ID: uc011kis.1_intron_29_0_chr7_98535444_f.3p
GENE: (30)
chr7:98540372-98540621+


(1)
AGO2.ip
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(4)
OTHER
(14)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
GAGCAAGGCAGGCTTTTTATTTTGAAACATGAACAAATGCCAGTTATTCTCATCACTAGTTAGATGGTTGCGCTGTTTTAATAATGGAAACACTGCAGTTCTCACACTAAACACGATGGAAATGAATGATTACATAGTAGTTTCCACCAGTGGAATGCACCTACTGTGAAGTTGTGTCTCAGGATGTGTTTTTCCAACAGCAACATCTGCGCAAGTGGATGGAAGTGGTGGTGATCACCCACAAAGGGGG
.............................................................................................................................((((((.((((((((.(((((....))))).....)))))))).))))))......(((........))).......................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACAG..................................................22131.0031.0015.002.00-2.001.002.001.00---1.00-1.001.00---1.001.001.00---1.001.00-----
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAAC....................................................2016.006.004.00---2.00-------------------------
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACA...................................................2115.005.001.00-3.00----1.00----------------------
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACAGA.................................................2313.0031.00--------1.00-----------1.00----1.00----
.................................................................................................................................TTACATAGTAGTTTCTACG......................................................................................................191.000.001.00-----------------------------
....................................................................................................................................................AGTGGAATGCACCTACTGTGA.................................................................................2111.001.00------1.00-----------------------
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACGT..................................................2211.006.001.00-----------------------------
......................TGAAACATGAACAAATATAT................................................................................................................................................................................................................201.000.001.00-----------------------------
...............................................TCTCATCACTAGTTAGATGGTTGCGCT................................................................................................................................................................................2711.001.00---------------1.00--------------
...................................................................................................................................................CAGTGGAATGCACCTACTG....................................................................................1911.001.001.00-----------------------------
...................................................................................................................................................................................CAGGATGTGTTTTTCCAACTGA.................................................221.000.00---1.00--------------------------
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACAGTTT...............................................2511.0031.00---------1.00--------------------
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACAGT.................................................2311.0031.00--------------1.00---------------
.......................................................CTAGTTAGATGGTTGCGCT................................................................................................................................................................................1911.001.00---------------------1.00--------
.........................................................................................................................................................................................................................GATGGAAGTGGTGGTGTT...............181.000.00----------------1.00-------------
....................................................................................................................................................................................................................AAGTGGATGGAAGTGGTGGGGA................221.000.00-----------1.00------------------
.........AGGCTTTTTATTTTGATT...............................................................................................................................................................................................................................181.000.00----------------------------1.00-
..................................................................................................................................................................................TCAGGATGTGTTTTTCCAACAT..................................................2211.005.00---------------------------1.00--
...................................................................................ATGGAAACACTGCAGT.......................................................................................................................................................1660.170.17-----------------------------0.17

Antisense strand
GAGCAAGGCAGGCTTTTTATTTTGAAACATGAACAAATGCCAGTTATTCTCATCACTAGTTAGATGGTTGCGCTGTTTTAATAATGGAAACACTGCAGTTCTCACACTAAACACGATGGAAATGAATGATTACATAGTAGTTTCCACCAGTGGAATGCACCTACTGTGAAGTTGTGTCTCAGGATGTGTTTTTCCAACAGCAACATCTGCGCAAGTGGATGGAAGTGGTGGTGATCACCCACAAAGGGGG
.............................................................................................................................((((((.((((((((.(((((....))))).....)))))))).))))))......(((........))).......................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................TGGAAATGAATGATTACACG.................................................................................................................. 202.000.00-2.00----------------------------
..............................................................................................................................................................................TGTCTCAGGATGTGTTTTTA........................................................ 201.000.00--------------------------1.00---
..................................................................................................................................................................................................................GCAAGTGGATGGAAGTAAG..................... 191.000.00----------------------1.00-------