ID: uc011khw.1_intron_6_0_chr7_92463005_r
GENE: (1)
chr7:92462955-92463236-


(1)
AGO3.ip 		(11)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(34)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CCTGCAACCTCTCCGCGCGAAGACGGCTTCAGCCCTGCAGGGAAAGAAAAGTAACTTCGCTTTTCTCGGAGGAACCAGGAAGGATTAAGCGGCTTGGGAGAGGGCAGGAGCGCGCGGAGGGTAGCGATGGAGGCTTCGTAAAGGAGGAGGAGGGGAGTCTGGAGGAACCCCGAGGAAGGCTTCTGGGCTGTCTGATTGCACTTTCTTCTTATCCTCCCGTCTCCTCCTTTAGGTGCAATGATTCTGGACTGAGACGCGCTTGGGCAGAGGCTATGTAATCGT
...........................................................................................((((......))))..(((.(((.(((((((.((((........)))).((((((((((.(((.((((..((((..((....))....))))..)))).))).......)))))))))))))))))))))))...........................................................
.......................................................................................88.....................................................................................................................................223.........................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343335SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343334DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
...............................................................................................................................................GAGGAGGAGGGGAGTCTGGAGGAACCCCGAGGAAGGCTTCTGGGCTGTCTGATTGCACTTTCTTCTTATCCTCCCGTCTCCTCCTTTAG..................................................8917.007.00---7.00---------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................ATTGCACTTTCTTCTTATCCTCCCG...............................................................2514.004.00---------3.00--------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CAATGATTCTGGACTGAGACGCGCTTGATC.................304.000.00-------4.00-----------------------------------------------------------------------------------------------
............................................................................................CTTGGGAGAGGGCAGGAG............................................................................................................................................................................1813.003.00---------------3.00---------------------------------------------------------------------------------------
..............................................................................................TGGGAGAGGGCAGGAGCG..........................................................................................................................................................................1813.003.00-1.00-----------------1.00----------------------------------------------------------------------------1.00------
........................................................................................................................................................................................................................................................CTGAGACGCGCTTGGGCAGAGGCTATGT......2813.003.003.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................GACGCGCTTGGGCAGAGGC...........1913.003.00--3.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCAATGATTCTGGACTGA..............................1813.003.003.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTACT...................202.000.00----------2.00--------------------------------------------------------------------------------------------
.................................................................TCGGAGGAACCAGGAAGGATT....................................................................................................................................................................................................2112.002.00--------2.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCT......................2012.002.00--------------------1.00-------------------------------------------------------------------------1.00--------
..................................................................................................................................................................................................................................................TCTGGACTGAGACGCGCTTGGGC.................2312.002.00------------------------------------------------1.00--------1.00---------------------------------------------
................................................................CTCGGAGGAACCAGGAAGGAT.....................................................................................................................................................................................................2112.002.00-1.00----------------------------1.00------------------------------------------------------------------------
................................................................................................................CGCGGAGGGTAGCGATGGAGGCTTC.................................................................................................................................................2512.002.00--------------------------1.00------------------------------------1.00---------------------------------------
........CTCTCCGCGCGAAGACGG................................................................................................................................................................................................................................................................1812.002.00-----------------1.00----------1.00--------------------------------------------------------------------------
............................................................................................CTTGGGAGAGGGCAGGAGCGCGC.......................................................................................................................................................................2312.002.00----------------------------------------1.00---------------------------------1.00----------------------------
.........................................................................................................................................................................................................................................TGCAATGATTCTGGACTGAGACGCGC.......................2612.002.00-----2.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCTTGGGCAGAGGCC..........312.000.00---------------------------2.00---------------------------------------------------------------------------
......................................................CTTCGCTTTTCTCGGAGG..................................................................................................................................................................................................................1812.002.00--2.00----------------------------------------------------------------------------------------------------
............................................................................................CTTGGGAGAGGGCAGGAGCGCG........................................................................................................................................................................2212.002.00------2.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTT.....................2112.002.00-----------1.00--1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................ATGATTCTGGACTGAGACGCGCT......................2312.002.00--------1.00----------------------------------------------------------------------------------1.00-----------
...............................................................................................................................................................................................................................................................GCGCTTGGGCAGAGGC...........1612.002.002.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................TGGACTGAGACGCGCTT.....................1711.001.00-------------------------------------------------1.00-----------------------------------------------------
.........................................................................................................................................................................CCGAGGAAGGCTTCTGGGC..............................................................................................1911.001.00-1.00-----------------------------------------------------------------------------------------------------
.......................................................................................................GCAGGAGCGCGCGGAGGGTAG..............................................................................................................................................................2111.001.00--------------------------1.00----------------------------------------------------------------------------
.................................CCTGCAGGGAAAGAAAAGTGCA...................................................................................................................................................................................................................................221.000.00---------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................TAAAGGAGGAGGAGGTATA.............................................................................................................................191.000.00-----------------------------------------------------------------------1.00-------------------------------
.......................................................................................................GCAGGAGCGCGCGGAGATT................................................................................................................................................................191.000.00----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCAATGATTCTGGACTGAGA............................2011.001.00-----------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTTGGGCAGA..............2511.001.00--------------------------------------------------------------------------------------1.00----------------
