ID: uc011kak.1_intron_4_0_chr7_33028265_f.5p
GENE: FKBP9(5)
chr7:33028215-33028464+


(1)
AGO2.ip
(4)
BRAIN
(2)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
HEART
(5)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
GCGAAGGATTGTGGTCCCGCCTCACCTGGGGTATGGAGAGGAAGGAAGAGGTGAGCATCAGCATCACCTGCCTTCCTCACTAGCTGTGGCTGCTTCCACATTGCTTGAAACAGGGCTTCTTTTTCTTTTTCTTCTTTCTTTTTGAGATAGGGTCTCCCTCTGTTGAACAGGCTGGAAAGTGTAGTGTGTGATCATCGTGTACTATGGCCTGGAACTCTTGGCCTCAAGTGATCCTCTTGCCTCAGCCTTC
...........................................................................................................................((.....((.((((((.((((.(((((((.....)))))))...))))..))))))...)).....))...........................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR343335SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
...............................................................................................................................TTTCTTCTTTCTTTTTAAGT.......................................................................................................204.000.00----4.00------------------------------
............................................................................................................................CTTTTTCTTCTTTCTTACAG..........................................................................................................203.000.00--3.00--------------------------------
........................................................................................................................TTTTCTTTTTCTTCTTTCTTTTTTTG........................................................................................................263.000.003.00----------------------------------
.............................................................................................................................TTTTTCTTCTTTCTTTTCCAG........................................................................................................213.000.00-1.002.00--------------------------------
...................................................................................................................CTTCTTTTTCTTTTTCTTCTTTCTTCTTG..........................................................................................................292.000.00-2.00---------------------------------
....................................................................................................................TTCTTTTTCTTTTTCTTCTTTCTTTTTTCG........................................................................................................302.000.00--2.00--------------------------------
......................................................................................................................CTTTTTCTTTTTCTTCTTTCTTTTTTTG........................................................................................................282.000.00-1.001.00--------------------------------
....................................................................................................................TTCTTTTTCTTTTTCTTCTTTCTTTTTTTG........................................................................................................302.000.00-2.00---------------------------------
..................................................................................................................................................................................................................................AGTGATCCTCTTGCCTCAGCCCGT242.000.00---2.00-------------------------------
.....................................GAGGAAGGAAGAGGTGAGCA.................................................................................................................................................................................................2021.501.50--------1.50--------------------------
.CGAAGGATTGTGGTCCCGCCTCAC.................................................................................................................................................................................................................................2411.001.00----------------------1.00------------
............................................................................................................................CTTTTTCTTCTTTCTTTTTCTG........................................................................................................221.000.001.00----------------------------------
................................................................................................................................................................TGTTGAACAGGCTGGAAAGTG.....................................................................2111.001.00---------1.00-------------------------
...................................................................................................................CTTCTTTTTCTTTTTCTTCTAATG...............................................................................................................241.000.00-1.00---------------------------------
....................................AGAGGAAGGAAGAGGTGTATA.................................................................................................................................................................................................211.000.00------------------1.00----------------
...................................................................................................................CTTCTTTTTCTTTTTCTTCTTTCTCTTT...........................................................................................................281.000.001.00----------------------------------
...................................................................................................................CTTCTTTTTCTTTTTCTTCTTTCTTTG............................................................................................................271.000.00-1.00---------------------------------
...................................................................................................................CTTCTTTTTCTTTTTCTTATG..................................................................................................................211.000.00-1.00---------------------------------
...........................................................................................................................................................................CTGGAAAGTGTAGTGTAGGG...........................................................201.000.00---------------1.00-------------------
....................CTCACCTGGGGTATGGTCA...................................................................................................................................................................................................................191.000.00-----1.00-----------------------------
....AGGATTGTGGTCCCGCCTCACCTGGGGTA.........................................................................................................................................................................................................................2911.001.00--------------------1.00--------------
............................................................................................................................CTTTTTCTTCTTTCTTTTTAG.........................................................................................................211.000.00-1.00---------------------------------
....................CTCACCTGGGGTATGACTT...................................................................................................................................................................................................................191.000.00-----1.00-----------------------------
.......................................................................................................................TTTTTCTTTTTCTTCTTTCTTTTTCCC........................................................................................................271.000.001.00----------------------------------
...............................................................................................................AGGGCTTCTTTTTCTTTTTGG......................................................................................................................211.000.00---1.00-------------------------------
............................................................................................................................CTTTTTCTTCTTTCTTAAGT..........................................................................................................201.000.00----1.00------------------------------
