ID: uc011jzo.1_intron_1_0_chr7_27788306_f.5p
GENE: (2)
chr7:27788256-27788505+


(1)
B-CELL 		(1)
BRAIN 		(10)
BREAST 		(18)
CELL-LINE 		(2)
HEART 		(4)
LIVER 		(2)
OTHER 		(8)
SKIN

Sense strand
TAACTCCATATATTCATCCACATCCAAAAGATTGGGTTGGTATATTCAAGGTAAGAAAGCTTTCTGAATATGTTCTCCATGTAAACACTTAAAATTTTCTTTTAAAACAGATTGATAAGTAGCTTTTACTTGCCTTAACTCTGCATTAAGACTCATTTTTGTAAACATCACCATGAAATATTTAACAGTGGGGAGTAGATAAAATGGATGTTGGGAACTCCATTTCACCAGATTTTCCTCTCCCTGATCA
......................................................(((((((.((((.(((((.....)))))......((((((.....))))))..)))).........)))))))...........................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343335SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
........................................................................................................AAACAGATTGATAAGCTTT...............................................................................................................................1963.000.0027.0012.007.0010.00-2.00-3.00-----2.00--------------------------------------
........................................................................................................AAACAGATTGATAAGCTT................................................................................................................................1818.000.002.008.003.00--4.00-1.00--------------------------------------------
..............................ATTGGGTTGGTATATTCA..........................................................................................................................................................................................................1814.004.00------4.00---------------------------------------------
..ACTCCATATATTCATCCACATCCAAAAG............................................................................................................................................................................................................................2813.003.00----3.00-----------------------------------------------
......................................................................................................................GTAGCTTTTACTTGCTATG.................................................................................................................193.000.00---------3.00------------------------------------------
.........................AAAAGATTGGGTTGGTTTT..............................................................................................................................................................................................................192.000.00--------------2.00-------------------------------------
...........ATTCATCCACATCCAAAAG............................................................................................................................................................................................................................1912.002.00----1.00------1.00----------------------------------------
........................................................AAGCTTTCTGAATATGTTC...............................................................................................................................................................................1912.002.00--------2.00-------------------------------------------
..ACTCCATATATTCATCCACATCC.................................................................................................................................................................................................................................2312.002.00----2.00-----------------------------------------------
......CATATATTCATCCACATCCAAAAG............................................................................................................................................................................................................................2412.002.00----------1.00---------------------------1.00-------------
.....CCATATATTCATCCACATCCAAAAG............................................................................................................................................................................................................................2512.002.00-----------2.00----------------------------------------
........................................................................................................AAACAGATTGATAAGCTTA...............................................................................................................................192.000.00-2.00--------------------------------------------------
........................................................................................................AAACAGATTGATAAGTAGCTTT............................................................................................................................2211.001.00---------------1.00------------------------------------
..............................ATTGGGTTGGTATATTCAAGG.......................................................................................................................................................................................................2111.001.00-----------------1.00----------------------------------
...CTCCATATATTCATCCACATCCAATAG............................................................................................................................................................................................................................271.000.00----------1.00-----------------------------------------
.........................AAAAGATTGGGTTGGTATA..............................................................................................................................................................................................................1911.001.00--------1.00-------------------------------------------
.........................AAAAGATTGGGTTGGTATATT............................................................................................................................................................................................................2111.001.00----------------------------1.00-----------------------
..................................................................................................................................................................................................GTAGATAAAATGGATGT.......................................1711.001.00-------------------------------1.00--------------------
........................CAAAAGATTGGGTTGGTA................................................................................................................................................................................................................1811.001.00------1.00---------------------------------------------
........................CAAAAGATTGGGTTGGTATA..............................................................................................................................................................................................................2011.001.00-------------------------1.00--------------------------
...CTCCATATATTCATCCACATCCAAAAG............................................................................................................................................................................................................................2711.001.00----------1.00-----------------------------------------
.........................AAAAGATTGGGTTGGTAT...............................................................................................................................................................................................................1811.001.00------------------------------------1.00---------------
..............CATCCACATCCAAAAGATTGGGTTGG..................................................................................................................................................................................................................2611.001.00----------------------1.00-----------------------------
.............................GATTGGGTTGGTATATTCAAGGTTGGA..................................................................................................................................................................................................271.000.00--------------------------------1.00-------------------
............................AGATTGGGTTGGTATGCTT...........................................................................................................................................................................................................191.000.00---------------------------1.00------------------------
................TCCACATCCAAAAGATCTTA......................................................................................................................................................................................................................201.000.00----------------------------------------1.00-----------
..........................................................................................................................................................................................AGTGGGGAGTAGATAAAATGG...........................................2111.001.00--------1.00-------------------------------------------
..........................................................................................................................................................................................AGTGGGGAGTAGATAAAATGGATGTT......................................2611.001.00-----------------------------------1.00----------------
...........................................................................................................................................................................................GTGGGGAGTAGATAAAATG............................................1911.001.00---------------1.00------------------------------------
.......................CCAAAAGATTGGGTTGGTATATT............................................................................................................................................................................................................2311.001.00--------------------1.00-------------------------------
........................CAAAAGATTGGGTTGGTATATT............................................................................................................................................................................................................2211.001.00---------------------1.00------------------------------
..........................................................................CTCCATGTAAACACTTAAAATTTT........................................................................................................................................................2411.001.00------------------------------1.00---------------------
................................TGGGTTGGTATATTCAAGGTT.....................................................................................................................................................................................................211.000.00-----------------------1.00----------------------------
.............................GATTGGGTTGGTATA..............................................................................................................................................................................................................1530.330.33-----------------------------------------0.33----------
............................................................................................AATTTTCTTTTAAAACAG............................................................................................................................................1840.250.25---------0.25------------------------------------------