................................CCCTGCAGGGAAAGAAAAG.......................................................................................................................................................................................................................................1911.001.00----------------------------------------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................TTCTTCTTATCCTCCAAAG.............................................................191.000.00---------------------------------------1.00---------------------------------------------------------------
......................................AGGGAAAGAAAAGTAACTTCG...............................................................................................................................................................................................................................2111.001.00------1.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCTTGGG..................2311.001.00------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................AGGAGGGGAGTCTGGAGGAACCCCGAGGAAGGC......................................................................................................3311.001.00----------------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CAATGATTCTGGACTGA..............................1711.001.00--------------------------------------1.00----------------------------------------------------------------
............................................................................................................................................................................AGGAAGGCTTCTGGGCTGTCT.........................................................................................2111.001.00----1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................AGGCTTCTGGGCTGTCTGATTGCACTTC..............................................................................281.000.00----------------------1.00--------------------------------------------------------------------------------
..................................................................................................................CGGAGGGTAGCGATGGAGG.....................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CAATGATTCTGGACTGAGA............................1911.001.00------------------------------------------------------------1.00------------------------------------------
..........................................AAAGAAAAGTAACTTCGCTTTTCTCGGAGGAACCAGGAAGGATT....................................................................................................................................................................................................4411.001.00---1.00---------------------------------------------------------------------------------------------------
...........TCCGCGCGAAGACGG................................................................................................................................................................................................................................................................1511.001.00----------------------------1.00--------------------------------------------------------------------------
....................................................................................................AGGGCAGGAGCGCGCGGAG...................................................................................................................................................................1911.001.00-----------------------------------------------1.00-------------------------------------------------------
.................................................................TCGGAGGAACCAGGAAG........................................................................................................................................................................................................1711.001.00-----------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCTTGGGCAGAGG............2911.001.00--1.00----------------------------------------------------------------------------------------------------
......................................AGGGAAAGAAAAGTAACT..................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------1.00-----------------------------------------
........................................................................................................................................................................................................CTTTCTTCTTATCCTCCCG...............................................................1911.001.00------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCTTGG...................2211.001.00-----------------------1.00-------------------------------------------------------------------------------
...................................................................................ATTAAGCGGCTTGGGAG......................................................................................................................................................................................1711.001.00------------1.00------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................CGCTTGGGCAGAGGCTATGTA.....2111.001.00--------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................GGAGGAGGAGGGGAGTCTT.........................................................................................................................191.000.00-------------------------------------------------------------------------1.00-----------------------------
..............................................................................................................................................................................................................................................................CGCGCTTGGGCAGAGGC...........1711.001.00--1.00----------------------------------------------------------------------------------------------------
..................................................................................GATTAAGCGGCTTGGGAG......................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------1.00---------------------------
..........................................................................................................................................TAAAGGAGGAGGAGGGGAGT............................................................................................................................2011.001.00---------------------------------------------------------------------------------------1.00---------------
................................................................CTCGGAGGAACCAGGAAGGATT....................................................................................................................................................................................................2211.001.00----------------1.00--------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGGGCAGAGGCTATGT......3611.001.00---1.00---------------------------------------------------------------------------------------------------
....................AGACGGCTTCAGCCCTGCA...................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00-----------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGGGCAGAGG............3011.001.00-----------------------------------------------------------------------------------1.00-------------------
............................................................................................CTTGGGAGAGGGCAGGAGCG..........................................................................................................................................................................2011.001.00-------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TGCAATGATTCTGGACTGAGACGC.........................2411.001.00-------------------------------1.00-----------------------------------------------------------------------
.....................................CAGGGAAAGAAAAGTAACTTCGCT.............................................................................................................................................................................................................................2411.001.00------------1.00------------------------------------------------------------------------------------------
...........................................................CTTTTCTCGGAGGAACCAGGA..........................................................................................................................................................................................................2111.001.00-----------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................TCTGGACTGAGACGCGCT......................1811.001.00-----1.00-------------------------------------------------------------------------------------------------
............................................................................AGGAAGGATTAAGCGGCTTGGG........................................................................................................................................................................................2211.001.00-------------------------1.00-----------------------------------------------------------------------------
.................................................................................GGATTAAGCGGCTTGCAAC......................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------1.00---------------------
.................CGAAGACGGCTTCAGCCCTGCAG..................................................................................................................................................................................................................................................2311.001.00----------------------------------1.00--------------------------------------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTG....................2211.001.00----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCAATGATTCTGGACTGAGACGCGCTT.....................2711.001.00---------------------------------1.00---------------------------------------------------------------------
