ID: uc011ect.1_intron_8_0_chr6_134494705_r
GENE: (2)
chr6:134494655-134495192-


(3)
BREAST 		(19)
CELL-LINE 		(5)
HEART 		(12)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(2)
XRN.ip

Sense strand
TCTCCCAACCTCAGGAGCCTGAGCTTATGAATGCCAACCCTTCTCCTCCAGTAAGTTTTTGTATGTGCCGTGCATCTGTGGAGAACTGTAAGGGAGTCAGTTAGTATTCCTACATTAATGGATTAAAATAGCATTTCTAGAAATTAGTATCAAGGCAGGAATGCTTCATTATGGCATAACAAGTGATATAAATATTTAAGTATTGAGTCAGAGTATTATTTTATTTTTTTCCTGGGCATATTTTACCTCCAAAGTGGTTATTTTAAAAGGCATATTTCATAAAAAGGTTTTATCTGTCTGAAACAACATGACTGTGTGCAGTTTCCATACTCATTTGAAATGTGATGAAATGTAGTTTTGAATGTTTATAGATGTATGGTCATTTGCATCAGTCATTTGTAGATGTAACATTTTCTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTCTAGCCAAGTCCTTCTCAGCAAATCAACCTTGGCCCGTCGTCCAATCCTCATGC
......................................................................................................................................................................................................................................................................................................................................................................................................((.((((((((((((((........))))))........)))))))).)).............(((....((((((((....))))))))....)))...................................................
....................................................................................................................................................................................................................................................................................................................................................................................................389................................................................................................488................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTCATTTGTAGATG.....................................................................................................................................18110.0010.004.00-5.00--1.00--------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTT......................................................6717.007.00-6.00------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTT........................................................6915.005.00-5.00------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTCT....................................................7215.005.00-5.00------------------------------------------------------------------
.........................................................................ATCTGTGGAGAACTGTAAGGGAGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.004.00----3.00------------------------------------1.00--------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTT.......................................................6614.004.00-2.00------2.00-----------------------------------------------------------
................GCCTGAGCTTATGAATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004.003.00-------------------------------1.00-----------------------------------
.......................................................TTTTTGTATGTGCCGTGCATCTGTGGAGAACTGTAAGGGAGTCAGTTAGTATTCCTACATTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................6514.004.00--------4.00-----------------------------------------------------------
.......................................CTTCTCCTCCAGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1624.004.00-------------------1.50-----------0.500.50------------1.00--------------------0.50-
.............................................CTCCAGTAAGTTTTTGTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.00----1.002.00--------------------------------------------------------------
..................................................GTAAGTTTTTGTATGTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00---------------3.00----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAAG.................................................223.000.00------1.00--2.00----------------------------------------------------------
.....................................................................GTGCATCTGTGGAGAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003.002.00-1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TTGCATCAGTCATTTGTAGATG.....................................................................................................................................2213.003.00--2.00--1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................ATCTGTCTGAAACAACATGA...................................................................................................................................................................................................................................2013.003.00----3.00---------------------------------------------------------------
............AGGAGCCTGAGCTTATGAATGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00----1.00----------------------------------------------1.00----------------
..............................................................................TGGAGAACTGTAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.002.001.00-------------------------------------------------1.00-----------------
..............GAGCCTGAGCTTATGAATGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00-----2.00--------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAGACGG..............................................242.000.00-------2.00------------------------------------------------------------
................................................................................GAGAACTGTAAGGGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.002.00-------------------------------------------------------------------
......AACCTCAGGAGCCTGAGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-----------2.00--------------------------------------------------------
...CCCAACCTCAGGAGCCTGAGCTTATGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002.00----------2.00---------------------------------------------------------
.............................................................................GTGGAGAACTGTAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.002.002.00-------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTTGG.................................................222.000.00---1.00--1.00-------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAAAAG...............................................232.000.00----------------1.00-------------------------------------------1.00-------
.....................................................................................................................................................................................................................................................................................................CTGTCTGAAACAACATGACTGTGTGCAGTTTCC....................................................................................................................................................................................................................3312.002.00---------------------------2.00----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................GTGATGAAATGTAGTTTTGAATG..............................................................................................................................................................................2312.002.00----2.00---------------------------------------------------------------
............................................................................................................................................................AGGAATGCTTCATTATGGC...........................................................................................................................................................................................................................................................................................................................................................................1912.002.00--------------------------------------1.00---------------1.00-------------
.......ACCTCAGGAGCCTGAGCTTATGAATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002.00----2.00---------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TTTTGAATGTTTATAGATGTATG................................................................................................................................................................2312.002.00----2.00---------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTCT.....................................................712.000.00-2.00------------------------------------------------------------------
.................................................................................................CAGTTAGTATTCCTACATTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00--2.00-----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTTTTTTTTTTTTTCG....................................................212.000.00------2.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCAACCTTGGCCCGT................2012.002.00---------------------2.00----------------------------------------------
......................................................GTTTTTGTATGTGCCGTGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00------------------------2.00-------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAACCTTGGCCC..................1712.002.00-----------------------2.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTC.....................................................6912.002.00------------2.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................AACATGACTGTGTGCAG.........................................................................................................................................................................................................................1712.002.00----------------------------2.00---------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTTTCG................................................232.000.00---------1.00------1.00---------------------------------------------------
.............................................................................................................................................AATTAGTATCAAGGCAGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----2.00--------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................AATGTAGTTTTGAATGTTT...........................................................................................................................................................................1911.001.00----------------------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAAATG...............................................241.000.00------1.00-------------------------------------------------------------
......................................CCTTCTCCTCCAGTAAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------------1.00---------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTCT.....................................................701.000.00-1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTCTAGCCCGAT............................................231.000.00---1.00----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTACAG................................................231.000.00------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTCTAGCAGG..............................................221.000.00---1.00----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCGTCGTCCAATCCTCATG.2311.001.00--1.00-----------------------------------------------------------------
...........................................................................CTGTGGAGAACTGTAAGGGAGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-----------------1.00--------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTCTTTTTTTTCAG........................................................201.000.00--------------1.00-----------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCACCC.............................................241.000.00---1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................TGAATGTTTATAGATGTATGGTC.............................................................................................................................................................2311.001.00----1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGGTAG..............................................231.000.00-------1.00------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................TCTGTCTGAAACAACATGACTGTGTG............................................................................................................................................................................................................................2611.001.00--1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTCTAGCG................................................201.000.00---------1.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGTTTATGTTATAGATGTCTT.................................................................................................2511.001.00-----------------------------------------------------1.00--------------
..............................................................ATGTGCCGTGCATCTGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------------------------1.00-------------------
.............................................................................................................................................................................................................................................................................GCATATTTCATAAAAAGG...........................................................................................................................................................................................................................................................1811.001.001.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AACAACATGACTGTGTG............................................................................................................................................................................................................................1711.001.00--1.00-----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTACAGC...............................................241.000.00-------1.00------------------------------------------------------------
......................................................................................................................................................................................................................ATTATTTTATTTTTTTCCGGGC..............................................................................................................................................................................................................................................................................................................221.000.00-------1.00------------------------------------------------------------
......AACCTCAGGAGCCTGAGCTTATGAATGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-----1.00--------------------------------------------------------------
.............................AATGCCAACCCTTCTCCTCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTTTTTTTTTTTTTCTCCAG................................................241.000.00------1.00-------------------------------------------------------------
...........................TGAATGCCAACCCTTCTCCTCCACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00------------------1.00-------------------------------------------------
................................................................................................................................................TAGTATCAAGGCAGGATTGG......................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------1.00-----------------------------------------------------
.....................................................................................CTGTAAGGGAGTCAGTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------1.00---
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAGCCAG..............................................241.000.00---1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTTGGCCCGTCGTC............2011.001.001.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................GTGATGAAATGTAGTTT....................................................................................................................................................................................1731.001.000.67-0.33-----------------------------------------------------------------
.........................................................................ATCTGTGGAGAACTGTAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------1.00------------------------------------------
....................................................................CGTGCATCTGTGGAGAACTGTAAGGGAGTCAGTTAGTATTCCTACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................4711.001.00--------1.00-----------------------------------------------------------
.................................................................................................................................................AGTATCAAGGCAGGAATGCTTCATTATGGC...........................................................................................................................................................................................................................................................................................................................................................................3011.001.001.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAGACG...............................................231.000.00-------------1.00------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTCT....................................................6911.001.00--------------------------1.00-----------------------------------------
...........CAGGAGCCTGAGCTTATGAATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------1.00------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAACCTTGGCCCG.................1711.001.00--1.00-----------------------------------------------------------------
..TCCCAACCTCAGGAGCCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAGCCGT..............................................241.000.00------1.00-------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................ATGACTGTGTGCAGTTTCCATACTC..............................................................................................................................................................................................................2511.001.00-------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCAAG..............................................231.000.00------1.00-------------------------------------------------------------
