ID: uc011lme.1_intron_9_0_chr9_5811324_r.3p
GENE: (6)
chr9:5811274-5811523-


(2)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
UTERUS

Sense strand
AAATTTAGTAAAAAAAGTGAGGGAGAGCAGTAGGATGGTAGAAAGCGATTTCTGTTCACATTCTTTCTAACCATTTCTTCATTCAAACAGTATATGGTTTATTTCTGCTTTAAATAGTGGTATGTGTAAATCACAAATAGTTTATTCAGCCTTTTTATCTTTTTCCTTTTCTTTCTTTTTTTTTTTGTTTTTACTAATAGGTGACAACATTTTAGCAGTTCTTAAGCATCTAGCTACATCTGATATGCTG
....................................................................................((((.((...((((((((..(((((......))))).....))))))))...)).))))...........................................................................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)
.....................................................................ACCATTTCTTCATTCTG....................................................................................................................................................................1721.000.00---14.00----4.00--1.00-----1.00--1.00------
............................AGTAGGATGGTAGAAAAAA...........................................................................................................................................................................................................196.000.00---------6.00-----------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTGGC..........................................................215.000.005.00--------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTCAG...............................................................234.000.00-1.001.00-2.00----------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTAAAG.............................................................253.000.00-1.001.00-1.00----------------------
.....................................................................ACCATTTCTTCATTCCTG...................................................................................................................................................................183.000.00---2.00----1.00------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTATTG............................................................293.000.00--2.00-1.00----------------------
........................................................................................................................................................................TTCTTTCTTTTTTTTTTTGTTGGC..........................................................242.000.002.00--------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTCTTG.............................................................282.000.00-2.00-------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTGATT...............................................................252.000.002.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTGCTC............................................................242.000.002.00--------------------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTGGCT.........................................................222.000.001.00----1.00---------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTTGGC.............................................................2732.000.672.00--------------------------
................................................................................................................................................................TTTTCCTTTTCTTTCTTTTTTTTCAG................................................................262.000.001.00-1.00------------------------
............................................................................................................................................................ATCTTTTTCCTTTTCTTTCTTTTTGGTC..................................................................282.000.002.00--------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTCAG.................................................................242.000.00--2.00------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTCTG.................................................................241.000.00-1.00-------------------------
.........................................................................................................................................................................TCTTTCTTTTTTTTTTTGTTGTAG.........................................................241.000.00----1.00----------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTGTTGC...........................................................251.000.001.00--------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTCAAG.............................................................271.000.00-1.00-------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTCAAG.............................................................261.000.00-1.00-------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTTCAAG............................................................261.000.00-1.00-------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTGTG.................................................................261.000.001.00--------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTGCG.................................................................261.000.001.00--------------------------
.......................................................................................................................................................................................................................................AGCTACATCTGATATTG..171.000.00---1.00-----------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTCG...............................................................231.000.00-1.00-------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTTTCTTG............................................................311.000.00--1.00------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTATTG...............................................................251.000.00------1.00--------------------
.....................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTGTCTC...........................................................261.000.001.00--------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTGGTT............................................................2921.001.00-----1.00---------------------
.....................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTATTG............................................................251.000.00-1.00-------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTATTG.............................................................271.000.00------1.00--------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTAACG................................................................251.000.00-1.00-------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTACTA............................................................271.000.00----1.00----------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTTTTTTGTTGGC..........................................................251.000.001.00--------------------------
.....................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTCGAA.............................................................241.000.00-1.00-------------------------
.....................................................................ACCATTTCTTCATTCTCTC..................................................................................................................................................................191.000.00-----------1.00---------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTCCTG..............................................................291.000.00--1.00------------------------
.............................................................................................................................................................................TCTTTTTTTTTTTGTTTACAT........................................................211.000.00-1.00-------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTCAC..............................................................251.000.00-1.00-------------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTTTTTTTTAG.............................................................321.000.00-1.00-------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTAT..............................................................271.000.00-------1.00-------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTCTCG............................................................291.000.00-1.00-------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTCTT..............................................................271.000.001.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTGTTTTTTGGC......................................................301.000.001.00--------------------------
................................................................................................................................................................TTTTCCTTTTCTTTCTTTTTTTTTAG................................................................261.000.00-1.00-------------------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTTGCG.........................................................221.000.001.00--------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTAAAC..............................................................241.000.00-------1.00-------------------
.........................................................................................................................................................................TCTTTCTTTTTTTTTTTGTTTTTTTTG......................................................271.000.00----1.00----------------------
.....................................................................................................................................................CCTTTTTATCTTTTTCCTCT.................................................................................201.000.00-------1.00-------------------
