ID: uc011kjc.1_intron_4_0_chr7_99507284_r.5p
GENE: (2)
chr7:99515195-99515444-


(1)
AGO2.ip
(1)
B-CELL
(20)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(4)
SKIN
(1)
XRN.ip

Sense strand
CCCATTACTGATGGTGTAACTCCAGTGGTCTCCAGCAGAATTGATATGCAGTAAGTACATGAACACATGAATTTATTTATTTATTTTATTATTATTGTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAATGCAGTGGTGAGATCTCAACTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCTTACCGAGTAGCTGGGATTACAGGCACCTGCCAGCATGCCCAGCT
..................................................................((((((......)))))).......................((((.....))))....((....))......................................................................................................................
................................................................65....................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.....................................................................AATTTATTTATTTATTTTATTCG..............................................................................................................................................................2311.000.00--7.001.00-2.00---1.00----------------------------
................................................................................................................................................................................................................................ACAGGCACCTGCCAGCATGCCGGCT.253.000.001.002.00------------------------------------
...........................................................................................................................................................ACTCACTGCAACCTCCACCTCCCGGTCTC..................................................................293.000.003.00-------------------------------------
...........................................................................................................................................................ACTCACTGCAACCTCCACCTCCCGGCCTC..................................................................292.000.001.001.00------------------------------------
.....................................................................AATTTATTTATTTATTTTCCTG...............................................................................................................................................................222.000.00--2.00-----------------------------------
......................................................................................................................................................TCTCAACTCACTGCAACCTCCACTGA..........................................................................261.000.00---------------------1.00----------------
..............................................................................................................GTTTCGCTCTTGTTGCCGAGT.......................................................................................................................211.000.00------------------------------------1.00-
..........................................................................................................TGGAGTTTCGCTCTTGTTGCCCAGGGGGG...................................................................................................................291.000.001.00-------------------------------------
.....................................................................AATTTATTTATTTATTTTATTATTATTG.........................................................................................................................................................2811.001.00---1.00----------------------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGGACC.................................................................271.000.00----1.00---------------------------------
........................................................................................................................................................................................................................................CTGCCAGCATGCCCAGCTAATT221.000.00-----------------------------------1.00--
................................................................................................................................................................................................................................ACAGGCACCTGCCAGCATGCCGGC..241.000.001.00-------------------------------------
.............................................................................................................................CCCAGGCTGGAATGCAGTGGTGACATA..................................................................................................271.000.00--------------------------------1.00-----
.......................................................TACATGAACACATGAGAA.................................................................................................................................................................................181.000.00----------------------------------1.00---
...........................................................................................................................................................ACTCACTGCAACCTCCACCTGGGT.......................................................................241.000.00-1.00------------------------------------
...........................................................................................................................................................ACTCACTGCAACCTCCACCTGGG........................................................................231.000.00-1.00------------------------------------
...........................................................................................................................................................ACTCACTGCAACCTCCACCTCCCGGGTGGAG................................................................311.000.001.00-------------------------------------
........................................................................................................................TGTTGCCCAGGCTGGAATGCAGTGGTG.......................................................................................................2701.001.00-------1.00------------------------------
.......................................................................TTTATTTATTTATTTTATTCTAG............................................................................................................................................................231.000.00-----1.00--------------------------------
...............................................................................................................................................................................................................ACCGAGTAGCTGGGATTACAACAG...................241.000.00--------1.00-----------------------------
.....................................................................AATTTATTTATTTATTTTATTCA..............................................................................................................................................................231.000.00---1.00----------------------------------
..........................................................................................................................................................AACTCACTGCAACCTCCACCTCCCGGTCC...................................................................291.000.001.00-------------------------------------
...............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT..............................................291.000.00---------------------------1.00----------
..................................................................................................................................GCTGGAATGCAGTGGTGACATA..................................................................................................221.000.00-------------------------------------1.00
..........................................................................................................TGGAGTTTCGCTCTTGTTGCCGAGG.......................................................................................................................251.000.00------------1.00-------------------------
...............................................................................................................TTTCGCTCTTGTTGCCCAGGCTGGACCGC..............................................................................................................291.000.001.00-------------------------------------
..................ACTCCAGTGGTCTCCAGCAGA...................................................................................................................................................................................................................2111.001.00----1.00---------------------------------
...............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG................................................271.000.00-------------------------1.00------------
.....................................................................AATTTATTTATTTATTTTACTCG..............................................................................................................................................................231.000.00--1.00-----------------------------------
....................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA.............................................251.000.00-----------------------------1.00--------
.............................................................................................................................................................TCACTGCAACCTCCACCTCCCGGGACCA.................................................................281.000.001.00-------------------------------------
...............................................................................................................................................................................................................ACCGAGTAGCTGGGATTATAGT.....................221.000.00--------1.00-----------------------------
.....................................................................AATTTATTTATTTATTTTATTATTACTG.........................................................................................................................................................281.000.00-----1.00--------------------------------
.......................................................................TTTATTTATTTATTTTATTATTATACG........................................................................................................................................................271.000.00---1.00----------------------------------
..................................................GTAAGTACATGAACACATGAATTT................................................................................................................................................................................2411.001.00------------------1.00-------------------
................................................................................................GTTTTTGAGATGGAGCTCG.......................................................................................................................................191.000.00--------1.00-----------------------------
.....................................................................AATTTATTTATTTATTTCCTG................................................................................................................................................................211.000.00---------1.00----------------------------
........................................................................................................................................................................................................................CTGGGATTACAGGCACCTGCAGAA..........241.000.00-----------------------1.00--------------
.....................................................................AATTTATTTATTTATTTTCCA................................................................................................................................................................211.000.00---------1.00----------------------------
.......................................ATTGATATGCAGTAAGTA.................................................................................................................................................................................................1811.001.00------------------------------1.00-------
...........................................................................................................................................................ACTCACTGCAACCTCCACCTTGGG.......................................................................241.000.001.00-------------------------------------
...............................................................................................................................................................................................................ACCGAGTAGCTGGGATTACAGGCACCGCC..............291.000.00-1.00------------------------------------
....................................................................................................................CTCTTGTTGCCCAGGCTGGAATGCAGCGCG........................................................................................................301.000.00-1.00------------------------------------
.......................................................................................................................................................................................................................GCTGGGATTACAGGCACCTGA..............211.000.00----------------------------1.00---------
...........................................................................................................................................................ACTCACTGCAACCTCCACCGGGT........................................................................231.000.001.00-------------------------------------
.......................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA.............................................221.000.00--------------------1.00-----------------
..........................................................................................................................................................AACTCACTGCAACCTCCACCCTGG........................................................................241.000.001.00-------------------------------------
........................................................................TTATTTATTTATTTTATTATTATTG.........................................................................................................................................................2540.250.25--0.25-----------------------------------

