ID: uc011kkn.1_intron_0_0_chr7_101459374_f.5p
GENE: (1)
chr7:101459324-101459573+


(3)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(12)
BREAST 		(16)
CELL-LINE 		(16)
CERVIX 		(5)
HEART 		(1)
HELA 		(6)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(33)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGGTCAGGCTCCTCCGCGCTCGGCCTCGCGCCCGGGGGTGGGGGCTGCGGGCGGTCGCGGCCTCCGCCGGGGGCCCCGGGCTGGCCCAGCCGCCGGGGGGCCCGCGGCGGCGGGGAGGAGGGGGGTGCCGGGCACCGCGGGGCCGAGTCGGGGCCGAGTCCCTCCCGCTCCCCGGCCCCCATTGATCACTCGCTTGATCGGA
............................................................................................................((.(((((((((.((((.(((.(((...)))))).)))).))).)))))).)).........................................................................................
..........................................................................................................107......................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM956925PAZD5SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040041(GSM532926)
G612T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040019(GSM532904)
G701T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)
..............................................................................................................................................GGGGGGCCCGCGGCGGCG..........................................................................................1819.009.00-2.00-----4.00--2.00------1.00------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGC..............................................................................................1515.005.00------1.00-----------------------------------------------1.00-1.00-------1.00-----------1.00-------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCG..........................................................................................1725.005.00-0.503.00------------------------------0.500.50--0.50----------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGGC........................................................................................2014.001.00----1.00-----1.00-2.00-----------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGGC........................................................................................193.000.00-1.001.00----1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGC...........................................................................................1813.003.00-------------------1.00-------1.00------------------------1.00-------------------------------------------------
.....................................ACAGCAGCTGCAGGTCAG...................................................................................................................................................................................................1812.002.00-----------2.00------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGC.........................................................................................1912.009.00-2.00----------------------------------------------------------------------------------------------------
...........TTTCAATATTGGAAGCGCTTTGATT......................................................................................................................................................................................................................2512.002.00-----------2.00------------------------------------------------------------------------------------------
...............................................................................................................CCGCCGGGGGCCCCGGCGG........................................................................................................................192.000.00-----2.00------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCC..........................................................................................1812.001.00-1.00---------------------------------------------1.00------------------------------------------------------
............................................CTGCAGGTCAGGCTCCTCCG..........................................................................................................................................................................................2012.002.00-------------------------2.00----------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGGCGAC.....................................................................................222.000.00--------1.00----1.00----------------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGA......................................................................................1632.002.002.00-----------------------------------------------------------------------------------------------------
..........GTTTCAATATTGGAAGCGCTTTG.........................................................................................................................................................................................................................2312.002.00--------------2.00---------------------------------------------------------------------------------------
................ATATTGGAAGCGCTTTGATTTACAGCA...............................................................................................................................................................................................................2712.002.00----------------------2.00-------------------------------------------------------------------------------
.........................................................................................................................................CCGCCGGGGGGCCCGGG................................................................................................172.000.00-----------------------------1.00-----------------------------------------------------1.00------------------
............TTCAATATTGGAAGCGCTTT..........................................................................................................................................................................................................................2012.002.00---------2.00--------------------------------------------------------------------------------------------
...................................................................................................................................................GCCCGCGGCGGCGGGGCG.....................................................................................182.000.002.00-----------------------------------------------------------------------------------------------------
..........GTTTCAATATTGGAAGCG..............................................................................................................................................................................................................................1821.501.50---------------------------------1.00-------------------------------------------------------0.50------------
..............................................................................................................................................GGGGGGCCCGCGGCGCCG..........................................................................................181.000.00------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCGGCG.......................................................................................221.000.00-----------------------1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................CGAGTCGGGGCCGAGGGC.........................................181.000.00----------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................GGAGGAGGGGGGTGCCGTT......................................................................191.000.00-------------------------------------------------------------1.00----------------------------------------
.............................TTTGATTTACAGCAGCTGCAGGT......................................................................................................................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGAGCG...................................................................................191.000.00----------------------------------1.00-------------------------------------------------------------------
..................ATTGGAAGCGCTTTGATTTACAGCA...............................................................................................................................................................................................................2511.001.00---------------------------------------------------1.00--------------------------------------------------
...............................................................................................................................................................................................................CCCTCCCGCTCCCCGGCCCCCATT...................2411.001.00-------------1.00----------------------------------------------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGCGGCT..........................................................................................2011.001.00----------------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................CCGCTCCCCGGCCCCCCG....................181.000.00----------------------------1.00-------------------------------------------------------------------------
...............................................CAGGTCAGGCTCCTCCGCGCTC.....................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------1.00----------------------
..................................................................................................................................................................................................................TCCCGCTCCCCGGCCCCT......................181.000.00-------------------------------------------------------------------------------------1.00----------------
............................................................................................................................................CCGGGGGGCCCGCGGC..............................................................................................1611.001.00------1.00-----------------------------------------------------------------------------------------------
........................................................................................................GCGGCCTCCGCCGGGCG.................................................................................................................................171.000.00--1.00---------------------------------------------------------------------------------------------------
