ID: uc011kfz.1_intron_24_0_chr7_75216152_r.3p
GENE: (2)
chr7:75216102-75216351-


(1)
AGO2.ip
(1)
AGO3.ip
(1)
B-CELL
(4)
BRAIN
(6)
BREAST
(16)
CELL-LINE
(3)
HEART
(3)
HELA
(2)
OTHER
(6)
SKIN

Sense strand
AGGAGGTGGAGGCTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCTAGACCCCATCTCTAAATAAATAAAATAAAGGGGAGAAAACAAAGAAGATAGATTCTTTACCAGAGAATTCCTGGCTGCAGATCTCTTGACTGTTATGTTCTTGTTGTTGACTCTGTTTCCCCTCCTCTTCCTAAAAGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACT
............................................................................................................(((((((.((...((..((((((........((((.((....))))))...))))))...)).)).))))))).....................................................................
....................................................................................................101..................................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR390723(GSM850202)
total small RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................AGAAGATAGATTCTTTA................................................................................................................................17151.0051.0051.00------------------------------------------
.........................................................................................................AGAAGATAGATTCTTTAG...............................................................................................................................18111.0051.006.00--5.00---------------------------------------
.........................................................................................................AGAAGATAGATTCTTTAGT..............................................................................................................................1918.0051.006.00----2.00-------------------------------------
...AGGTGGAGGCTGCAGTGAGCCGAGATCACACG.......................................................................................................................................................................................................................322.000.00--2.00----------------------------------------
.....................................................................................................................................................................................................AAGGGCCACCTGAGCGAGGGGTATGGC..........................2711.001.00-----------------1.00-------------------------
.............................................................................................................................GAGAATTCCTGGCTGCCGA..........................................................................................................191.000.00----1.00--------------------------------------
.......................................................................................................AAAGAAGATAGATTCTTGAT...............................................................................................................................201.000.00-------------------------1.00-----------------
...................................................................................................................................................................TTGTTGTTGACTCTGCCAG....................................................................191.000.00--1.00----------------------------------------
................................................CTGGGCAACAGAGCTAGACGTAT...................................................................................................................................................................................231.000.00----------1.00--------------------------------
...........................................................................................................................................................................................................................ATGGCCAGCTGTGCAGCA.............1811.001.00-----------1.00-------------------------------
......TGGAGGCTGCAGTGAGCCGAGAAGGG..........................................................................................................................................................................................................................261.000.00--1.00----------------------------------------
.......................................................................TCTCTAAATAAATAAAATACAAT............................................................................................................................................................231.000.00--------------------1.00----------------------
.........................AGATCATGCCACTGCACTCCAGCCTGGGCACGC................................................................................................................................................................................................331.000.00-1.00-----------------------------------------
...AGGTGGAGGCTGCAGTGAGCCGCACC.............................................................................................................................................................................................................................261.000.00-1.00-----------------------------------------
.......................CGAGATCATGCCACTGCACTCA.............................................................................................................................................................................................................221.000.00------------------1.00------------------------
..................................................................................................AAAACAAAGAAGATAGAACT....................................................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................................................................................................AGGGGTATGGCCAGCTGTG..................1911.001.00-------------------1.00-----------------------
.........................................................................................................AGAAGATAGATTCTTT.................................................................................................................................1651.001.001.00------------------------------------------
...............................................................................................................................................................GTTCTTGTTGTTGAC............................................................................1580.380.38-----------------------------------0.25-----0.12-
...............................................................................................................................................................GTTCTTGTTGTTGACAAA.........................................................................1880.250.38-------------------------------------0.120.12----
...............................................................................................................................................................GTTCTTGTTGTTGACGA..........................................................................1780.250.38----------------------------------------0.12-0.12
...............................................................................................................................................................GTTCTTGTTGTTGACCACA........................................................................1980.250.38----------------------------------0.25--------
...............................................................................................................................................................GTTCTTGTTGTTGACATAC........................................................................1980.120.38---------------------------------------0.12---
...............................................................................................................................................................GTTCTTGTTGTTGACCCTG........................................................................1980.120.38------------------------------------0.12------
...............................................................................................................................................................GTTCTTGTTGTTGACATC.........................................................................1880.120.38-----------0.12-------------------------------

Antisense strand
AGGAGGTGGAGGCTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCTAGACCCCATCTCTAAATAAATAAAATAAAGGGGAGAAAACAAAGAAGATAGATTCTTTACCAGAGAATTCCTGGCTGCAGATCTCTTGACTGTTATGTTCTTGTTGTTGACTCTGTTTCCCCTCCTCTTCCTAAAAGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACT
............................................................................................................(((((((.((...((..((((((........((((.((....))))))...))))))...)).)).))))))).....................................................................