........................................................................................................................................................................................................................TATTTTATTTTTTTCCTGGGCATATTTTAC....................................................................................................................................................................................................................................................................................................3011.001.001.00-------------------------------------------------------------------
............AGGAGCCTGAGCTTATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------------------------
............................................................GTATGTGCCGTGCATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00----------------------1.00---------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTTCGC................................................231.000.00---1.00----------------------------------------------------------------
................................................................GTGCCGTGCATCTGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTTT....................................................721.000.00-1.00------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGACGG..............................................231.000.00-------1.00------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................ATGTAGTTTTGAATGTTTATAGATG....................................................................................................................................................................2511.001.00--1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTAAAAGAAATTCTTTTTTTTT..........................................................2611.001.00-----------------------------1.00--------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTTTTTTTTTTTTTCTAGGAT...............................................251.000.00---1.00----------------------------------------------------------------
................GCCTGAGCTTATGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.001.00-------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCAAATCAACCTTGGCC...................2111.001.00--------------------------------------------------------1.00-----------
..................................................GTAAGTTTTTGTATGTGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------------1.00------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGGCCCGTCGTCCAATCC......2211.001.00-------------------------1.00------------------------------------------
...........................................TCCTCCAGTAAGTTTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------1.00--
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAAGTC...............................................231.000.00---1.00----------------------------------------------------------------
.....................AGCTTATGAATGCCAACCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------1.00--------
...........................................................................CTGTGGAGAACTGTAAGGGAGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------1.00--------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCATGG.............................................241.000.00-------------1.00------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTTCTG................................................231.000.00---1.00----------------------------------------------------------------
........................TTATGAATGCCAACCCTTCTCCTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00---------------------------------1.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTTTTTTTTTTTTTCTGGTG................................................241.000.00-------1.00------------------------------------------------------------
.....................................................................................................................ATGGATTAAAATAGCATTT..................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------1.00------
.............................AATGCCAACCCTTCTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------1.00-------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTAGTTTTGAATGTTTATAGATG....................................................................................................................................................................2411.001.00-----1.00--------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTTTTTTTTTTTTTCTTTAG................................................241.000.00------1.00-------------------------------------------------------------
...........................................................TGTATGTGCCGTGCATCTGTGGAGAACTGTAAGGGAGTCAGTTAGTATTCCTACATTAATGGATTAAAATAGCATTTCTAGAAATTAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................9011.001.00------------1.00-------------------------------------------------------
.....................................................AGTTTTTGTATGTGCCGTGCATCTGTGGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00---------------------------------------------------------------1.00----
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCATG..............................................231.000.00------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTTTT...................................................7011.007.00--------------------------1.00-----------------------------------------
............AGGAGCCTGAGCTTATGAATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------1.00-------------------------------------------------
..................................................GTAAGTTTTTGTATGTGCCGTGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------------------------------------1.00--------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAAGGG...............................................231.000.00---1.00----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCAGTT.............................................241.000.00---1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAACCTTGGCCCGTCGT.............2211.001.00---------------------------------------------------------1.00----------
..........................................................................................................................................................................................................................................................................................AAAGGTTTTATCTGTCTGAAACAACA......................................................................................................................................................................................................................................2611.001.00-----------------------------1.00--------------------------------------
......................................................................................................AGTATTCCTACATTAATGGATTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------------------------------1.00------------------
................................................................................................................................................................................................................................................................................................................................................................................................TGCATCAGTCATTTGTAGATG.....................................................................................................................................2111.001.001.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGCCAGGAG...........................................261.000.00---1.00----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................ATGTGATGAAATGTAGTT.....................................................................................................................................................................................1821.001.00--1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTATGTTATAGATGTCTTCCTTTG...........................................................................................2911.001.00--1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAGGC................................................221.000.00---1.00----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTTTTTTTTTTTTAATG...................................................221.000.00---------1.00----------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACCTTGGCCCGTCGTC............2111.001.00---------------------------------------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................AACAACATGACTGTGTGC...........................................................................................................................................................................................................................1811.001.001.00-------------------------------------------------------------------
...................................................................................................................................................................................................................AGTATTATTTTATTTTTTTCCCGGG..............................................................................................................................................................................................................................................................................................................251.000.00---1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTCTAGCCAGTTG...........................................241.000.00---1.00----------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTTTTCTAAAGG...............................................231.000.00----------------1.00---------------------------------------------------
............AGGAGCCTGAGCTTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------1.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAACCTTGGCCCGTCGTC............2211.001.001.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCTTTGAAGCAATGGTATTAA............................................................................2611.001.00----------------------------------------------1.00---------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGGAG...............................................221.000.00---1.00----------------------------------------------------------------
.................................CCAACCCTTCTCCTCCAGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00------------------------
..................................................................GCCGTGCATCTGTGGAGAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----1.00--------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTATGTTATAGATGTCTTCCT..............................................................................................2611.001.00--------------------------------------------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTCT....................................................7111.001.00------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTTCT...................................................7011.007.00-1.00------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCGTCGTCCAATCC......1911.001.00----------------------------------------------------------1.00---------
..............................................................................................................................................................................................AATATTTAAGTATTGAGTCAGAGTATT.................................................................................................................................................................................................................................................................................................................................2711.001.00-----------------------------------1.00--------------------------------
..........................................................................................................................................................................................TATAAATATTTAAGTATTG.............................................................................................................................................................................................................................................................................................................................................1920.500.50--------------0.50-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TGAAATGTGATGAAATGTAG.......................................................................................................................................................................................2020.500.50-----0.50--------------------------------------------------------------
..................................................................GCCGTGCATCTGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50------------------------------0.50-------------------------------------
......................................................................................................................................................................................................................................................CTCCAAAGTGGTTATTTT..................................................................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------------0.50
....................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCATTTGTAGATG.....................................................................................................................................1720.500.50--0.50-----------------------------------------------------------------
................................................CAGTAAGTTTTTGTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.330.330.33-------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGTCATTTGTAGATG.....................................................................................................................................1670.290.290.140.14------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAGGTT...............................................2450.200.20---0.20----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAG..................................................2150.200.20------0.20-------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAGTG................................................2350.200.20---0.20----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTTTTTTTTTCTAGTAGA..............................................2550.200.20-------0.20------------------------------------------------------------

Antisense strand
TCTCCCAACCTCAGGAGCCTGAGCTTATGAATGCCAACCCTTCTCCTCCAGTAAGTTTTTGTATGTGCCGTGCATCTGTGGAGAACTGTAAGGGAGTCAGTTAGTATTCCTACATTAATGGATTAAAATAGCATTTCTAGAAATTAGTATCAAGGCAGGAATGCTTCATTATGGCATAACAAGTGATATAAATATTTAAGTATTGAGTCAGAGTATTATTTTATTTTTTTCCTGGGCATATTTTACCTCCAAAGTGGTTATTTTAAAAGGCATATTTCATAAAAAGGTTTTATCTGTCTGAAACAACATGACTGTGTGCAGTTTCCATACTCATTTGAAATGTGATGAAATGTAGTTTTGAATGTTTATAGATGTATGGTCATTTGCATCAGTCATTTGTAGATGTAACATTTTCTACATCGTTTATGTTATAGATGTCTTCCTTTGAAGCAATGGTATTAAAAGAAATTCTTTTTTTTTTTTTCTAGCCAAGTCCTTCTCAGCAAATCAACCTTGGCCCGTCGTCCAATCCTCATGC
......................................................................................................................................................................................................................................................................................................................................................................................................((.((((((((((((((........))))))........)))))))).)).............(((....((((((((....))))))))....)))...................................................
....................................................................................................................................................................................................................................................................................................................................................................................................389................................................................................................488................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
................................GCCAACCCTTCTCCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00----------1.001.00--------------------------------------------------------
................................GCCAACCCTTCTCCTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 182.000.00----------1.00------1.00--------------------------------------------------
......ATTCATAAGCTCAGGCTCCTGAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2611.001.00----------------------------------1.00---------------------------------
..................................................................................GAACTGTAAGGGAGTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---1.00----------------------------------------------------------------
........TTCATAAGCTCAGGCTCCTGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2311.001.00------------------------------------1.00-------------------------------
.................................................................................................................................................................................AACAAGTGATATAAATTTA...................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------1.00------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCAAGTCCTTCGATG................................... 201.000.00----------------------1.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGTTTTGAATGTTTATACTCC.................................................................................................................................................................... 211.000.00--------------1.00-----------------------------------------------------
...................GAAGGGTTGGCATTCATAAGCTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2411.001.00--------------------------------------------------------------1.00-----
....CCAACCTCAGGAGCCACGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------------1.00------------------------------
.................................................................................................................................................................................................................................................................................................................................TTTCCATACTCATTTAAC....................................................................................................................................................................................................... 181.000.00------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTTCTAGTGT............................................... 221.000.00-------------------------------------------------------1.00------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGTTTATAGATGTAAGC............................................................................................................................................................... 181.000.00-------------1.00------------------------------------------------------