ID: uc011kdp.1_intron_0_0_chr7_64254950_f.5p
GENE: (1)
chr7:64254900-64255149+


(5)
B-CELL 		(3)
BRAIN 		(11)
BREAST 		(14)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(21)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTGGGAGATTCACAGCTAAGACGCCAGGATCCCCCGGAAGCCTAGAAATGGTGAGAGTGCTGGGTCCGACATCCCGAGAGAGGGGGAGGGAGCTGGTTGGAACCGGTCGGAAGTGGCTGTGGCAGTACTCGGGTCTTCCCGCAGTCGGCTGCAAAATCCGCGGCCCCGAGTTCTTGGCACAGCTCGGCCCTCAGTCCCCTTAAGCCATAGCATGGCAGCTGGGCTGACAGCCGGAACCAGGCGTCCTGTC
..........................................................((((..((((((.((((......))))..((...((....))..)).))))))..))))....((((((((((((....)))).)))..)))))..................................................................................................
.........................................................58.............................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189787TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577579(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.................................................................................................................................CGGGTCTTCCCGCAGTCGGG.....................................................................................................20112.008.00--1.002.00-1.00-1.00-------1.00---1.00-------1.00-------1.00--------------1.001.00-1.00------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGG......................................................................................................1918.008.00---1.002.00----1.00---1.00------------1.00--1.00------------1.00-----------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGGTT...................................................................................................2215.008.00---1.00-1.001.00----------------1.00----1.00-------------------------------------------
..................................................................................................................................GGGTCTTCCCGCAGTCGG......................................................................................................1814.004.00--2.00-----1.00------------------------------------1.00--------------------------
..................................................................................................................................GGGTCTTCCCGCAGTCGGG.....................................................................................................1913.004.00------1.00-1.00-1.00-------------------------------------------------------------
..................................................................................................................................GGGTCTTCCCGCAGTCGGGT....................................................................................................2013.004.00--1.00---1.00---1.00-------------------------------------------------------------
................................CCCGGAAGCCTAGAAATGG.......................................................................................................................................................................................................1962.172.17----------------0.83-1.17-------------------------------------------------0.17---
.................................................................................................................................CGGGTCTTCCCGCAGTCGGGT....................................................................................................2112.008.00---------------1.00-----------------------1.00--------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGGGT...................................................................................................2212.008.00-----1.00----------------------------------1.00-------------------------------
.............................................................................................................................................................................................................................GGCTGACAGCCGGAACCAGGCG.......2211.001.00--------------1.00---------------------------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGTTT...................................................................................................2211.008.00-------------------------------------------------------1.00----------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGTGT....................................................................................................211.000.00-------1.00----------------------------------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCTGG.....................................................................................................201.000.00-------------------------------------1.00----------------------------------
..............................................................GGTCCGACATCCCGACGAT.........................................................................................................................................................................191.000.00--------------------------------------1.00---------------------------------
..................................CGGAAGCCTAGAAATGCT......................................................................................................................................................................................................181.000.00------------------------------------------------------1.00-----------------
....................................................................................GGAGGGAGCTGGTTGTTTA...................................................................................................................................................191.000.00-----------1.00------------------------------------------------------------
.............................................................................................................................................................................................................CATAGCATGGCAGCTCGGT..........................191.000.00----------------------1.00-------------------------------------------------
....................................................................................GGAGGGAGCTGGTTGTA.....................................................................................................................................................171.000.00-----------------------------------------1.00------------------------------
..................................................................................GGGGAGGGAGCTGGTTGGAACC..................................................................................................................................................2211.001.00----------------------------------1.00-------------------------------------
........................................................................................................................................................................................................................AGCTGGGCTGACAGCATG................181.000.00-----------------------------------------------1.00------------------------
....................................................................................................................................................CTGCAAAATCCGCGGCCCCGAGTT..............................................................................2411.001.00------------------------------------1.00-----------------------------------
.........................AGGATCCCCCGGAAGCCT...............................................................................................................................................................................................................1811.001.00------------------------1.00-----------------------------------------------
..................................................................................................................................GGGTCTTCCCGCAGTCGGGTT...................................................................................................2111.004.00------------------------------1.00-----------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGAGTG..................................................................................................2311.008.00--1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................GCAGCTGGGCTGACAGCGCAA...............211.000.00-1.00----------------------------------------------------------------------
................................................................................AGGGGGAGGGAGCTGGTATTT.....................................................................................................................................................211.000.00------------------------------------------------1.00-----------------------
.........................................................................................................GTCGGAAGTGGCTGTGGCAGTAC..........................................................................................................................2311.001.00-------------------------------------------------1.00----------------------