....................................................................................................101..................................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR390723(GSM850202)
total small RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................TAAAGAATCTATCTTCTTT................................................................................................................................ 1915.005.002.00----2.00--1.00----------------------------------
...........................................................................TAAATAAATAAAATAAAGCG........................................................................................................................................................... 202.000.00------2.00------------------------------------
.GGAGGTGGAGGCTGCAGTGAGCCGAGATGGGT......................................................................................................................................................................................................................... 322.000.00-2.00-----------------------------------------
.......................................................................................................AAAGAATCTATCTTCTTT................................................................................................................................. 1812.002.001.00-------1.00----------------------------------
............................................................................AAATAAATAAAATAAAGGGTTG........................................................................................................................................................ 222.000.00-------1.00----------------------1.00------------
..........................................................................................AAGGGGAGAAAACAAGCAG............................................................................................................................................. 192.000.00-2.00-----------------------------------------
..........GGCTGCAGTGAGCCGAGATCATGCCACTG................................................................................................................................................................................................................... 292.000.00-2.00-----------------------------------------
.......................................................................................................................................................................................................................................GCAGCATCTACCTGATGTG 191.000.00----1.00--------------------------------------
...........................................................................TAAATAAATAAAATAAAGGGCG......................................................................................................................................................... 221.000.00--------------------------------1.00----------
....GGTGGAGGCTGCAGTGAGCCGAGATCCTG......................................................................................................................................................................................................................... 291.000.00-1.00-----------------------------------------
..............GCAGTGAGCCGAGATCATGCCACGGA.................................................................................................................................................................................................................. 261.000.00----------1.00--------------------------------
...........................................................................TAAATAAATAAAATAAAGGCG.......................................................................................................................................................... 211.000.00------1.00------------------------------------
............CTGCAGTGAGCCGAGATCATGTAA...................................................................................................................................................................................................................... 241.000.00---------------------------1.00---------------
...................GAGCCGAGATCATGCCACTCCC................................................................................................................................................................................................................. 221.000.00--------------------------1.00----------------
...................GAGCCGAGATCATGCCACCGCA................................................................................................................................................................................................................. 221.000.00----1.00--------------------------------------
.........................................CTCCAGCCTGGGCAACAGAGCTAGGG....................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------
..........GGCTGCAGTGAGCCGAGATCACG......................................................................................................................................................................................................................... 231.000.00-1.00-----------------------------------------
.................GTGAGCCGAGATCATGCCACTGGAG................................................................................................................................................................................................................ 251.000.00----------------------------1.00--------------
...................GAGCCGAGATCATGCCACTGC.................................................................................................................................................................................................................. 211.000.00---------1.00---------------------------------
...............................................CCTGGGCAACAGAGCTGCTC....................................................................................................................................................................................... 201.000.00----------------1.00--------------------------
..............................................GCCTGGGCAACAGAGCTAGGAG...................................................................................................................................................................................... 221.000.00-1.00-----------------------------------------
....GGTGGAGGCTGCAGTGAGCCGAGACCCG.......................................................................................................................................................................................................................... 281.000.00--1.00----------------------------------------
........................................................................................................AAAGAATCTATCTTCTT................................................................................................................................. 1731.001.000.67-------0.33----------------------------------
..................TGAGCCGAGATCATGCCACTGCACGTGA............................................................................................................................................................................................................ 281.000.00-------------------------------1.00-----------
...................................................................................................................................................................................TTCCCCTCCTCTTCCTTCGA................................................... 201.000.00----------------------1.00--------------------
