGO2.ip
(11)
CELL-LINE
(6)
HEART
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(23)
SKIN

Sense strand
AAAATACCAAATTTTTTTTTAATAACCTCCTTATTCCTGCAAGAATGGCAATAATCAAAAAATAATAGATGTTGGCGTGGATGTGGTGAAAAGGGAACACTTTTACACTGCTGGTGGGAATGTAAACTAGTACAACCACTGTGGAAAACTGTGGAGATTCCTTAAAGAACTAAAAGTAGATTTACCGTTTGATCCAGCAGTCCCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAA
...........................................................................................................(((((((...((((((((((((......((((.((.....)).))))...(((......))).......))).))))).))))...)))))))..................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................GCTGGTGGGAATGTAAACTCTG.......................................................................................................................2218.000.006.004.00-2.002.00-1.00--------------1.001.00-----------1.00--------------
...........................................................................................................CTGCTGGTGGGAATGTAAACTCTG.......................................................................................................................2414.000.002.001.002.002.001.00-----2.00------1.00--1.00----1.00----------1.00------------
..........................................................................................................................................................................TAAAAGTAGATTTACCGTTTGATCCAG.....................................................2713.003.00-----3.00-------------------------------------------
..................................................................................................................TGGGAATGTAAACTA.........................................................................................................................1502.002.00---------2.00---------------------------------------
.................................................................................................................GTGGGAATGTAAACTCTG.......................................................................................................................182.000.00----------------1.00---------------1.00----------------
................................................................................................................GGTGGGAATGTAAACTCTG.......................................................................................................................192.000.001.00-------1.00----------------------------------------
...............................................................................................................................................................................GTAGATTTACCGTTTGATCCAGCAG..................................................2512.002.00-----------1.00-----------------------------1.00-------
.............................................................................................................GCTGGTGGGAATGTAAACTTTG.......................................................................................................................222.000.001.00-------------------------------------1.00----------
...............................................................................................................................................................................GTAGATTTACCGTTTGATCCAG.....................................................2211.001.00-------------------------------------------1.00-----
..........................................................................................................ACTGCTGGTGGGAATGTAAACTCTG.......................................................................................................................251.000.00---------------------------------------1.00---------
.................................................................................TGTGGTGAAAAGGGAACTCTG....................................................................................................................................................211.000.00------------------------------1.00------------------
.................................................................................................................GTGGGAATGTAAACTACTG......................................................................................................................191.000.00--------1.00----------------------------------------
.......................................................................................................................................................................AACTAAAAGTAGATTTACCGTTTGATCCAGCAG..................................................3311.001.00------------------------1.00------------------------
.............................................................................................................GCTGGTGGGAATGTAAACTAGTACTCTG.................................................................................................................281.000.00-1.00-----------------------------------------------
..............................................................................................................CTGGTGGGAATGTAAACTAGTACAACTCTG..............................................................................................................301.000.00--1.00----------------------------------------------
............................................................................................................TGCTGGTGGGAATGTAAACTCTTG......................................................................................................................241.000.00------1.00------------------------------------------
..............................................................................................................CTGGTGGGAATGTAAACTCTG.......................................................................................................................211.000.00--------------------------------------------1.00----
...........................................................................................AGGGAACACTTTTACACTG............................................................................................................................................1901.001.00-----------1.00-------------------------------------
..............................................................................................................CTGGTGGGAATGTAAACTACTG......................................................................................................................221.000.00---------------------------1.00---------------------
.........................................................................................................CACTGCTGGTGGGAATGTAAACTCTG.......................................................................................................................261.000.00-----------------------------------1.00-------------
................................................................................................................GGTGGGAATGTAAACTAGCTG.....................................................................................................................211.000.00--1.00----------------------------------------------
............................................................................................................................................GTGGAAAACTGTGGAGATTCCTTAAAG...................................................................................2711.001.001.00------------------------------------------------
.................................................................................................................................................AAACTGTGGAGATTCTTAT......................................................................................191.000.00----------------------------1.00--------------------
.............................................................................................................GCTGGTGGGAATGTAAACTCGG.......................................................................................................................221.000.001.00------------------------------------------------
...............................................................................................................TGGTGGGAATGTAAACTCTG.......................................................................................................................201.000.00------------------------------------------1.00------
............................................................................................................TGCTGGTGGGAATGTAAACTCTG.......................................................................................................................231.000.00----1.00--------------------------------------------