............................AGTAGGATGGTAGAATCTG...........................................................................................................................................................................................................191.000.00----------------------1.00----
..........................................................................................................................................................................CTTTCTTTTTTTTTTTGTTCATT.........................................................231.000.001.00--------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTCAAG..............................................................241.000.00--1.00------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTCAG.............................................................281.000.00--1.00------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTAGGC....................................................................191.000.001.00--------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTCTC...............................................................281.000.001.00--------------------------
.........................................................................................................................................................................TCTTTCTTTTTTTTTTTGTTAATC.........................................................241.000.001.00--------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTCAG...............................................................281.000.00----1.00----------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCCAAG.......................................................................221.000.00-1.00-------------------------
.....................................................................ACCATTTCTTCATTCCCTG..................................................................................................................................................................191.000.00-------------1.00-------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTAATC............................................................271.000.001.00--------------------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTCA...........................................................201.000.00-------1.00-------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTTTTTTGTTCCCC.........................................................261.000.001.00--------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTATTG.............................................................281.000.00----1.00----------------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTTAAC.........................................................221.000.00-----1.00---------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTTG...............................................................2351.001.00--0.60-0.20-0.20--------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTTTTTTG................................................................291.000.00-1.00-------------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTTTTTTCG...............................................................301.000.00--1.00------------------------
............................................................................................................................................................................TTCTTTTTTTTTTTGTTTTCTGG.......................................................231.000.00-----1.00---------------------
...........................................................................................................................................................................TTTCTTTTTTTTTTTGTTTTTAACC......................................................251.000.001.00--------------------------
..................GAGGGAGAGCAGTAGGATGGTAGAA...............................................................................................................................................................................................................2511.001.00------------1.00--------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTTAT..............................................................241.000.00------1.00--------------------
..............................................................................................................................................................CTTTTTCCTTTTCTTTCTTTGGTA....................................................................241.000.001.00--------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTTTTTTC............................................................311.000.00-----1.00---------------------
................................................................................................................................................................................................................ATTTTAGCAGTTCTTAAGC.......................1911.001.00---------------------1.00-----
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTGAGG.............................................................261.000.001.00--------------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTTTAAAG............................................................311.000.00----1.00----------------------
................................................................................................................................................................TTTTCCTTTTCTTTCTTTTTTTTTTTG...............................................................2711.001.001.00--------------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTTTTTTGTCATG..........................................................251.000.001.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTGTTGGC..........................................................261.000.001.00--------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTATT................................................................221.000.00------1.00--------------------
.........................................................................................................................................................................TCTTTCTTTTTTTTTTTGTTGGC..........................................................231.000.001.00--------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTGGAT...............................................................251.000.00-----1.00---------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTTTG...................................................................261.000.001.00--------------------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTCTG...................................................................261.000.00-1.00-------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTG...............................................................2621.001.00-0.500.50------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTGGG..............................................................271.000.001.00--------------------------
.............................................................................................................................................................................TCTTTTTTTTTTTGTTTTGTAC.......................................................221.000.00-------1.00-------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTTCAG.............................................................251.000.00--1.00------------------------
..........................................................................................................................................................................CTTTCTTTTTTTTTTTGTGGAC..........................................................221.000.00------1.00--------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTATTG................................................................251.000.00------1.00--------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTATGG............................................................291.000.00--1.00------------------------
................................................................................................................................................................TTTTCCTTTTCTTTCTTTTTTTTTTTAATG............................................................301.000.00--1.00------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTTTTTTTCAAG............................................................291.000.00--1.00------------------------
......................................................................................................................................................................................................................................TAGCTACATCTGATAAC...171.000.00------------------------1.00--
..........................................................................................................................................................................CTTTCTTTTTTTTTTTGTTTTTTTTG......................................................261.000.00-1.00-------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTAAG................................................................221.000.00-1.00-------------------------
.............................................................................................................................................................................TCTTTTTTTTTTTGTTCGAG.........................................................201.000.001.00--------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTCG...............................................................251.000.001.00--------------------------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTAAG..............................................................261.000.00--1.00------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTTATTG..................................................................231.000.00-1.00-------------------------
.................................................................................................................................................................TTTCCTTTTCTTTCTTTTATG....................................................................211.000.00-1.00-------------------------