........................................................................................................................TTTTCTTTTTCTTCTTTCTTTTTCCC........................................................................................................261.000.001.00----------------------------------
....................................................................................................................TTCTTTTTCTTTTTCTTCAGGC................................................................................................................221.000.001.00----------------------------------
....................................................................................................................TTCTTTTTCTTTTTCTAGCC..................................................................................................................201.000.001.00----------------------------------
....................CTCACCTGGGGTATGAGA....................................................................................................................................................................................................................181.000.00-----1.00-----------------------------
.......................................................................................................................TTTTTCTTTTTCTTCGATT................................................................................................................191.000.00----1.00------------------------------
.................................................................................................................................................................................................................................AAGTGATCCTCTTGCCTCAGCCCCTA261.000.001.00----------------------------------
......................................................................................................................CTTTTTCTTTTTCTTCTTTCTTTTTCTG........................................................................................................281.000.00-1.00---------------------------------
...............................................................................................................AGGGCTTCTTTTTCTTTTGG.......................................................................................................................201.000.00----------------1.00------------------
....AGGATTGTGGTCCCGCCTCACCTGGGGTATGGA.....................................................................................................................................................................................................................3311.001.00------1.00----------------------------
......................................................................................................................CTTTTTCTTTTTCTTCTTTCTTTTTTAAG.......................................................................................................291.000.00-1.00---------------------------------
.........................................................................................................................TTTCTTTTTCTTCTTTCTTTTTTG.........................................................................................................241.000.00-1.00---------------------------------
.....................................................................................................................TCTTTTTCTTTTTCTTCGC..................................................................................................................191.000.001.00----------------------------------
.....................................................................................................................TCTTTTTCTTTTTCTTCTTTCTTTTTCC.........................................................................................................281.000.001.00----------------------------------
.......................................................................................................................TTTTTCTTTTTCTTCTTTCTTTTTCC.........................................................................................................261.000.00---1.00-------------------------------
...........................................................................................................................TCTTTTTCTTCTTTCTTTTTCCC........................................................................................................231.000.00---1.00-------------------------------
........................................................................................................................TTTTCTTTTTCTTCTTTCTTTGCAC.........................................................................................................251.000.001.00----------------------------------
.....................................................................................................................TCTTTTTCTTTTTCTTCTTTCTTTTTCG.........................................................................................................281.000.00-1.00---------------------------------
...........................GGGGTATGGAGAGGAAGGAAGAGGGA.....................................................................................................................................................................................................261.000.00-----------1.00-----------------------
.................................................................................................................................................................................................................................AAGTGATCCTCTTGCCTCAGCCTGTC261.000.001.00----------------------------------
........TTGTGGTCCCGCCTCACCTGGG............................................................................................................................................................................................................................2211.001.00----------1.00------------------------
....................................................................................................................TTCTTTTTCTTTTTCTACTA..................................................................................................................201.000.00--------------1.00--------------------
......................................................................................................................CTTTTTCTTTTTCTTCTTTCTTCAG...........................................................................................................251.000.00-1.00---------------------------------
........................................................................................................................TTTTCTTTTTCTTCTTTCTTTTTCTTC.......................................................................................................271.000.001.00----------------------------------
.......................................................................................................................TTTTTCTTTTTCTTCTTTCTTTTTCCT........................................................................................................271.000.001.00----------------------------------
.......................................................................................................................TTTTTCTTTTTCTTCTTTCTTTTCAGG........................................................................................................271.000.001.00----------------------------------
.................................................................................................................................................................................AGTGTAGTGTGTGATCATCGTG...................................................2211.001.00-----------------1.00-----------------
...AAGGATTGTGGTCCCGCCTCA..................................................................................................................................................................................................................................2111.001.00------------1.00----------------------
................................................................................................................................................................TGTTGAACAGGCTGGGCTG.......................................................................191.000.00-------------1.00---------------------