................................................................................................................................................................................TAGATTTACCGTTTGATCCAG.....................................................2121.001.00----------------------------------------------0.500.50-
.............................................................................................................GCTGGTGGGAATGTAAACTATG.......................................................................................................................221.000.00------1.00------------------------------------------
.....................................................................................................................................AACCACTGTGGAAAACTGTGGAG..............................................................................................2321.001.00-----------------------1.00-------------------------
............................................................................................GGGAACACTTTTACA...............................................................................................................................................1501.001.00---------------1.00---------------------------------
...........................................................................CGTGGATGTGGTGAAAAGACC..........................................................................................................................................................211.000.00-------1.00-----------------------------------------
........................................................................................................................................CACTGTGGAAAACTGTGGAGATTCCTTAAAG...................................................................................3111.001.00-------------------------------1.00-----------------
......................................................................................................................................................GTGGAGATTCCTTAAAGAACTCTG............................................................................241.000.00---1.00---------------------------------------------
.............................................................................................................................................................................................................................CAGAAGAAAAGAAGTCAAAG.........201.000.00-------1.00-----------------------------------------
..........................................................................................................................................CTGTGGAAAACTGTGGAGAT............................................................................................2020.500.50-------0.50-----------------------------------------
...............................................................................................................................TAGTACAACCACTGTGGAAAACTGT..................................................................................................2530.330.33------------------------------------------------0.33

Antisense strand
AAAATACCAAATTTTTTTTTAATAACCTCCTTATTCCTGCAAGAATGGCAATAATCAAAAAATAATAGATGTTGGCGTGGATGTGGTGAAAAGGGAACACTTTTACACTGCTGGTGGGAATGTAAACTAGTACAACCACTGTGGAAAACTGTGGAGATTCCTTAAAGAACTAAAAGTAGATTTACCGTTTGATCCAGCAGTCCCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAA
...........................................................................................................(((((((...((((((((((((......((((.((.....)).))))...(((......))).......))).))))).))))...)))))))..................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
......................................................................GTTGGCGTGGATGTGTACC................................................................................................................................................................. 192.000.00--------------2.00----------------------------------
..............................................................................................................................................................................................GATCCAGCAGTCCCACTACTTCTG.................................... 242.000.00--1.00----------1.00-----------------------------------
...............................................................................................................................................................................................ATCCAGCAGTCCCACTTCTG....................................... 201.000.00-------------1.00-----------------------------------
...............................................................................................................................................................................................ATCCAGCAGTCCCACTACTGT...................................... 211.000.00------------1.00------------------------------------
...............................................................................................................................................................................................ATCCAGCAGTCCCACTCTG........................................ 191.000.00-------------------1.00-----------------------------
...............................................................................................................................................................................................ATCCAGCAGTCCCACTATCTG...................................... 211.000.001.00------------------------------------------------
.................................................................................................CACTTTTACACTGCTGCG....................................................................................................................................... 181.000.00--------------------------1.00----------------------
...............................................................................................................................................................................................ATCCAGCAGTCCCACTGTG........................................ 191.000.00-----1.00-------------------------------------------
.........................................................................................................ATTCCCACCAGCAGTG................................................................................................................................. 1601.001.00---------------------------------1.00---------------
.........................................................................................................................GTAAACTAGTACAACCTCTG............................................................................................................. 201.000.00----------------1.00--------------------------------
...........GGTTATTAAAAAAAAA............................................................................................................................................................................................................................... 1601.001.00---------------1.00---------------------------------
......................................................................................................................................................................................TACCGTTTGATCCAGCAGTCCCACTGTTC....................................... 291.000.00------------1.00------------------------------------
........................................................AAAAAATAATAGATGTTGGTTTG........................................................................................................................................................................... 231.000.00---------------------------------------------1.00---
.....................................................ATCAAAAAATAATAGATGCTG................................................................................................................................................................................ 211.000.00----------------------------------------1.00--------
...............................................................................................................TGGTGGGAATGTAAACTACTGT..................................................................................................................... 221.000.00-----------------------------1.00-------------------
..........................................................................GCGTGGATGTGGTGAATCA............................................................................................................................................................. 191.000.00------------------1.00------------------------------
.................................................................................................................................................................................................CCAGCAGTCCCACTACCTAC..................................... 201.000.00-------------------------------------1.00-----------