......................................................................................AAGCGGCTTGGGAGAGGG..................................................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GATTCTGGACTGAGACG..........................1721.001.00-------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................CGCGCTTGGGCAGAGGCTATG.......2111.001.00-1.00-----------------------------------------------------------------------------------------------------
..............................................................TTCTCGGAGGAACCAGGAAGGAT.....................................................................................................................................................................................................2311.001.00----------------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................TCTGGACTGAGACGCGCTTGG...................2111.001.00------------------------------------------1.00------------------------------------------------------------
...................................................................GGAGGAACCAGGAAGGAT.....................................................................................................................................................................................................1811.001.00-----------------------------------1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................TGGACTGAGACGCGCTTGGGCAGAGGCTA.........2911.001.00----------------------------------------------------------1.00--------------------------------------------
.......................................................................................................................................................................................................................CCCGTCTCCTCCTTTCGGC................................................191.000.00--------------------1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTTGG...................2011.001.00----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCAATGATTCTGGACTGAGACGCGCTTGGGCAGAGG............3611.001.00-----------------------------------------------------------------------------------------------1.00-------
..........................................................................................................................................................................................................................................................GAGACGCGCTTGGGCAGAGGC...........2111.001.00-------------------------1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................TGGACTGAGACGCGCTTGGGCAGA..............2411.001.00---------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................ACGCGCTTGGGCAGAGGCTATG.......2211.001.001.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................TGAGACGCGCTTGGGCAGAGGCTATGT......2711.001.00-----------------------------------------------------------------1.00-------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGGGC.................2511.001.00--------------------------------1.00----------------------------------------------------------------------
................................................................................................................CGCGGAGGGTAGCGATGG........................................................................................................................................................1811.001.00--1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TGGGCTGTCTGATTGCA..................................................................................1711.001.00-------------------------------------------------------------------------------1.00-----------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGG...................2311.001.00-----------------------------------------------------------------------------1.00-------------------------
....................................................................................................................................................................................................................................................TGGACTGAGACGCGCTTGGGCAGAGGCT..........2811.001.00--1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGC.......................1811.001.001.00------------------------------------------------------------------------------------------------------
..............................................................................................................CGCGCGGAGGGTAGCGATGGAGGCT...................................................................................................................................................2511.001.00-1.00-----------------------------------------------------------------------------------------------------
.............................................................TTTCTCGGAGGAACCAGGAAGGAT.....................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------------------------------------------------------------------
.........................................................................................................................................GTAAAGGAGGAGGAGGGGAGT............................................................................................................................2111.001.00---------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................GATGGAGGCTTCGTAAAGGAGGAGGAGGGGAGTCTGGAGGAACCCCGAGGAAGGCTTCTGGGCTGTCTG........................................................................................6911.001.00-------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTTGGGT.................2211.001.00-----------------------------------------------------------1.00-------------------------------------------
.............................................................................................................GCGCGCGGAGGGTAGCGAT..........................................................................................................................................................1911.001.00------------------------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................................................................................GATTCTGGACTGAGACGCGCT......................2111.001.00----------------------------------------------------------------1.00--------------------------------------
.........TCTCCGCGCGAAGACGGC...............................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................................TTTAGGTGCAATGATTCTGGACTGAGAC...........................2811.001.00--------------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................ACTGAGACGCGCTTGGGCAA...............201.000.00--------------------------------------------------------------------------------------------1.00----------
....................................................................................................................................................................................................................................................TGGACTGAGACGCGCTTGGGCAGAG.............2511.001.00-----1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................TCTGGACTGAGACGCGCTT.....................1911.001.00-------------------------------1.00-----------------------------------------------------------------------
.........................................................................................................AGGAGCGCGCGGAGGGTAG..............................................................................................................................................................1911.001.00----------------------------------1.00--------------------------------------------------------------------
.............................................................................................TTGGGAGAGGGCAGGAGCGCGCGGAGGG.................................................................................................................................................................2811.001.001.00------------------------------------------------------------------------------------------------------
...........................................................................................................GAGCGCGCGGAGGGTAGCGATGGAGGCTTCG................................................................................................................................................3111.001.001.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTT.....................1811.001.00----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCAATGATTCTGGACTGAGAC...........................2111.001.00-------------------------------------1.00-----------------------------------------------------------------
................................................................................AGGATTAAGCGGCTTGGGT.......................................................................................................................................................................................191.000.00--------------------------------------------------1.00----------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTACC...................201.000.00----------1.00--------------------------------------------------------------------------------------------
....................................................................GAGGAACCAGGAAGGATTAAGCG...............................................................................................................................................................................................2311.001.00------------------------------------------------------------------------1.00------------------------------
...............................................................................................................................................................................................................................................................GCGCTTGGGCAGAGGCTATG.......2011.001.00-------------1.00-----------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................TCTGGACTGAGACGCGCTTGGG..................2211.001.00-------------------------------------------------------------------------------------1.00-----------------