.........................................................................................................................................CCGCCGGGGGGCCCGG.................................................................................................161.000.00-------------1.00----------------------------------------------------------------------------------------
...........TTTCAATATTGGAAGCGCTTTGA........................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGA.........................................................................................1821.005.00-1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCCCG........................................................................................2011.001.00-1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................CCGCCGGGGGGCCCGGGG...............................................................................................181.000.00-----------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGTCC.........................................................................................191.000.00--1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGCC........................................................................................2011.009.00----1.00-------------------------------------------------------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGCGGC...........................................................................................1911.001.00-----------------------------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................CGCGGGGCCGAGTCGGCGG................................................191.000.001.00-----------------------------------------------------------------------------------------------------
................................................................................................................................................GGGGCCCGCGGCGGCCCGC.......................................................................................191.000.00-------------------------------------------------------------------------1.00----------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGGCC.......................................................................................201.000.00-1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................................CGGCGGCGGGGAGGAGCTT...............................................................................191.000.00-------------------------------------------------------------------1.00----------------------------------
...............................................................................................................CCGCCGGGGGCCCCGTCCG........................................................................................................................191.000.001.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGTTG.........................................................................................191.000.00-1.00----------------------------------------------------------------------------------------------------
....................TGGAAGCGCTTTGATTTAC...................................................................................................................................................................................................................1911.001.00--------------------------------------1.00---------------------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGCGGCGGCG.......................................................................................231.000.00--------------------------------------------------------------------1.00---------------------------------
......................................................................................................................................................CGCGGCGGCGGGGAGGAGGGGTA.............................................................................231.000.00----------------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGGCGT......................................................................................2211.001.001.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................GCCGCCGGGGGGCCCGGGC...............................................................................................191.000.00---------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCGGCGGC.....................................................................................241.000.00--------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCGGGGA......................................................................................2311.001.00--------1.00---------------------------------------------------------------------------------------------
.........................................................................................................CGGCCTCCGCCGGGGGGGG..............................................................................................................................191.000.00-----1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCGGGGGCT....................................................................................251.000.00--------------------------------------------------1.00---------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGCG.............................................................................................1711.001.00--------------------------------------------------------------1.00---------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGG.........................................................................................1911.001.00------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCG..........................................................................................1911.001.00-----------------------------------------------------------------1.00------------------------------------
...........................................................................................................................................GCCGGGGGGCCCGCGGGAG............................................................................................191.000.001.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGAGCGG..................................................................................201.000.00------------------------------------------------------------------------------1.00-----------------------
.................TATTGGAAGCGCTTTGAT.......................................................................................................................................................................................................................1811.001.00------------------------------1.00-----------------------------------------------------------------------
............................CTTTGATTTACAGCAGCTGCAGAGAG....................................................................................................................................................................................................261.000.00------------------------------------------------------------------------1.00-----------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGGGCACG....................................................................................241.000.00--------1.00---------------------------------------------------------------------------------------------
.....................................................................................GTGGGGGCTGCGGGCTGC...................................................................................................................................................181.000.00-------------------------------------------------1.00----------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGGG........................................................................................1911.001.00---------------------------------------------------------------------------1.00--------------------------
.........................................................................................................................................CCGCCGGGGGGCCCGGGCA..............................................................................................191.000.00------------------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................................................CCCGCTCCCCGGCCCCCC.....................181.000.00--------------------------1.00---------------------------------------------------------------------------
.................................................................................................................GCCGGGGGCCCCGGGGC........................................................................................................................171.000.001.00-----------------------------------------------------------------------------------------------------
...................................TTACAGCAGCTGCAGGGAT....................................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGCGGCGGC........................................................................................221.000.00-------------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGGCG.......................................................................................201.000.00-1.00----------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGAGGGGGGTGCCGGGGGT...................................................................191.000.00---------------------------------------------------------------------------------1.00--------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGC...........................................................................................1711.001.00--1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................GCGGGGAGGAGGGGGGTGG..........................................................................191.000.00-----------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCCCGCGGCGGCGGCGAA.....................................................................................241.000.00---------1.00--------------------------------------------------------------------------------------------
...................................TTACAGCAGCTGCAGAGAG....................................................................................................................................................................................................191.000.00---------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGGCGAC.....................................................................................2311.001.00---------------------------------------------1.00--------------------------------------------------------