................................................................................................................................................TTCAGCCTTTTTATCTTTTTCCT...................................................................................2311.001.00-----------------------1.00---
.....................................................................ACCATTTCTTCATTCTCTT..................................................................................................................................................................191.000.00--------1.00------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTTTTGCT...............................................................281.000.001.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTGTTGGT..........................................................261.000.001.00--------------------------
..............................................................................................................................................................CTTTTTCCTTTTCTTTCTTTTTTTAATG................................................................281.000.00----1.00----------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTCGG.................................................................221.000.001.00--------------------------
.........................................................................................................................................................................TCTTTCTTTTTTTTTTTGTGTT...........................................................221.000.00----1.00----------------------
........................................................................................................................................................................TTCTTTCTTTTTTTTTTTGTTTTTTTTG......................................................281.000.00-------1.00-------------------
............................................................................................................................................................................TTCTTTTTTTTTTTGTTGGCC.........................................................211.000.001.00--------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTAATG...................................................................201.000.00-1.00-------------------------
..................................................................CTAACCATTTCTTCACTG......................................................................................................................................................................181.000.00-------------1.00-------------
.............................................................................................................................................................TCTTTTTCCTTTTCTTTCTTTTTTTTTG.................................................................281.000.00------1.00--------------------
...............................................................................................................................................................TTTTTCCTTTTCTTTCTTTTTTCTG..................................................................251.000.00--1.00------------------------
.......................AGAGCAGTAGGATGGTCT.................................................................................................................................................................................................................181.000.00----------------1.00----------
..................................................................................................................................................................TTCCTTTTCTTTCTTTTTTTTTTTG...............................................................2530.670.67-0.67-------------------------
...........................CAGTAGGATGGTAGAAA..............................................................................................................................................................................................................1720.500.50-------------------------0.50-
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTGGA.............................................................2640.500.250.50--------------------------
....................................................................................................................................................................CCTTTTCTTTCTTTTTTTTTTTGGC.............................................................2550.401.00-----0.40---------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTGGG.............................................................2640.250.250.25--------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTGCC.............................................................2640.250.250.25--------------------------
...................................................................................................................................................................TCCTTTTCTTTCTTTTTTTTTTTG...............................................................2440.250.25----0.25----------------------

Antisense strand
AAATTTAGTAAAAAAAGTGAGGGAGAGCAGTAGGATGGTAGAAAGCGATTTCTGTTCACATTCTTTCTAACCATTTCTTCATTCAAACAGTATATGGTTTATTTCTGCTTTAAATAGTGGTATGTGTAAATCACAAATAGTTTATTCAGCCTTTTTATCTTTTTCCTTTTCTTTCTTTTTTTTTTTGTTTTTACTAATAGGTGACAACATTTTAGCAGTTCTTAAGCATCTAGCTACATCTGATATGCTG
....................................................................................((((.((...((((((((..(((((......))))).....))))))))...)).))))...........................................................................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)
......AGTAAAAAAAGTGAGGTTCT................................................................................................................................................................................................................................ 206.000.00----------6.00----------------
.............................................................................................................TTAAATAGTGGTATGTGCATT........................................................................................................................ 214.000.00-1.003.00------------------------
..........................................................................................................................................................................CTTTCTTTTTTTTTTTGTTC............................................................ 201.000.00------------------1.00--------
.......................................................................................................................................................TTTTTATCTTTTTCCTTTAGTA............................................................................. 221.000.00------------1.00--------------
.AATTTAGTAAAAAAACAGG...................................................................................................................................................................................................................................... 191.000.00-----1.00---------------------
.............................GTAGGATGGTAGAAACATC.......................................................................................................................................................................................................... 191.000.00-------------------1.00-------
...................................................................................................................................................................................................................TTAGCAGTTCTTAAGCTC..................... 181.000.00--------------1.00------------
......AGTAAAAAAAGTGAGCT................................................................................................................................................................................................................................... 171.000.00-1.00-------------------------
......AGTAAAAAAAGTGAGGTCCT................................................................................................................................................................................................................................ 201.000.00-----------1.00---------------
...............................AGGATGGTAGAAAGCCCGA........................................................................................................................................................................................................ 191.000.00---------------1.00-----------
......AGTAAAAAAAGTGAGGTTTG................................................................................................................................................................................................................................ 201.000.00--1.00------------------------
.AATTTAGTAAAAAAAGAG....................................................................................................................................................................................................................................... 181.000.00----1.00----------------------
........TAAAAAAAGTGAGGGTTG................................................................................................................................................................................................................................ 181.000.00--1.00------------------------
.............................GTAGGATGGTAGAAAAATC.......................................................................................................................................................................................................... 191.000.00-------1.00-------------------
...............................................................................................................................................................................AGTAAAAACAAAAAAAAAAA....................................................... 2070.140.14--------------------------0.14