ID: uc011kbj.1_intron_5_0_chr7_43950452_r.3p
GENE: (1)
chr7:43950402-43950651-


(1)
B-CELL
(9)
CELL-LINE
(1)
HEART
(1)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
TATTATTGAAAGTGGGGTATTGAAGTTTCCAACTTTTATTGTAGAAGTCTGTATTTTTTCTCTTTAATTCTGTCAATGTTAGCTTCATATTTTTTGGGGATCTTTTGTTTGGTGCATACATGTTTATCATTGTTATGTCTTCTTAGTGAATTGACTCTTATCAATATGTAATGTTCTTTTTATTTATTTATTTTTATGAGAAAGAGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGAAATCTTGG
.....................................................................................((((((...((((..((.((..((.((.(((((((((.....))).)).))))...)).))..))..))..))))..))))))..................................................................................
.....................................................................................86................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................TTCTTTTTATTTATTTATTTTTATTG...................................................2614.000.005.00-6.00-3.00------------
..............................................................................................................................................................................TCTTTTTATTTATTTATTTTTATTG...................................................2512.000.006.00-6.00--------------
...............................................................................................................................................................................CTTTTTATTTATTTATTTTCAG.....................................................225.000.003.00---2.00------------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAGTGGTGACACC....283.000.00-1.00-2.00-------------
....................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGGCG............262.000.00-1.00-1.00-------------
.................................................................................................................................................................................TTTTATTTATTTATTTTTACCAG..................................................232.000.001.00---1.00------------
...............................................................................................................................................................................CTTTTTATTTATTTATCTTC.......................................................201.000.00--------------1.00--
..........................................................................................TTTTTGGGGATCTTTTGGAC............................................................................................................................................201.000.00--------1.00--------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAGTGGTGAAGCCA...291.000.00---1.00-------------
..............................................................................................................................................................................TCTTTTTATTTATTTATTGGG.......................................................211.000.00----1.00------------
....................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGAC.............251.000.00---1.00-------------
..............................................................................................................................................................................TCTTTTTATTTATTTATTTCG.......................................................211.000.00-------1.00---------
......................................................................................ATATTTTTTGGGGATCTTTTGTTTGGTGC.......................................................................................................................................2911.001.00-1.00---------------
..............................................................................................................................................................................TCTTTTTATTTATTTATTTTTCTGG...................................................251.000.00---1.00-------------
...............................................................................................................................................................................CTTTTTATTTATTTATTTTTACAG...................................................241.000.00-------1.00---------
...............................................................................................................................................................................CTTTTTATTTATTTATTTTTCG.....................................................221.000.00--1.00--------------
...........................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGTGAAGG.....261.000.00------1.00----------
..............................................................................................................................................................................TCTTTTTATTTATTTATTTTTATTTTG.................................................271.000.001.00----------------
..............................................................................................................................................................................TCTTTTTATTTATTTATTTTCAA.....................................................231.000.00--1.00--------------
.................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGG................251.000.00-1.00---------------
............................................................................................................................................................................................................AGTCTTGCTGTGTCACCCAG..........................2001.001.00------------1.00----
.............................................................................................................................................................................TTCTTTTTATTTATTTATTTTTATC....................................................251.000.00-1.00---------------
................................CTTTTATTGTAGAAGTCTGTATTTT.................................................................................................................................................................................................2511.001.00-----------1.00-----
.................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGAC...............261.000.00-1.00---------------
...........................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGTGAAGAA....271.000.00------1.00----------
...............................................................................................................................................................................CTTTTTATTTATTTATTGTTG......................................................211.000.00-----1.00-----------
..............................................................................................................................................................................................................TCTTGCTGTGTCACCCAGGCGGAG....................241.000.00-1.00---------------
.................................TTTTATTGTAGAAGTCTGT......................................................................................................................................................................................................1911.001.00-------------1.00---
.............................................................................................................................................................................TTCTTTTTATTTATTTATTTTCTG.....................................................241.000.00----1.00------------
............................................................................................................................................................................................................................CCAGGCTGGAGTGCAGTGGTGAACA.....251.000.00---1.00-------------
.................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGCC...............261.000.00-1.00---------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGTGAAATA....241.000.00--------1.00--------
..........................................................................................................................................................................ATGTTCTTTTTATTTATTTATTTTT.......................................................2511.001.00-1.00---------------
.............................................................................................................................................................................TTCTTTTTATTTATTTATTTTTCG.....................................................241.000.001.00----------------
.............................................................................................................................................................................TTCTTTTTATTTATTTAACAT........................................................211.000.001.00----------------
...............................................................................................................................................................................CTTTTTATTTATTTATTTTCG......................................................211.000.00-----1.00-----------
.............................................................................................................................................................................TTCTTTTTATTTATTTATTATG.......................................................221.000.001.00----------------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAGTGGTGACCTC....281.000.00---1.00-------------
.......................................................................................................................................TGTCTTCTTAGTGAATTGA................................................................................................1940.250.25---------------0.25-
.......................................TGTAGAAGTCTGTAT....................................................................................................................................................................................................1570.140.14----------------0.14

Antisense strand
TATTATTGAAAGTGGGGTATTGAAGTTTCCAACTTTTATTGTAGAAGTCTGTATTTTTTCTCTTTAATTCTGTCAATGTTAGCTTCATATTTTTTGGGGATCTTTTGTTTGGTGCATACATGTTTATCATTGTTATGTCTTCTTAGTGAATTGACTCTTATCAATATGTAATGTTCTTTTTATTTATTTATTTTTATGAGAAAGAGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGAAATCTTGG
.....................................................................................((((((...((((..((.((..((.((.(((((((((.....))).)).))))...)).))..))..))..))))..))))))..................................................................................
.....................................................................................86................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGAAATGGGC. 263.000.00-3.00---------------
.....................................................................................................................................................................................................GAGAAAGAGTCTTGCTGTGTACC.............................. 232.000.00---------2.00-------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGAGGGC.... 232.000.00---2.00-------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGAGTGC.... 231.000.00-1.00---------------
...............................................................................................................................................................................TCTCATAAAAATAAATAAATAAAAAG................................................. 2611.001.00-----1.00-----------
............................................................................................................................................................................................................ACTGCACTCCAGCCTGGGTGACACAGCAAGACT............. 3301.001.00----------1.00------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGAGAGC.... 231.000.00-1.00---------------
...............................................................................................................................................................................CTCATAAAAATAAATAAATAAAAAG.................................................. 2511.001.00-----1.00-----------
...........................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGTGAGACC.... 271.000.00------1.00----------