...................GAGCCGAGATCATGCCACCGTT................................................................................................................................................................................................................. 221.000.00----1.00--------------------------------------
....GGTGGAGGCTGCAGTGAGCCGAGAAAG........................................................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------
...................GAGCCGAGATCATGCCACCCCG................................................................................................................................................................................................................. 221.000.00------------1.00------------------------------
.......................................CACTCCAGCCTGGGCAACAGAGCTGGCT....................................................................................................................................................................................... 281.000.00-1.00-----------------------------------------
...........................................................................TAAATAAATAAAATAAAGCTAT......................................................................................................................................................... 221.000.00---------------------------------1.00---------
.........................................CTCCAGCCTGGGCAACAGAGCTCGTC....................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------
....GGTGGAGGCTGCAGTGAGCCGAGATATCC......................................................................................................................................................................................................................... 291.000.00--1.00----------------------------------------
......................CCGAGATCATGCCACTGCACTCCAGCAA........................................................................................................................................................................................................ 281.000.00-------------1.00-----------------------------
.GGAGGTGGAGGCTGCAGTGAGCCGAGATGGTT......................................................................................................................................................................................................................... 321.000.00-1.00-----------------------------------------
......................................GCACTCCAGCCTGGGCAACAGAGCTGGCG....................................................................................................................................................................................... 291.000.00-1.00-----------------------------------------
.........................................CTCCAGCCTGGGCAACAGAGCTCGGG....................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------
..................TGAGCCGAGATCATGCCACTGAA................................................................................................................................................................................................................. 231.000.00--------------1.00----------------------------
..................TGAGCCGAGATCATGCCACGAA.................................................................................................................................................................................................................. 221.000.00---------------------1.00---------------------
........................................................................................................................................................................................................GGCCACCTGAGCGAGACT................................ 181.000.00-----------------------1.00-------------------
............CTGCAGTGAGCCGAGATCATGAAA...................................................................................................................................................................................................................... 241.000.00---------1.00---------------------------------
............................................................................AAATAAATAAAATAAAGGCATT........................................................................................................................................................ 221.000.00-------1.00-----------------------------------
....GGTGGAGGCTGCAGTGAGCCGAGATCCAG......................................................................................................................................................................................................................... 291.000.00-1.00-----------------------------------------
....GGTGGAGGCTGCAGTGAGCCGAGATAAGA......................................................................................................................................................................................................................... 291.000.00--1.00----------------------------------------
..................TGAGCCGAGATCATGCCGAA.................................................................................................................................................................................................................... 201.000.00------------------------1.00------------------
....GGTGGAGGCTGCAGTGAGCCGAGATCCCG......................................................................................................................................................................................................................... 291.000.00-1.00-----------------------------------------
........................................................................................................TAAAGAATCTATCTTCTT................................................................................................................................ 1811.001.001.00------------------------------------------
.............................CATGCCACTGCACTCCAGCCTCGGC.................................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------
...AGGTGGAGGCTGCAGTGAGCCGAGAGGGT.......................................................................................................................................................................................................................... 291.000.00--1.00----------------------------------------
....................................................GCAACAGAGCTAGACTCTG................................................................................................................................................................................... 191.000.00-----------------------------1.00-------------
................AGTGAGCCGAGATCATGCCATCGG.................................................................................................................................................................................................................. 241.000.00---------------1.00---------------------------
...................GAGCCGAGATCATGCCACTGCACTCCAGCCCG....................................................................................................................................................................................................... 321.000.00-1.00-----------------------------------------
.............................................................................AATAAATAAAATAAAGGCTA......................................................................................................................................................... 201.000.00-------1.00-----------------------------------
.............................CATGCCACTGCACTCCAGCCTCCCC.................................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------
.......GGAGGCTGCAGTGAGCCGAGATCGCG......................................................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------