| (1) AGO1.ip | (1) AGO2.ip | (1) B-CELL | (1) BRAIN | (15) CELL-LINE | (3) FIBROBLAST | (3) HEART | (1) HELA | (2) LIVER | (2) OTHER | (11) SKIN | (1) UTERUS | (1) XRN.ip |
| TTTTAAAGTGAATTAAATATTTTGCCTGCTGTTGAACCTGGCCTTGTGCGTCAGATCAGTGCTGCAGTATTTGCTTCCTTGGTCCAAAGGCAGATCAGACACCTGTTTCTGACTTGACATTGGTTATTTTCAGTACAAATTATCTTTATCCAGAGCTCAGCAGAGAGCAGCACTGTTTATAACATCTTGTCTCTGAGCAGGTTGGACGCGTGTATCCCCAAGCGGTCTACTTTCCCATCCGGACCCTGTA ..........................................................................................................................................................((((((.((((((((....)))))...........))))))))).................................................... ...........................................................................................................................124.........................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR363675(GSM830252) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR330881(SRX091719) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR363676(GSM830253) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR343335 | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR363673(GSM830250) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | DRR000560(DRX000318) Isolation of RNA following immunoprecipitatio. (ago1 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................TTATAACATCTTGTCTCTGAGCAG.................................................. | 24 | 1 | 36.00 | 36.00 | 3.00 | 5.00 | 2.00 | 3.00 | 2.00 | 1.00 | - | 2.00 | 2.00 | 2.00 | - | 2.00 | 1.00 | 1.00 | - | 2.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - |
| ..............................................................................................................................................................................GTTTATAACATCTTGTCTCTGAGCAG.................................................. | 26 | 1 | 11.00 | 11.00 | 6.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGTTTATAACATCTTGTCTCTGAGCAG.................................................. | 27 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TATAACATCTTGTCTCTGAGCAG.................................................. | 23 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................AACATCTTGTCTCTGAGCAG.................................................. | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................TTTATAACATCTTGTCTCTGAGCAG.................................................. | 25 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................AGGTTGGACGCGTGTATA.................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGGTTGGACGCGTGTATC.................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................AGCGGTCTACTTTCCCATCCGGACCCTG.. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TTCAGTACAAATTATCTTATG..................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................CTTGTCTCTGAGCAGGTTGGACGCG........................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................CTTGTGCGTCAGATCAGTG............................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................AAGCGGTCTACTTTCCCATC........... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CAGGTTGGACGCGTGTATA.................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................AGCGGTCTACTTTCC............... | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TGCGTCAGATCAGTGCTGCAGTATTTGCCTCC............................................................................................................................................................................ | 32 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ............................................................................................................................................................................CTGTTTATAACATCTTGTCTCTGAGCAG.................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................TTGTCTCTGAGCAGGTTGGACG.......................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................AGCAGCACTGTTTATAAC................................................................... | 18 | 5 | 0.60 | 0.60 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.60 | - |
| TTTTAAAGTGAATTAAATATTTTGCCTGCTGTTGAACCTGGCCTTGTGCGTCAGATCAGTGCTGCAGTATTTGCTTCCTTGGTCCAAAGGCAGATCAGACACCTGTTTCTGACTTGACATTGGTTATTTTCAGTACAAATTATCTTTATCCAGAGCTCAGCAGAGAGCAGCACTGTTTATAACATCTTGTCTCTGAGCAGGTTGGACGCGTGTATCCCCAAGCGGTCTACTTTCCCATCCGGACCCTGTA ..........................................................................................................................................................((((((.((((((((....)))))...........))))))))).................................................... ...........................................................................................................................124.........................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR363675(GSM830252) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR330881(SRX091719) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR363676(GSM830253) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR343335 | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR363673(GSM830250) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | DRR000560(DRX000318) Isolation of RNA following immunoprecipitatio. (ago1 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................TCCCCAAGCGGTCTACTTGTAC.............. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................AATACTGCAGCACTGATCTGACGC................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TCCCCAAGCGGTCTACTTG................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................TTTGGACCAAGGAAGC.................................................................................................................................................................. | 16 | 5 | 0.40 | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.40 |