................................................................CTCGGAGGAACCAGGAAGGATTAAGCGG..............................................................................................................................................................................................2811.001.00----------------------------------------------------------------------------------1.00--------------------
............................................................................................................................................................................................................................................AATGATTCTGGACTGAGACGCGT.......................231.000.00--------------------------------------------------------------1.00----------------------------------------
..........................................................................................................................................................................................................................................................GAGACGCGCTTGGGCAGAGGCTAT........2411.001.00------------------------------------------------------------------1.00------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGGA..................2411.001.00------------------------------------------------------1.00------------------------------------------------
..................................CTGCAGGGAAAGAAAAGT......................................................................................................................................................................................................................................1811.001.00-----------------------------1.00-------------------------------------------------------------------------
..................................................................................................................CGGAGGGTAGCGATGGAGGCTT..................................................................................................................................................2211.001.00------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................TGATTCTGGACTGAGACGCGCTTGGGC.................2711.001.00-----1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTCTGGGCTGTCTGATTGCA..................................................................................2011.001.00--------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................CTGGACTGAGACGCGCTTGGG..................2111.001.00-----------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................ATTCTGGACTGAGACGCGCTTGGGCAG...............2711.001.00--1.00----------------------------------------------------------------------------------------------------
.......................................................................GAACCAGGAAGGATTAAGCGGCTTGGGAGAGG...................................................................................................................................................................................3211.001.00---------------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................TTGGGCAGAGGCTATGTA.....1811.001.00--------------------------------------------------------------------1.00----------------------------------
..........................................................................................................................................................................................................................................................GAGACGCGCTTGGGCAGA..............1811.001.001.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................ACTGAGACGCGCTTGGGCAGA..............2111.001.00-1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCTT.....................2011.001.00------------1.00------------------------------------------------------------------------------------------
.......................................................................................................GCAGGAGCGCGCGGAGGGTAGC.............................................................................................................................................................2211.001.00-1.00-----------------------------------------------------------------------------------------------------
..............................................................TTCTCGGAGGAACCAGGAAGGA......................................................................................................................................................................................................2211.001.00----1.00--------------------------------------------------------------------------------------------------
.................................................................TCGGAGGAACCAGGAAGGATTAA..................................................................................................................................................................................................2311.001.00------------------------------1.00------------------------------------------------------------------------
................................................................CTCGGAGGAACCAGGAAGGATTAAGCG...............................................................................................................................................................................................2711.001.00--------------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTCTGGACTGAGACGCGCT......................1911.001.00--1.00----------------------------------------------------------------------------------------------------
..................................................................CGGAGGAACCAGGAAGGATT....................................................................................................................................................................................................2011.001.00----1.00--------------------------------------------------------------------------------------------------
................................................................................................................CGCGGAGGGTAGCGATGGA.......................................................................................................................................................1911.001.00----------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................................GAGTCTGGAGGAACCCCG..............................................................................................................1811.001.001.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................AGGTGCAATGATTCTGGACTGAG.............................2311.001.00--1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................ATGATTCTGGACTGAGA............................1720.500.50---------------------------------------------------------------------------------------------------0.50---
...........................................................................................................................................................................GAGGAAGGCTTCTGGGC..............................................................................................1720.500.50--------------------------------------------------------------------------------------------------0.50----
............................................................................................................................................................................................................................................AATGATTCTGGACTGA..............................1620.500.500.50------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACTTTCTTCTTATCCTCCC................................................................1920.500.50------------------0.50------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACTTTCTTCTTATCCTCC.................................................................1830.330.33---------0.33---------------------------------------------------------------------------------------------
.....................................................................AGGAACCAGGAAGGATTA...................................................................................................................................................................................................1830.330.33-----------------------------------------------------------------------------------------------------0.33-
.................................................................................................GAGAGGGCAGGAGCG..........................................................................................................................................................................1550.200.20------------------------------------------------------------------------------------------------------0.20
..................................................................................................AGAGGGCAGGAGCGC.........................................................................................................................................................................1590.110.11-----0.11-------------------------------------------------------------------------------------------------

Antisense strand
CCTGCAACCTCTCCGCGCGAAGACGGCTTCAGCCCTGCAGGGAAAGAAAAGTAACTTCGCTTTTCTCGGAGGAACCAGGAAGGATTAAGCGGCTTGGGAGAGGGCAGGAGCGCGCGGAGGGTAGCGATGGAGGCTTCGTAAAGGAGGAGGAGGGGAGTCTGGAGGAACCCCGAGGAAGGCTTCTGGGCTGTCTGATTGCACTTTCTTCTTATCCTCCCGTCTCCTCCTTTAGGTGCAATGATTCTGGACTGAGACGCGCTTGGGCAGAGGCTATGTAATCGT
...........................................................................................((((......))))..(((.(((.(((((((.((((........)))).((((((((((.(((.((((..((((..((....))....))))..)))).))).......)))))))))))))))))))))))...........................................................