...............AATATTGGAAGCGCTTTG.........................................................................................................................................................................................................................1811.001.00---------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGGCGC........................................................................................201.000.00--------------------------1.00---------------------------------------------------------------------------
............TTCAATATTGGAAGCGCTTTGA........................................................................................................................................................................................................................2211.001.00--------------------------------1.00---------------------------------------------------------------------
..............................................................................................................................................................CGGGGAGGAGGGGGGGGC..........................................................................181.000.00-------------------------------------------1.00----------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCGCGC.......................................................................................2021.005.00-1.00----------------------------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGGG.....................................................................................171.000.00-----1.00------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGGGC.........................................................................................191.000.00-1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGCTG..........................................................................................181.000.00----------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CGAGTCGGGGCCGAGGG..........................................171.000.00------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................................................CCCGCTCCCCGGCCC........................1501.001.00--------------------------------------------------------------------------------1.00---------------------
..............................................................................................................................................GGGGGGCCCGCGGCGCC...........................................................................................171.000.00--1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................GGGCCCGCGGCGGCGCCGA......................................................................................191.000.00--1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGGCGGGGAC.....................................................................................231.000.00----------------------------------------------------------------------------------1.00-------------------
................ATATTGGAAGCGCTTTGATT......................................................................................................................................................................................................................2011.001.00-------------------------------1.00----------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGG..........................................................................................1740.750.25-0.250.25----------------------------------0.25----------------------------------------------------------------
................................................................................................................................................GGGGCCCGCGGCGGCG..........................................................................................1640.500.500.50-----------------------------------------------------------------------------------------------------
.......................................................................................GGGGGCTGCGGGCGGTCG.................................................................................................................................................1820.500.50--------0.50---------------------------------------------------------------------------------------------
................ATATTGGAAGCGCTTTGA........................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------------------------------0.50-------------
...............................................................................................................................................GGGGGCCCGCGGCGGCCCGT.......................................................................................2030.330.33--0.33---------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CTCCCGCTCCCCGGCC.........................1630.330.33---------------------------------------------------------------------------------------0.33--------------
...............................................................................................................................................GGGGGCCCGCGGCGGCCCG........................................................................................1930.330.33--0.33---------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCC..........................................................................................1730.330.33-0.33----------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGCCGC........................................................................................1930.330.33--0.33---------------------------------------------------------------------------------------------------
................................................................................................................CGCCGGGGGCCCCGGCG.........................................................................................................................1760.330.17--------------------0.17-----------------------------------------------------------------------0.17---------
...............................................................................................................................................GGGGGCCCGCGGCGGC...........................................................................................1630.330.33-----------------------------------0.33------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGG............................................................................................1540.250.250.25-----------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGGGC........................................................................................1940.250.25-------------------------------------0.25----------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGTC..........................................................................................1740.250.25-------------------------------------0.25----------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGCGG........................................................................................1940.250.25-0.25----------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGC..........................................................................................1740.250.25--0.25---------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGGCG........................................................................................1940.250.25--0.25---------------------------------------------------------------------------------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGTG..........................................................................................1740.250.25-0.25----------------------------------------------------------------------------------------------------
........................................................................................................................................................CGGCGGCGGGGAGGAGG.................................................................................1750.200.20------------------------------------------------------------------------------------------0.20-----------
................................................................................................................CGCCGGGGGCCCCGGG..........................................................................................................................1660.170.17---------------------------------------------------------------------------------------------0.17--------
................................................................................................................CGCCGGGGGCCCCGG...........................................................................................................................1560.170.17---------------------------------------------------------------------------------------0.17--------------
................................GATTTACAGCAGCTG...........................................................................................................................................................................................................1580.120.12--------------------------------------0.12---------------------------------------------------------------
.................................................................................................................................................................................................................CTCCCGCTCCCCGGC..........................1590.110.11---------------------------------------------------------------------------------------------------0.11--
...........................................................................................................................................................CGGCGGGGAGGAGGGGG..............................................................................1790.110.11---------------------------------------0.11--------------------------------------------------------------
..........................................................................................................................................................GCGGCGGGGAGGAGGGG...............................................................................1790.110.11----------------------------------------------------------------------------------------------------0.11-

Antisense strand
TGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGGTCAGGCTCCTCCGCGCTCGGCCTCGCGCCCGGGGGTGGGGGCTGCGGGCGGTCGCGGCCTCCGCCGGGGGCCCCGGGCTGGCCCAGCCGCCGGGGGGCCCGCGGCGGCGGGGAGGAGGGGGGTGCCGGGCACCGCGGGGCCGAGTCGGGGCCGAGTCCCTCCCGCTCCCCGGCCCCCATTGATCACTCGCTTGATCGGA
............................................................................................................((.(((((((((.((((.(((.(((...)))))).)))).))).)))))).)).........................................................................................
