ID: uc011kdc.1_intron_6_0_chr7_56154713_r.5p
GENE: PHKG1(3)
chr7:56155113-56155362-


(6)
B-CELL
(3)
BRAIN
(14)
BREAST
(16)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(2)
OTHER
(5)
SKIN

Sense strand
TGCGGGAGCTGCGAGAAGCCACGCTGAAGGAGGTGGACATCCTGCGCAAGGTCTCAGGGCACCCCAACATCAGTGAGTGATGGCCCCAAGCCACACGGCAGGGTGCCCCCCTGTGATTCTGCCCTGACAGCCCAAGCCAGGGAGTGTGGCCCCACCGCACAGCCAACTAGAACCACCCAGGCTCAAGGCTCCCAGCTCCACCCTCACTGCTCTGATAGAAGGGGTCCCAGGCAGGGATGGATGCAGGCAG
........................................................((((.......(((((.....)))))))))...(((((((.((((((.....)))))).......(((((...((....))))))).)))))))....................................................................................................
..................................................51......................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577453(Rovira)
total RNA. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................................................................................AAGCCAGGGAGTGTGGGT...................................................................................................18126.000.0020.0018.0011.0010.0011.009.0010.007.002.003.002.002.002.002.00-1.00---2.00-1.00---1.00-1.00-1.00-1.00-1.001.00-1.001.001.001.001.00-1.00--1.00---
......................................................................................................................................AGCCAGGGAGTGTGGGT...................................................................................................1748.000.0012.006.007.006.004.004.001.001.002.001.001.00-----1.00-------------1.00-------------1.00----
.....................................................................................................................................AAGCCAGGGAGTGTGGGG...................................................................................................185.000.002.00-1.001.00--1.00------------------------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGAT...................................................................................................184.000.001.001.00--1.00-------1.00------------------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGGC...................................................................................................183.000.00--1.00--------1.00----1.00--------------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGCT...................................................................................................182.000.00-2.00-----------------------------------------------
...................CACGCTGAAGGAGGTGGACATCCTGCGCAAG........................................................................................................................................................................................................3111.001.00----------------------1.00--------------------------
...................................................TCTCAGGGCACCCCAACACCAG.................................................................................................................................................................................221.000.00------------------1.00------------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGGTTC.................................................................................................201.000.00--------------------------1.00----------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGTT...................................................................................................181.000.00-----------------------1.00-------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGGG....................................................................................................171.000.00----------------------------1.00--------------------
......................................................................................................................................AGCCAGGGAGTGTGGGTTC.................................................................................................191.000.00-------------------------------------------1.00-----
.....................CGCTGAAGGAGGTGGACATC.................................................................................................................................................................................................................2011.001.00---------------1.00---------------------------------
..............................................................................................ACGGCAGGGTGCCCCCGGCC........................................................................................................................................201.000.00------------------1.00------------------------------
.........................................................................................................CCCCCCTGTGATTCTGATAA.............................................................................................................................201.000.00-----------------1.00-------------------------------
.................GCCACGCTGAAGGAGGT........................................................................................................................................................................................................................1711.001.00------------------------1.00------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGTGT...................................................................................................181.000.00-1.00-----------------------------------------------
......................................................................................................................................AGCCAGGGAGTGTGGCG...................................................................................................171.000.00--1.00----------------------------------------------
...................................................................................................................................CCAAGCCAGGGAGTGTGCGT...................................................................................................201.000.001.00------------------------------------------------
.....................................................................................................................................AAGCCAGGGAGTGTGCGG...................................................................................................181.000.00-1.00-----------------------------------------------
..CGGGAGCTGCGAGAATTA......................................................................................................................................................................................................................................181.000.00--------------------1.00----------------------------
.GCGGGAGCTGCGAGAAGCCACGCTGAAGGAGGT........................................................................................................................................................................................................................3311.001.00-----------------1.00-------------------------------
.......................CTGAAGGAGGTGGACTGCG................................................................................................................................................................................................................191.000.00----------------------------------------------1.00--
.....................................................................................................................TCTGCCCTGACAGCCC.....................................................................................................................1630.330.33-----------------------------------------------0.33-
..........................................................................................................................................................................................................................AAGGGGTCCCAGGCAGGG..............1840.250.25--------------0.25----------------------------------
..........................AAGGAGGTGGACATC.................................................................................................................................................................................................................1590.110.11------------------------------------------------0.11

Antisense strand
TGCGGGAGCTGCGAGAAGCCACGCTGAAGGAGGTGGACATCCTGCGCAAGGTCTCAGGGCACCCCAACATCAGTGAGTGATGGCCCCAAGCCACACGGCAGGGTGCCCCCCTGTGATTCTGCCCTGACAGCCCAAGCCAGGGAGTGTGGCCCCACCGCACAGCCAACTAGAACCACCCAGGCTCAAGGCTCCCAGCTCCACCCTCACTGCTCTGATAGAAGGGGTCCCAGGCAGGGATGGATGCAGGCAG
........................................................((((.......(((((.....)))))))))...(((((((.((((((.....)))))).......(((((...((....))))))).)))))))....................................................................................................
..................................................51......................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577453(Rovira)
total RNA. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
........................................................................................................................................................AGTTGGCTGTGCGGTG.................................................................................. 1611.001.00--------------1.00----------------------------------
............................................................................GTGATGGCCCCAAGCGGA............................................................................................................................................................ 181.000.00-----------------------------------1.00-------------
.........................................................................................................................................................................................AGGCTCCCAGCTCCACGC............................................... 181.000.00-----------------------------------------1.00-------
.........................................................................................................................................................................................AGGCTCCCAGCTCCAGAG............................................... 181.000.00--------------1.00----------------------------------
................................................................................................................GTGATTCTGCCCTGACGTG....................................................................................................................... 191.000.00--------------------------------1.00----------------
...........................................................................................................................CTGGCTTGGGCTGTCAG.............................................................................................................. 1730.330.33-------------0.33-----------------------------------
..............................................................................................................................................................GTTCTAGTTGGCTGT............................................................................. 1570.140.14--------------------0.14----------------------------