.......................................................................................88.....................................................................................................................................223.........................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343335SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343334DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
......................................................................................................................................................................................................GAGGATAAGAAGAAAGTG.................................................................. 1823.503.50-1.00-----------------0.50---------------1.000.50---------------------------------------------------------------0.50--
.............................................................................................................................................................................................................................ATTGCACCTAAAGGAGGA........................................... 1812.002.00-----------------2.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................GAGACGGGAGGATAAGAAG........................................................... 1911.001.00-1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGGAGACGGGAGGATAAG......................................................... 1811.001.00------------------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................................GAGGATAAGAAGAAAGTGCAATC.................................................................. 2311.001.00---------------------------------------------------1.00---------------------------------------------------
.........................................................................................................................................................................................................GAGACGGGAGGATAAGAAGAAA........................................................... 2211.001.00---------------------------------1.00---------------------------------------------------------------------
...................................................................................................................................................................................................................................CCAGAATCATTGCACCTAAA................................... 2011.001.00-----------------------------------------1.00-------------------------------------------------------------
.................................................................................................................................................GGAGGAGGGGAGTCTGCTAG..................................................................................................................... 201.000.00----------------------------------------------------------------------1.00--------------------------------
..........................................................................................................................AGCGATGGAGGCTTCGGGGA............................................................................................................................................ 201.000.00---------------------------------------------------------------------------------------------1.00---------
..................................................................................................................................................................................................ACGGGAGGATAAGAAGAAAGTGCAAT.............................................................. 2611.001.00-------------1.00-----------------------------------------------------------------------------------------
..........................................................................................................................AGCGATGGAGGCTTCGGGG............................................................................................................................................. 191.000.00-----------------------------------------------------------------------------------------1.00-------------
..................................................................................................................................................................................................AGGATAAGAAGAAAGTGCAAT................................................................... 2111.001.00--------------1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACCTAAAGGAGGAGACGGGAG................................................ 2111.001.00--------------------------------------------------------------------------------1.00----------------------
......................................................................................................................................................................................................GACGGGAGGATAAGAAGAAAGTG............................................................. 2311.001.00-------------------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................ACGGGAGGATAAGAAGAA.............................................................. 1811.001.00------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GACGGGAGGATAAGAAGAAA............................................................. 2011.001.00----------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................CTTTCTTCTTATCCTCGCA............................................................... 191.000.00----------------------------------------------------------------------------------------1.00--------------
....................................................................................TTAAGCGGCTTGGGAGAGGGCGAGG............................................................................................................................................................................. 251.000.00----------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................................................................GAGGATAAGAAGAAAGTGCAAT.................................................................. 2211.001.00------------------------------------------------------------------------------------1.00------------------
.....................................................................................................................................................................................................CGGGAGGATAAGAAGAAAGTGC............................................................... 2211.001.00------------------------------------------------------------------------------1.00------------------------
..................................................................................................................................................................................................GACGGGAGGATAAGAAGAAAGTGCAAT............................................................. 2711.001.00--------------------------------------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................ACGGGAGGATAAGAAGA.............................................................. 1711.001.00------------------------------------------------------------------------------------------1.00------------
.........................TCCCTGCAGGGCTGAAGC............................................................................................................................................................................................................................................... 1820.500.50-------------------------------------------------------------------------------------------------0.50-----
...........................................................................................CCTGCCCTCTCCCAAGC.............................................................................................................................................................................. 1730.330.33-------------------------------------0.33-----------------------------------------------------------------