ID: uc011lmb.1_intron_4_0_chr9_5463122_f.3p
GENE: (5)
chr9:5465299-5465548+


(1)
BRAIN
(6)
CELL-LINE
(2)
LIVER
(1)
OTHER
(2)
SKIN
(1)
XRN.ip

Sense strand
TCAAAGCCTGGGCTTCTCACACTTCTCCATGCTGTTCCCATTTTAACACAGGTATCTCGCCATTCCAGCCACTCAAACTTTGGCATTTAAGAAAATTATCCTAAAGCTAAACTAAACTTCAAGGATGACCATTCTCCTGACCCCTTCCCATCAAAATTTTATCTTTAGTCAGTTTGTTTTCGTTTTGTTTTGTTTTTCAGAACTACCTCTGGCACATCCTCCAAATGAAAGGACTCACTTGGTAATTCTG
........................................................................................................................................(((((..........................)))))..............................................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTGAGG.................................................247.000.005.002.00-----------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTTTGAGG.................................................225.000.004.001.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTCCTG.................................................293.000.00-2.00-1.00---------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTAGAG..................................................233.000.002.001.00-----------
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTTGAGG.................................................232.000.002.00------------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTCTG...................................................262.000.002.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTCAGAG................................................262.000.00-2.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTCCCG.................................................292.000.00-2.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTCC...................................................272.000.001.001.00-----------
...............................................................................................................................................................................GTTTTCGTTTTGTTTTGTTTTAAG...................................................242.000.00-2.00-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGGTT.......................................................222.000.00-2.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTCGAG....................................................222.000.00-2.00-----------
...........................................................................................................................................................................GTTTGTTTTCGTTTTGTTTTGTTTCTCC...................................................282.000.00-2.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTGTC....................................................222.000.00-2.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCCCT.................................................242.000.002.00------------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTTCC...................................................262.000.00-2.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTGGAG.................................................242.000.002.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTTTTG.................................................252.000.002.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTTAGT.................................................242.000.002.00------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTCCT..................................................282.000.00-2.00-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTCGTT...................................................262.000.002.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTACC...................................................222.000.002.00------------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTGGGA...................................................261.000.001.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCGGTC................................................251.000.00-1.00-----------
..............................................................................................................................................................................TGTTTTCGTTTTGTTTTGTTTGGT....................................................241.000.001.00------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTGC....................................................261.000.00-1.00-----------
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTAACA..................................................221.000.00-1.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTGAG.........................................................211.000.00-1.00-----------
...........................................................................................................................................ACCCCTTCCCATCAAAATTTTATCTCTAG..................................................................................291.000.00---------1.00---
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTGCCC..................................................281.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTTTCC.................................................251.000.00-1.00-----------
...............................................................................................................................................................................GTTTTCGTTTTGTTTTGTTTTTTTG..................................................251.000.001.00------------
..................................TTCCCATTTTAACACACTCT....................................................................................................................................................................................................201.000.00---1.00---------
..............................................................................................................................................................................TGTTTTCGTTTTGTTTTGTTTGGG....................................................241.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTTCC..................................................241.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTCCCGG................................................261.000.00-1.00-----------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTTTGGCA.................................................221.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTCTC....................................................221.000.001.00------------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTCTGC...................................................261.000.00-1.00-----------
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTTCGAG.................................................231.000.001.00------------
......................................................................................................................................................................................................AGAACTACCTCTGGCACATCCTCC............................2411.001.00--------1.00----
..........................................................................................................................................................................AGTTTGTTTTCGTTTTGTTTTGTTTTGCC...................................................291.000.00-1.00-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGACT.......................................................221.000.001.00------------
..............................................................................................................................................................................TGTTTTCGTTTTGTTTTGTTTTTCC...................................................251.000.00-1.00-----------
.............................................................................................................................................................................................................CCTCTGGCACATCCTCCAAATG.......................2211.001.00-------1.00-----
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTATGG..................................................221.000.00-1.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTGGTC.................................................241.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTCTTC...................................................231.000.00-1.00-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTATG....................................................251.000.001.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCTCT.................................................241.000.001.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTTGGC.................................................241.000.001.00------------
