ID: uc011lav.1_intron_6_0_chr8_28645407_r.5p
GENE: (10)
chr8:28651124-28651373-


(2)
BREAST
(6)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(2)
OTHER
(9)
SKIN

Sense strand
TCCCCTGTGGCCAACAGTTCACTGGAGTTTTCCCAGATCTTTGCTGAGTGGTATGTCCGTGGTTTTTTTTTTTTTTTGTGAATTTTATTTGATTCAGGACATTCAAGCAGTAAGAATAAAAATAATCCTGTTTTTTCTCACATTACTGTGGAAATTTCATTTTGTTGTTTTTCTGTCTGTGATAAGATTGCATTATTAAAAGCCAAATCTGTTGCATTGCTAAGTTTAGAATAATAGTTGTCAAAGAGGG
....................................................((((((....................((((((......))))))))))))....((((..((((....(((((...((...((((.((((....))))))))...))..)))))....))))..))))......................................................................
..................................................51................................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
..............................................................................................................................................................ATTTTGTTGTTTTTCGGAA.........................................................................1957.000.0015.0014.007.006.005.00--4.00--2.001.00-----1.001.00--1.00
..............................................................................................................................................................ATTTTGTTGTTTTTCTGTA.........................................................................191.000.00--------------------1.00-
........................................................CCGTGGTTTTTTTTTTTG................................................................................................................................................................................181.000.00------------1.00---------
...........................................................TGGTTTTTTTTTTTTTTTGTTCCC.......................................................................................................................................................................241.000.00------1.00---------------
...........................................................TGGTTTTTTTTTTTTTTTGTTTTC.......................................................................................................................................................................241.000.00-----1.00----------------
...........................................................TGGTTTTTTTTTTTTTTTGTGTTTG......................................................................................................................................................................251.000.00------1.00---------------
............................................................GGTTTTTTTTTTTTTTTGTCTTC.......................................................................................................................................................................231.000.00------1.00---------------
.................................CAGATCTTTGCTGAGTGGT......................................................................................................................................................................................................1911.001.00----------------1.00-----
.................TTCACTGGAGTTTTCAA........................................................................................................................................................................................................................171.000.00--------1.00-------------
.........................................................CGTGGTTTTTTTTTTTTTTTAGC..........................................................................................................................................................................231.000.00------1.00---------------
...........................................................TGGTTTTTTTTTTTTTTTGTGTACT......................................................................................................................................................................251.000.00------1.00---------------
.....................CTGGAGTTTTCCCAGGAAT..................................................................................................................................................................................................................191.000.00-------------1.00--------
...........................................................TGGTTTTTTTTTTTTTTTGTTGTT.......................................................................................................................................................................241.000.00-----1.00----------------
.................TTCACTGGAGTTTTCAGT.......................................................................................................................................................................................................................181.000.00--------1.00-------------
...........................................................................................................................................................TTCATTTTGTTGTTTTTCGGAA.........................................................................221.000.00--1.00-------------------
....................................................ATGTCCGTGGTTTTTTTTTTTTTCG.............................................................................................................................................................................251.000.00-----1.00----------------
.....................................................TGTCCGTGGTTTTTTTTTTTTCCG.............................................................................................................................................................................241.000.00-----1.00----------------
.....................................................................................TATTTGATTCAGGACATTCAAGC..............................................................................................................................................2311.001.00---------------1.00------
..........................................................................................................................................................TTTCATTTTGTTGTTTTTCTGTCCC.......................................................................251.000.00-----1.00----------------
..........................................................................................................................................CACATTACTGTGGAAACTGA............................................................................................201.000.00-----------1.00----------

Antisense strand
TCCCCTGTGGCCAACAGTTCACTGGAGTTTTCCCAGATCTTTGCTGAGTGGTATGTCCGTGGTTTTTTTTTTTTTTTGTGAATTTTATTTGATTCAGGACATTCAAGCAGTAAGAATAAAAATAATCCTGTTTTTTCTCACATTACTGTGGAAATTTCATTTTGTTGTTTTTCTGTCTGTGATAAGATTGCATTATTAAAAGCCAAATCTGTTGCATTGCTAAGTTTAGAATAATAGTTGTCAAAGAGGG
....................................................((((((....................((((((......))))))))))))....((((..((((....(((((...((...((((.((((....))))))))...))..)))))....))))..))))......................................................................
..................................................51................................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
...................................................................................................................................................................................................TTAAAAGCCAAATCTGGC..................................... 182.000.00---------2.00------------
......................................................................................................................................TTCTCACATTACTGTGCTGA................................................................................................ 201.000.00-------------------1.00--
...........................................................TGGTTTTTTTTTTTTTTTGTAAAG....................................................................................................................................................................... 241.000.00--------------1.00-------
.............................................................................................................GTAAGAATAAAAATAAAACG......................................................................................................................... 201.000.00--------1.00-------------