..........................................................................................................107......................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM956925PAZD5SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040041(GSM532926)
G612T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040019(GSM532904)
G701T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)
...........................GCAGCTGCTGTAAATCAAAGC.......................................................................................................................................................................................................... 2115.005.00---5.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................CGGCGGGGAGGAGGGGGGC............................................................................ 193.000.00--------------------1.00---1.00-----------1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................CCGCTCCCCGGCCCCTCG.................... 183.000.00------------------------------------------1.00-------------------------------1.00---------1.00-----------------
........................................................................................................................................................CGGCGGCGGGGAGGAGG................................................................................. 172.000.00------2.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CCGCTCCCCGGCCCCTCGG................... 192.000.00---------1.00------------------------------------1.00-------------------------------------------------------
..............................................................................................................................................................CGGGGAGGAGGGGGGGCG.......................................................................... 182.000.00-----1.00-------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................GAGGGGGGTGCCGGGCGCGG................................................................. 202.000.00---------------2.00--------------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGGA..................................................................................... 172.000.00----2.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CCGCTCCCCGGCCCCTC..................... 171.000.00---------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................GCGGGGAGGAGGGGGGGA........................................................................... 181.000.00------------------------1.00-----------------------------------------------------------------------------
..........................................................................................GGCTGCGGGCGGTCGCGGG............................................................................................................................................. 191.000.00-----------------------------------------------------------------------1.00------------------------------
............................................................................................................................................CCGCCGCGGGCCCCCCGG............................................................................................ 1811.001.00--------------------1.00---------------------------------------------------------------------------------
....................................................................................................................................................CCCGCGGCGGCGGGGGGG.................................................................................... 181.000.001.00-----------------------------------------------------------------------------------------------------
..........................................................................................................GGCCTCCGCCGGGGGC................................................................................................................................ 161.000.00------------------------------------------------------------------1.00-----------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGCA........................................................................................... 171.000.001.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................................GCGGCGGCGGGGAGGAGGGCC.............................................................................. 211.000.00-----------------1.00------------------------------------------------------------------------------------
..............................................AGCGCGGAGGAGCCTGACCTGC...................................................................................................................................................................................... 2211.001.00------------------------------1.00-----------------------------------------------------------------------
........................................................................................................................................................CGGCGGCGGGGAGGAGGGGCGG............................................................................ 221.000.00------------------1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................................GAGGGGGGTGCCGGGCGC................................................................... 181.000.00--------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................GAGGGGGGTGCCGGGCGCG.................................................................. 191.000.00--------------------------------------------1.00---------------------------------------------------------
...............................................................................................................CCGCCGGGGGCCCCGGGCGG....................................................................................................................... 201.000.001.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CCGCTCCCCGGCCCCTA..................... 171.000.00-------------------------------------------------------1.00----------------------------------------------
..................................................................................................................................................................................................................................ATCAAGCGAGTGATCAATGG.... 2011.001.00-----------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................GGGGGCCCGCGGCGGGGCG........................................................................................ 1941.000.001.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................GCGGGGAGGAGGGGGGTGGC......................................................................... 201.000.00-----------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CCCTCCCGCTCCCCGCGG......................... 181.000.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................AGCGGGAGGGACTCGGCCCCGA................................. 2211.001.00----------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................CGGCGGGGAGGAGGGGGG............................................................................. 181.000.00------------------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................CGGCGGCGGGGAGGAGA................................................................................. 171.000.00------1.00-----------------------------------------------------------------------------------------------
....................................................................................................GGTCGCGGCCTCCGCCGCTC.................................................................................................................................. 201.000.00----------------------------------------------------------------------1.00-------------------------------
...............................................AGCGCGGAGGAGCCTGACCTG...................................................................................................................................................................................... 2111.001.00---1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGCC........................................................................................... 171.000.001.00-----------------------------------------------------------------------------------------------------
...............................................................................................................CCGCCGGGGGCCCCGGGC......................................................................................................................... 181.000.00----1.00-------------------------------------------------------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGG.............................................................................................. 161.000.00-----------------------------------1.00------------------------------------------------------------------