Antisense strand
TAACTCCATATATTCATCCACATCCAAAAGATTGGGTTGGTATATTCAAGGTAAGAAAGCTTTCTGAATATGTTCTCCATGTAAACACTTAAAATTTTCTTTTAAAACAGATTGATAAGTAGCTTTTACTTGCCTTAACTCTGCATTAAGACTCATTTTTGTAAACATCACCATGAAATATTTAACAGTGGGGAGTAGATAAAATGGATGTTGGGAACTCCATTTCACCAGATTTTCCTCTCCCTGATCA
......................................................(((((((.((((.(((((.....)))))......((((((.....))))))..)))).........)))))))...........................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343335SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
.................................................................................................................................................................................................................................CACCAGATTTTCCTCGAGG...... 195.000.00------------1.00---2.00--1.00---------1.00----------------------
.................................................................................................................................................................................................................................CACCAGATTTTCCTCGAG....... 184.000.00------------1.00-----------1.00--------1.001.00-----------------
.......................................................................................................................................................................................................................................ATTTTCCTCTCCCTGATGTAT 211.000.00--------------------------1.00-------------------------
.................................................................................................................................................................................................................................CACCAGATTTTCCTCGA........ 171.000.00-------------------------------------1.00--------------
........TTGGATGTGGATGAATATA............................................................................................................................................................................................................................... 1911.001.00-----------------1.00----------------------------------
.................................................................................................................................................................................................................................CACCAGATTTTCCTCGGGG...... 191.000.00---------------------------------------1.00------------
.................................................................................................................................................................................................................................CACCAGATTTTCCTCTGAGG..... 200.570.00------------0.14--------------------------------0.140.14-0.14---
.................................................................................................................................................................................................................................CACCAGATTTTCCTCTGA....... 180.430.00--------------------------------------------0.14----0.140.14-
.................................................................................................................................................................................................................................CACCAGATTTTCCTCTGAG...... 190.290.00------------------------------------------0.14----0.14----
.................................................................................................................................................................................................................................AGAGGAAAATCTGGTG......... 1670.140.14-------------------------------------------0.14--------
.................................................................................................................................................................................................................................CACCAGATTTTCCTCTTAGG..... 200.140.00---------------------------------------------------0.14