...................................GGAAGCCTAGAAATGGCGCT...................................................................................................................................................................................................201.000.00--------------------------------1.00---------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCTC......................................................................................................191.000.00----1.00-------------------------------------------------------------------
................................CCCGGAAGCCTAGAAAAGG.......................................................................................................................................................................................................191.000.00----------------1.00-------------------------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGTGA...................................................................................................2211.008.00---------1.00--------------------------------------------------------------
................................................................................................................................TCGGGTCTTCCCGCAGTCGGA.....................................................................................................211.000.00-------------1.00----------------------------------------------------------
..........................................................................................................................................................................................................................CTGGGCTGACAGCCGGAACCAGGCGT......2611.001.00--------------------------------------------1.00---------------------------
.....................................................................................................ACCGGTCGGAAGTGGCTGGGGT...............................................................................................................................221.000.00--------------1.00---------------------------------------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGT.....................................................................................................2011.008.00---1.00--------------------------------------------------------------------
....................................................................................GGAGGGAGCTGGTTGACCT...................................................................................................................................................191.000.00-------------------------------1.00----------------------------------------
................................................................................AGGGGGAGGGAGCTGAC.........................................................................................................................................................171.000.00-------------------------------------------1.00----------------------------
.................................................................................................................................CGGGTCTTCCCGCAGTCGGGA....................................................................................................2111.008.00---------------------1.00--------------------------------------------------
.........................................................................................................................................................................................................AAGCCATAGCATGGCAGCTGGGCTGACAGC...................3011.001.00--------------------1.00---------------------------------------------------
...............................................................................................GTTGGAACCGGTCGGAAGTG.......................................................................................................................................2020.500.50---------------------------------------------------------0.50--------------
...............................................ATGGTGAGAGTGCTGGGTCCGACATCCCGAG............................................................................................................................................................................3120.500.50----------------------------------------------------------0.50-------------
.........................................................................................................................................................................................................................GCTGGGCTGACAGCCGGA...............1820.500.50--------------------------------------------------------0.50---------------
..........................................................................................................................................................................................................................CTGGGCTGACAGCCGGA...............1720.500.50-----------------------------------------------------------0.50------------
.....................................................................................................................................TCTTCCCGCAGTCGG......................................................................................................1550.400.40-----------------0.20-------------------------------------------------0.20----
.......................................GCCTAGAAATGGTGAGAGTGCTGG...........................................................................................................................................................................................2430.330.33--------------------------------------------------------------0.33---------
.........TCACAGCTAAGACGC..................................................................................................................................................................................................................................1530.330.33------------------------------------------------------------0.33-----------
.....................CGCCAGGATCCCCCG......................................................................................................................................................................................................................1530.330.33-------------------------------------------------------------0.33----------
..........................................................................................................TCGGAAGTGGCTGTGG................................................................................................................................1640.250.25----------------------------------------------------------------0.25-------
.....................................................................................................................................TCTTCCCGCAGTCGGGAC...................................................................................................1850.200.40-----------------------------------------------------------------0.20------
................................CCCGGAAGCCTAGAAATGGTGAG...................................................................................................................................................................................................2350.200.20------------------------------------------------------------------0.20-----
..................................................GTGAGAGTGCTGGGTCC.......................................................................................................................................................................................1750.200.20-------0.20----------------------------------------------------------------
...........................................................................................................CGGAAGTGGCTGTGGC...............................................................................................................................1660.170.17-----------------------------------------------------------------------0.17
.................................CCGGAAGCCTAGAAATGG.......................................................................................................................................................................................................1860.170.17----------------------------------------------------------------------0.17-
...........................................................................................................CGGAAGTGGCTGTGG................................................................................................................................1590.110.11-----------------0.11------------------------------------------------------

Antisense strand
TTGGGAGATTCACAGCTAAGACGCCAGGATCCCCCGGAAGCCTAGAAATGGTGAGAGTGCTGGGTCCGACATCCCGAGAGAGGGGGAGGGAGCTGGTTGGAACCGGTCGGAAGTGGCTGTGGCAGTACTCGGGTCTTCCCGCAGTCGGCTGCAAAATCCGCGGCCCCGAGTTCTTGGCACAGCTCGGCCCTCAGTCCCCTTAAGCCATAGCATGGCAGCTGGGCTGACAGCCGGAACCAGGCGTCCTGTC
..........................................................((((..((((((.((((......))))..((...((....))..)).))))))..))))....((((((((((((....)))).)))..)))))..................................................................................................