.....................................................................................................................TCTTTTTCTTTTTCTTCTTTCTTTG............................................................................................................251.000.00---1.00-------------------------------
.......................ACCTGGGGTATGGAGAGGAAGG.............................................................................................................................................................................................................2221.001.00------1.00----------------------------
......................................................................................................................CTTTTTCTTTTTCTTCTTTCTTTTTTTCG.......................................................................................................291.000.00--1.00--------------------------------
...................................................................................................................CTTCTTTTTCTTTTTCTTCTTTCTTTTTG..........................................................................................................2921.001.00-0.50----------------------0.50----------
..................................GGAGAGGAAGGAAGAGGTGAGC..................................................................................................................................................................................................2220.500.50-----------------------------0.50-----
..............................................................................................................................................................................GAAAGTGTAGTGTGTGATC.........................................................1920.500.50--------------------------0.50--------
..............................GTATGGAGAGGAAGGAAGAG........................................................................................................................................................................................................2020.500.50---------------------------0.50-------
........................................................................................................................TTTTCTTTTTCTTCTTTCTTTTTG..........................................................................................................2420.500.50--0.50--------------------------------
......................................AGGAAGGAAGAGGTGAGCATCA..............................................................................................................................................................................................2220.500.50-------------------------0.50---------
................................ATGGAGAGGAAGGAAGAGGTGAG...................................................................................................................................................................................................2320.500.50----------------------------0.50------
................................ATGGAGAGGAAGGAAGAGG.......................................................................................................................................................................................................1930.330.33--------------------------------0.33--
................................ATGGAGAGGAAGGAAGAGGGAAT...................................................................................................................................................................................................2330.330.33-------------------------------0.33---
................................ATGGAGAGGAAGGAAGAGGGA.....................................................................................................................................................................................................2130.330.33------------------------------0.33----
.....................................GAGGAAGGAAGAGGTGAG...................................................................................................................................................................................................1870.290.29--------0.29--------------------------
.........................................................................................................................TTTCTTTTTCTTCTTTCTTTTTG..........................................................................................................2340.250.25--0.25--------------------------------
.................................TGGAGAGGAAGGAAGAGG.......................................................................................................................................................................................................1840.250.25-----------------------0.25-----------
.................................TGGAGAGGAAGGAAGAGGCGGA...................................................................................................................................................................................................2240.250.25----------------------------------0.25
..GAAGGATTGTGGTCC.........................................................................................................................................................................................................................................1550.200.20---------0.20-------------------------
...........................................................................................................................TCTTTTTCTTCTTTCTTTTTG..........................................................................................................2160.170.17----0.17------------------------------
...................................................TGAGCATCAGCATCAC.......................................................................................................................................................................................1660.170.17----0.17------------------------------
............................................................................................................................CTTTTTCTTCTTTCTTTTTG..........................................................................................................2070.140.14--0.14--------------------------------

Antisense strand
GCGAAGGATTGTGGTCCCGCCTCACCTGGGGTATGGAGAGGAAGGAAGAGGTGAGCATCAGCATCACCTGCCTTCCTCACTAGCTGTGGCTGCTTCCACATTGCTTGAAACAGGGCTTCTTTTTCTTTTTCTTCTTTCTTTTTGAGATAGGGTCTCCCTCTGTTGAACAGGCTGGAAAGTGTAGTGTGTGATCATCGTGTACTATGGCCTGGAACTCTTGGCCTCAAGTGATCCTCTTGCCTCAGCCTTC
...........................................................................................................................((.....((.((((((.((((.(((((((.....)))))))...))))..))))))...)).....))...........................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR343335SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
..................................................................................................................GCTTCTTTTTCTTTTTGG...................................................................................................................... 182.000.00-------2.00---------------------------
...............................................................................................................................TTTCTTCTTTCTTTTTGTCT....................................................................................................... 201.000.00-------------------1.00---------------
..........................................................................................................................................................................................................................AGAGGATCACTTGAGGCCA............. 1901.001.00---------------------1.00-------------
......................................................................................................................................................................................................................CTCTTGGCCTCAAGTGATCCTCTCTTG......... 271.000.00---1.00-------------------------------
...........................................................................................................................................................................ACACTACACTTTCCAG............................................................... 1630.330.33---------------------------------0.33-