..............................................................................................................................................................................TGTTTTCGTTTTGTTTTGTTTTTTA...................................................251.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTCTTT...................................................231.000.00-1.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCCGAG................................................251.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTCGAGA................................................261.000.001.00------------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTTTGCAG.................................................221.000.001.00------------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTTTCAGTC................................................231.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTTTGT.................................................251.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTCAGC.................................................251.000.001.00------------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTCTG....................................................251.000.001.00------------
..........................................................................................................................................................................AGTTTGTTTTCGTTTTTGGG............................................................201.000.00-1.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTGCTG..................................................281.000.00-1.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCTCC.................................................241.000.001.00------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTATG..................................................281.000.001.00------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGGAG.......................................................231.000.001.00------------
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTCTCC..................................................221.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTGC...................................................231.000.00-1.00-----------
..........................................................................................................................................................AATTTTATCTTTAGTGACT.............................................................................191.000.00-----1.00-------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTTCCTG.................................................281.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTTTGG.................................................251.000.00-1.00-----------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTGGTT...................................................231.000.001.00------------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTTTGCC..................................................211.000.00-1.00-----------
...........................................................................................................................................................................................TTTTGTTTTTCAGAACTCCGA..........................................211.000.00------1.00------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTTCCTTT................................................251.000.001.00------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTCTTG.....................................................251.000.001.00------------
...................................................................................................................................................................................TCGTTTTGTTTTGTTTGACC...................................................201.000.00-1.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTTTCG...................................................271.000.00-1.00-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTCC....................................................251.000.00-1.00-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGGG........................................................221.000.00-1.00-----------
..................................................................................................................................................................................TTCGTTTTGTTTTGTTTTTGGG..................................................221.000.001.00------------
................................................................................................................................................................................TTTTCGTTTTGTTTTGTTTTTGTAC.................................................251.000.001.00------------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTTCCT...................................................221.000.00-1.00-----------
.................................................................................................................................................................................TTTCGTTTTGTTTTGTTTGGG....................................................211.000.001.00------------
...................................................................................................................................TTCTCCTGACCCCTTCCC.....................................................................................................1830.330.33-----------0.33-
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTTAAAG.................................................2830.330.33---0.33---------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTT.....................................................2430.330.33-0.33-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTTTAGC.................................................2830.330.33-0.33-----------
.............................................................................................................................................................................TTGTTTTCGTTTTGTTTTGTTTTTGTT..................................................2730.330.330.33------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTCTCC...................................................2790.220.110.22------------
....................................................................................................................................TCTCCTGACCCCTTCC......................................................................................................1660.170.17------------0.17
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTT.......................................................2390.110.110.11------------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTGGC....................................................2690.110.11-0.11-----------
............................................................................................................................................................................TTTGTTTTCGTTTTGTTTTGTTTCT.....................................................2590.110.11-0.11-----------

Antisense strand
TCAAAGCCTGGGCTTCTCACACTTCTCCATGCTGTTCCCATTTTAACACAGGTATCTCGCCATTCCAGCCACTCAAACTTTGGCATTTAAGAAAATTATCCTAAAGCTAAACTAAACTTCAAGGATGACCATTCTCCTGACCCCTTCCCATCAAAATTTTATCTTTAGTCAGTTTGTTTTCGTTTTGTTTTGTTTTTCAGAACTACCTCTGGCACATCCTCCAAATGAAAGGACTCACTTGGTAATTCTG
........................................................................................................................................(((((..........................)))))..............................................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................CCATCAAAATTTTATAAA..................................................................................... 184.000.00--4.00----------
...........................................................................................................................................TTTTGATGGGAAGGGGT.............................................................................................. 1732.002.00----2.00--------
.........................................................................................................................................................AAATTTTATCTTTAGTGCGT............................................................................. 201.000.00----------1.00--