Antisense strand
CCCATTACTGATGGTGTAACTCCAGTGGTCTCCAGCAGAATTGATATGCAGTAAGTACATGAACACATGAATTTATTTATTTATTTTATTATTATTGTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAATGCAGTGGTGAGATCTCAACTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCTTACCGAGTAGCTGGGATTACAGGCACCTGCCAGCATGCCCAGCT
..................................................................((((((......)))))).......................((((.....))))....((....))......................................................................................................................
................................................................65....................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..............................................................................................................GTTTCGCTCTTGTTGCCCAGGCTGGAATGCCT............................................................................................................ 322.000.002.00-------------------------------------
...............................................................................................................................................................ACTGCAACCTCCACCTCCCGGGCTG.................................................................. 252.000.00----------2.00---------------------------
.....................................................................................................................................................................ACCTCCACCTCCCGGAAG................................................................... 182.000.00---------------1.00-1.00--------------------
...............................................................................................................................................................ACTGCAACCTCCACCTCCCGTT..................................................................... 222.000.00--------------1.00----1.00------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTCAGGAG............................................................. 311.000.00-1.00------------------------------------
...............................................................................................................................................................ACTGCAACCTCCACCTCCCGGGTTTT................................................................. 261.000.00-------------1.00------------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTTCT................................................................ 281.000.00-------------------------------1.00------
....................................................................................................................................................................GGAGAATCACTTGAACCCGGGAGGTGGAGGTT...................................................... 3201.001.00------1.00-------------------------------
.....................................................................................................................................................................ACCTCCACCTCCCGGATAA.................................................................. 191.000.00--------------1.00-----------------------
...............................................................................................................................................................................................................ACCGAGTAGCTGGGATTACAGGCTG.................. 251.000.00--------------------------1.00-----------
...................................................................................................................................................................CAACCTCCACCTCCCGGAATA.................................................................. 211.000.00---------------1.00----------------------
..............................................................................................................................................................................................TTCTCCTGCCTCAGCTTGGCC....................................... 211.000.001.00-------------------------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTGGG................................................................ 281.000.00-1.00------------------------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTCAAGTCGAG.......................................................... 341.000.00----1.00---------------------------------
........................................................................................................................................................................GCAGGAGAATCACTTGAACCCGGGAGGTGGA................................................... 3101.001.00-----------1.00--------------------------
................................................................................................................................................................AATCACTTGAACCCGGGAGGTGGAGGTTGCAG.......................................................... 3201.001.00------1.00-------------------------------
.....................................................................................................................................................................ACCTCCACCTCCCGGGTTCAAGTCGCC.......................................................... 271.000.00-1.00------------------------------------
..................................................................................................................................................................GCAACCTCCACCTCCCGGGTTCAAGTGAGC.......................................................... 301.000.001.00-------------------------------------
.............................................................................................................................CTCACCACTGCATTCCAGCCTGGG..................................................................................................... 2401.001.00-----------1.00--------------------------
...............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT.................................................... 231.000.00-------1.00------------------------------
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTT.................................................................. 261.000.00---------------------------------1.00----
..............................................................................................................................................................CACTGCAACCTCCACCTCCCGGGTTCGGC............................................................... 291.000.00------------1.00-------------------------
...........................................................................................................................................................................ACCTCCCGGGTTCAAGTGATCGG........................................................ 231.000.00-1.00------------------------------------
........................................................ACATGAACACATGAATTCTG.............................................................................................................................................................................. 201.000.00-------------1.00------------------------
...............................................................................................................................................................ACTGCAACCTCCACCTCCCGGGTTCAACT.............................................................. 291.000.00----------------------1.00---------------
..........................................................................................................................................................AACTCACTGCAACCTCCACCTCCCGGGTTCTAT............................................................... 331.000.00-1.00------------------------------------
......................................................................................................................CTTGTTGCCCAGGCTGGAATGGAG............................................................................................................ 241.000.001.00-------------------------------------
......................................AATTGATATGCAGTAATGC................................................................................................................................................................................................. 191.000.00----------------1.00---------------------
....................................................................................................................................................................AACCTCCACCTCCCGGGTC................................................................... 191.000.00------------------------1.00-------------
.....................................................................................................................................................................AGGAGAATCACTTGAACCCGGGAGGTGGAGGT..................................................... 3201.001.00-------1.00------------------------------
............................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCTGGGAC................................................ 301.000.00----1.00---------------------------------
............................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCA..................................................... 251.000.00------1.00-------------------------------
...............................................................................................................................................................ACTGCAACCTCCACCTCCCGGGTTCTC................................................................ 271.000.001.00-------------------------------------