.........................................................58.............................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189787TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577579(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...........ACAGCTAAGACGCCATTGT............................................................................................................................................................................................................................ 197.000.006.001.00----------------------------------------------------------------------
...........ACAGCTAAGACGCCATGTT............................................................................................................................................................................................................................ 194.000.004.00-----------------------------------------------------------------------
..............................................................................................................................................................................................ATGGCTTAAGGGGACTGA.......................................... 1812.002.00------------2.00-----------------------------------------------------------
..........CACAGCTAAGACGCCATGT............................................................................................................................................................................................................................. 192.000.001.001.00----------------------------------------------------------------------
...........ACAGCTAAGACGCCATTGG............................................................................................................................................................................................................................ 191.000.001.00-----------------------------------------------------------------------
..........CACAGCTAAGACGCCATTTT............................................................................................................................................................................................................................ 201.000.001.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................................GGTTCCGGCTGTCAGCCCA............ 1911.001.00-----------------1.00------------------------------------------------------
..............................................................................................................................................................................................TATGGCTTAAGGGGACTGA......................................... 1911.001.00----------------------------------------------1.00-------------------------
................................................................................................................GTGGCTGTGGCAGTACTAACA..................................................................................................................... 211.000.00-----------1.00------------------------------------------------------------
........................................................................................................................................................................................CGGCCCTCAGTCCCCTTCGC.............................................. 201.000.00----1.00-------------------------------------------------------------------
.........................................................................................................................................................................................GCTTAAGGGGACTGAGGGCC............................................. 2011.001.00-------------------------1.00----------------------------------------------
...........ACAGCTAAGACGCCATTGC............................................................................................................................................................................................................................ 191.000.00-1.00----------------------------------------------------------------------
..........CACAGCTAAGACGCCATGTT............................................................................................................................................................................................................................ 201.000.001.00-----------------------------------------------------------------------
...........ACAGCTAAGACGCCAT............................................................................................................................................................................................................................... 161.000.00-1.00----------------------------------------------------------------------
.....................................................................................................................................................................................GCTCGGCCCTCAGTCCCG................................................... 181.000.00---------------------------------1.00--------------------------------------
...........ACAGCTAAGACGCCACGTT............................................................................................................................................................................................................................ 191.000.00-1.00----------------------------------------------------------------------
................................................................................................................................................................CGGCCCCGAGTTCTTA.......................................................................... 161.000.00----------------------------------------------------1.00-------------------
..........CACAGCTAAGACGCCACGTT............................................................................................................................................................................................................................ 201.000.00-1.00----------------------------------------------------------------------
.....................................................................................................................................................................................AAGGGGACTGAGGGCCGAGC................................................. 2040.500.50----0.50-------------------------------------------------------------------
.....................................................GGATGTCGGACCCAGCACTCT................................................................................................................................................................................ 2140.250.25---------------------------------------------------------------0.25--------
...................................................................................................................................................................................GGGACTGAGGGCCGAGCTG.................................................... 1960.170.17---------------------------------------------------------------------0.17--