ID: uc011edj.1_intron_17_0_chr6_136963708_r.3p
GENE: (2)
chr6:136963658-136963907-


(2)
B-CELL 		(4)
BRAIN 		(12)
BREAST 		(3)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAATTATTAAGTAGAGTAATCATTACCCTTGGGACTTGAGAATGAATTGTGCTTTCCATCCAGATAATTCTTTCATGAAAAATAGTGTACCAGGAAAAATGGCTGTGTATATCACTTTAAAAATAATTAAACAAAATTATTGTTGTTATGTTATTTTCCATTTGGATGACTCAGTATATTTTCTTGTTGTTGTTCTAGAAAGGTATACATGAGTGGAATTTTAGTGCCTCTTCTGTCAGGGGAGTGAG
............................................................................................((((((((...((((.((.((((......((((((((..(((((........)))))..)))))))).......)))))).))))...))))))))..............................................................
.........................................................................................90..................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormTAX577742(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)
..............................................................................................GGAAAAATGGCTGTGTG...........................................................................................................................................1715.000.004.00-1.00--1.001.001.002.002.00------2.00--------------1.00------
..............................................................................................GGAAAAATGGCTGTGTATAGCT......................................................................................................................................227.000.00-2.001.00-2.00-1.00----------1.00--------------------
..............................................................................................GGAAAAATGGCTGTGTATAGCA......................................................................................................................................226.000.00-1.001.00-1.001.00-----------1.00--------1.00-----------
..............................................................................................GGAAAAATGGCTGTGTATAGTT......................................................................................................................................224.000.001.001.001.00----1.00------------------------------
..............................................................................................GGAAAAATGGCTGTGTATAGTA......................................................................................................................................222.000.00-----1.00---1.00----------------------------
......................................................................................................................................................................................................AGAAAGGTATACATGAGTGGAATT............................2412.002.00----------2.00---------------------------
......................................................................................................................................................................................................AGAAAGGTATACATGAGTGGAATTT...........................2512.002.00--------------2.00-----------------------
........TTAAGTAGAGTAATCATTACCCTTGGGACTTG..................................................................................................................................................................................................................3212.002.00-------------2.00------------------------
..............................................................................................GGAAAAATGGCTGTGTGACT........................................................................................................................................201.000.00-----------------------1.00--------------
..............................................................................................GGAAAAATGGCTGTGTGTGG........................................................................................................................................201.000.00--1.00-----------------------------------
..............................................................................................GGAAAAATGGCTGTGTAACT........................................................................................................................................201.000.001.00-------------------------------------
......................................................................................................................................................................................................................GTGGAATTTTAGTGCCTCTTCTGTCAGGGGAGT...3311.001.00------------------1.00-------------------
............................CCTTGGGACTTGAGAATGAATTGTG.....................................................................................................................................................................................................2511.001.00------------------------------1.00-------
..............................................................................................GGAAAAATGGCTGTGTAGCG........................................................................................................................................201.000.00---1.00----------------------------------
.......................................................................................................................................................................................TCTTGTTGTTGTTCTGAGG................................................191.000.00---------------1.00----------------------
....................................................................................................................................................TATGTTATTTTCCATTTTTC..................................................................................201.000.00---------------1.00----------------------
..............................................................................................................................................................................................GTTGTTCTAGAAAGGTATACATGAGTGGAATT............................3211.001.00-1.00------------------------------------
..............................................................................................GGAAAAATGGCTGTGTATAGCTA.....................................................................................................................................231.000.00--------1.00-----------------------------
..............................................................................................GGAAAAATGGCTGTGTAAAGA.......................................................................................................................................211.000.001.00-------------------------------------
..................................................................................................................................................................................................................ATGAGTGGAATTTTAGTGCC....................2011.001.00----------------------------1.00---------
..............................................................................................GGAAAAATGGCTGTGTAACTC.......................................................................................................................................211.000.00---1.00----------------------------------
..............................................................................................GGAAAAATGGCTGTGTGTAG........................................................................................................................................201.000.00---1.00----------------------------------
..............................................................................................GGAAAAATGGCTGTGTGAAG........................................................................................................................................201.000.00---1.00----------------------------------
..............................................................................................GGAAAAATGGCTGTGTGGA.........................................................................................................................................191.000.00----1.00---------------------------------
........................................................................................................................................................................................................AAAGGTATACATGAGTGGA...............................1911.001.00---------------------------1.00----------
..............................................................................................GGAAAAATGGCTGTGTATAGT.......................................................................................................................................211.000.00------1.00-------------------------------
..............................................................................................GGAAAAATGGCTGTGTGCA.........................................................................................................................................191.000.00-------1.00------------------------------
............................................................................................................................................................................................................GTATACATGAGTGGAATTTA..........................201.000.00---------------------------------1.00----
..............................................................................................GGAAAAATGGCTGTGTATATCA......................................................................................................................................2211.001.00-1.00------------------------------------
..........................................................................................................................................................................................................AGGTATACATGAGTGGAATTT...........................2111.001.00----------------------1.00---------------
..............................................................................................GGAAAAATGGCTGTGTATAGCAT.....................................................................................................................................231.000.00--1.00-----------------------------------
.............................................................................................AGGAAAAATGGCTGTGTAT..........................................................................................................................................1911.001.00---------------------1.00----------------
......................................................................................................................................................................................................AGAAAGGTATACATGAGTGGAATTTT..........................2611.001.00----------1.00---------------------------
.......................................................................................................................................................................................................................................CTTCTGTCAGGGGAG....1590.220.22------------------------------------0.110.11
..................................................................................................................................................................................................................ATGAGTGGAATTTTAG........................1670.140.14-----------------------------------0.14--

Antisense strand
AGGAATTATTAAGTAGAGTAATCATTACCCTTGGGACTTGAGAATGAATTGTGCTTTCCATCCAGATAATTCTTTCATGAAAAATAGTGTACCAGGAAAAATGGCTGTGTATATCACTTTAAAAATAATTAAACAAAATTATTGTTGTTATGTTATTTTCCATTTGGATGACTCAGTATATTTTCTTGTTGTTGTTCTAGAAAGGTATACATGAGTGGAATTTTAGTGCCTCTTCTGTCAGGGGAGTGAG
............................................................................................((((((((...((((.((.((((......((((((((..(((((........)))))..)))))))).......)))))).))))...))))))))..............................................................
.........................................................................................90..................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormTAX577742(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)
.................................................................................................................................................................................................................ACTAAAATTCCACTCATG....................... 1824.004.00-----------2.002.00-------------------------
.........................TACCCTTGGGACTTGAGTGGC............................................................................................................................................................................................................ 211.000.00-------------------1.00------------------
..................................GACTTGAGAATGAATTGGG..................................................................................................................................................................................................... 191.000.00--------------------------------1.00-----
................................................TTGTGCTTTCCATCCAGATG...................................................................................................................................................................................... 201.000.00-----------------------------1.00--------
..................................................................................................................................................................................................................................TGCCTCTTCTGTCAGGAC...... 181.000.00-------------------------1.00------------
................................................................................................................................................................................TATATTTTCTTGTTGTTGG....................................................... 191.000.00------------------------1.00-------------
.................................................................................................................................................................................................................CTAAAATTCCACTCATG........................ 1731.001.00-----------0.670.33-------------------------
..................................................................................................................................................................................TATTTTCTTGTTGTTGCTG..................................................... 191.000.00--------------------1.00-----------------
...................................................................................................................................................................................................................................CCCTGACAGAAGAGGC....... 1640.500.50------------------0.25---------------0.25---