...................................................................................................................................CCCCCCGGCGGCTGGGC...................................................................................................... 1711.001.00---------------------------------------------------------------1.00--------------------------------------
..............................................................................................................................................CGCCGCGGGCCCCCC............................................................................................. 1511.001.001.00-----------------------------------------------------------------------------------------------------
...............................................................................................................CCGCCGGGGGCCCCGGGCG........................................................................................................................ 191.000.001.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................CCGGGGGGCCCGCGGGG............................................................................................. 171.000.00----------------1.00-------------------------------------------------------------------------------------
.........................................................................................................................................CCGCCGGGGGGCCCGCGGA.............................................................................................. 191.000.00----------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................GGCGGCGGGGAGGAGGAAA.............................................................................. 191.000.00---------------------------------------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................................ATCACTCGCTTGATCTA. 171.000.00------------------------------------------------1.00-----------------------------------------------------
..........................................................................................................................................CGCCGGGGGGCCCGCCCGC............................................................................................. 191.000.001.00-----------------------------------------------------------------------------------------------------
...............................................................................................................CCGCCGGGGGCCCCGGGGC........................................................................................................................ 191.000.001.00-----------------------------------------------------------------------------------------------------
.............................TTTGATTTACAGCAGCTGCTC........................................................................................................................................................................................................ 211.000.00---1.00--------------------------------------------------------------------------------------------------
.........................................................................TCGCGCCCGGGGGTGGGCC.............................................................................................................................................................. 191.000.00--------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................GGCCCGCGGCGGCGGGGTTCG................................................................................... 211.000.00-----------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................CTCCTCCCCGCCGCC.................................................................................. 1501.001.00---------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................................GGGGGGCCCGCGGCGCCA.......................................................................................... 181.000.00----1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................CCCCCCTCCTCCCCGCCG............................................................................. 1820.500.50--------------------------------------------------------------------------------------0.50---------------
...............................................................................................................CCGGGGCCCCCGGCGG........................................................................................................................... 1620.500.50-------------------0.50----------------------------------------------------------------------------------
......................................................................................................................................................................................................GGAGGGACTCGGCCC..................................... 1530.330.330.33-----------------------------------------------------------------------------------------------------
................................................................................................................................................CCGCCGCCGCGGGCCCC......................................................................................... 1730.330.330.33-----------------------------------------------------------------------------------------------------
........................................................................................................................................GGGCCCCCCGGCGGC................................................................................................... 1540.250.25------------------------------------0.25-----------------------------------------------------------------
..................................................................................................................................................CCCGCCGCCGCGGGCC........................................................................................ 1650.200.20-------------------------------------------------------------------------------------------0.20----------
..........................................................................................................................................................CCCCCTCCTCCCCGCCGC.............................................................................. 1860.170.17----------------------------------------------------------------------------------------------0.17-------
.........................................................................................................................................................CCCCTCCTCCCCGCCGCC............................................................................... 1860.170.17--------------------------------------------------------------------------------------0.17---------------
...............................................................................................................CCGCCGGGGGCCCCGGCG......................................................................................................................... 180.120.00--------------------------------------------------------------------------------------------------0.12---
...............................................................................................................CGGGGCCCCCGGCGG............................................................................................................................ 1580.120.12-------------------------------------------------------------------------------------------------0.12----
...............................................................................................................CCGCCGGGGGCCCCGCGGG........................................................................................................................ 190.120.00-----------------------------------------------------------------------------------------------0.12------
...............................................................................................................CCGCCGGGGGCCCCGCGG......................................................................................................................... 180.120.00------------------------------------------------------------------------------------------------0.12-----
.................................................................................................................................................................................................................GCCGGGGAGCGGGAG.......................... 1590.110.11-------------0.11----------------------------------------------------------------------------------------
..........................................................................................................................................................CCCCTCCTCCCCGCCGC............................................................................... 1790.110.11-----------------------------------------------------------------------------------------------------0.11