ID: uc011duj.1_intron_1_0_chr6_41877261_r.5p
GENE: (1)
chr6:41888543-41888792-


(13)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(38)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(7)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TACTGTGTGATTCTGCCACCTTCCTGGCCCGACGCCATGGGAGTGACTTGGTAGGACTGCAGGGGGTTTTGTGGGGCGGGGCTTGGAGTTGTGAAAGGCCGGAAAGAGGACCTTGACCATGGTCCGCCGTCCTCTGGGAGCTGAGGGAGATGTCCTCGGGTTGTGTAGATGAGAGGATGCCGTCCGGGCTGCGGGTTCCCCGGGCTTGTTTCCTCAGAGATGCGCCCCTTCCTCTTGGAAGGCGGGAAAG
.............................................................................................................................................................(((...(((((......((((...))))...)))))....)))..................................................
..........................................................................................................................................................155..........................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
...............................................................................................................................................................GTTGTGTAGATGAGAGGA.........................................................................18170.0070.0017.0043.005.002.00-2.00------------------1.00------------------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATG.......................................................................20151.0051.0025.00-10.00-2.00-2.001.00-----1.00-1.00---2.00--1.00---------------1.00---------1.00------------1.00-------------1.00-----1.001.00--------------
...............................................................................................................................................................GTTGTGTAGATGAGAGG..........................................................................17121.0021.00-15.004.00-----2.00----------------------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGGA.........................................................................20119.0019.008.00-2.003.002.00----------1.00-1.00----1.00------------1.00-------------------------------------------------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAGGA.........................................................................21117.0017.002.00-3.001.00-------4.00--4.00-2.00---------------1.00----------------------------------------------------------------
..................................................................................................................................................................GTGTAGATGAGAGGATGC......................................................................18113.0013.00--2.006.00--3.00---------------1.00--------------------------------------------------------------------1.00-----
................................................................................................................................................................TTGTGTAGATGAGAGGATG.......................................................................19111.0011.003.001.001.00-1.00-2.00-1.00---1.00-------------1.00----------------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGC......................................................................21110.0010.006.00---------2.00---------------------------1.00--------------------------------------1.00-------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGCC.....................................................................22110.0010.00---1.00-1.00------2.001.00----------1.00-1.00--------------------1.00---------1.00--------------------------1.00------------
................................................................................................................................................................TTGTGTAGATGAGAGGATGC......................................................................2018.008.001.00-1.00---2.00-------------1.00---1.00---------2.00--------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGAT........................................................................1917.007.001.00-3.00-----1.00----1.00--------------------------------------------------------------1.00--------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAGG..........................................................................2016.006.005.00---------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................TGTGTAGATGAGAGGATG.......................................................................1816.006.00------1.00--1.00--1.00-------------1.001.00------------------------------------------------------------1.00--------
.....................................................................................................................................................ATGTCCTCGGGTTGTGTAGA.................................................................................2015.005.00-------1.00-------------4.00---------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGGATGC......................................................................2315.005.002.00---------1.00-------------------------------1.00---------1.00--------------------------------------------
....................................................................................................................................................................GTAGATGAGAGGATGCCGT...................................................................1914.004.003.00-----------------------------------1.00------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGG..........................................................................1914.004.002.00---1.00---1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGAGGATGC......................................................................2614.004.00--------------------1.00--------------1.001.00-----------------------------1.00------------------------------
.ACTGTGTGATTCTGCCACCTTCCTGGCCCGACGCCATGGGAGTGACTT.........................................................................................................................................................................................................4813.003.00------------------3.00------------------------------------------------------------------------------
..................................................................................................................................................................GTGTAGATGAGAGGATGCC.....................................................................1913.003.00-------------------1.00------------------------------------1.00-1.00--------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGGAT........................................................................2113.003.00----2.00--1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................TGTGTAGATGAGAGGATGC......................................................................1913.003.00---1.00------------1.00---------------------------1.00----------------------------------------------------
................................................................................................................................................................TTGTGTAGATGAGAGGA.........................................................................1722.502.50--------0.502.00---------------------------------------------------------------------------------------
.................................................................................................................................................................TGTGTAGATGAGAGGATGCC.....................................................................2012.002.00-----------------------1.00-----------------1.00-------------------------------------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGA............................................................................2012.002.001.00---------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGAGGAT........................................................................2412.002.00--------------------------------------------------------------1.00------------------------------1.00---
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGCCG....................................................................2312.002.00------------1.00---------------1.00--------------------------------------------------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGAGGA.........................................................................2312.002.00-----------1.00--1.00----------------------------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGCCGTCC.................................................................2612.002.00-----1.00----------1.00--------------------------------------------------------------------------------
................................................................................................................................................GGGAGATGTCCTCGGGTT........................................................................................1812.002.00----1.00---1.00----------------------------------------------------------------------------------------
.................................................................................................................................................GGAGATGTCCTCGGGTTGTG.....................................................................................2012.002.00-------------1.00-----------------------------------------------------------1.00-----------------------
...................................................................................................................................................AGATGTCCTCGGGTTGTGTAGA.................................................................................2212.002.002.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGGATGCC.....................................................................2412.002.00------1.00-----------------------------------------------------------------1.00------------------------
....................................................................................................................................................GATGTCCTCGGGTTGTGTAGATGAGAGGA.........................................................................2912.002.00-----2.00-------------------------------------------------------------------------------------------
................................................................................................................................................................TTGTGTAGATGAGAGGATGCC.....................................................................2112.002.00----------------------------------------1.00------------------1.00-------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGATC....................................................................2312.0051.00-------------------------------------2.00-----------------------------------------------------------
.......................................................................................................................................GGGAGCTGAGGGAGATGTCC...............................................................................................2012.002.00-------------------------------2.00-----------------------------------------------------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAG...........................................................................1912.002.00----1.00----------------------------1.00---------------------------------------------------------------
.........................................................................................................................GTCCGCCGTCCTCTGGTTC..............................................................................................................191.000.00---------------------------------------------------------------1.00---------------------------------
......................................GGGAGTGACTTGGTAGGACTGC..............................................................................................................................................................................................2211.001.00----------1.00--------------------------------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGCCGTCCGG...............................................................2811.001.00----------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................................................TCCGGGCTGCGGGTTCCCCGGGCTTG..........................................2611.001.00--------------------------------------------------------------------------------------------1.00----
...........................................................................................................................................................TCGGGTTGTGTAGATGAGAGGATGC......................................................................2511.001.00-----------------1.00-------------------------------------------------------------------------------
.ACTGTGTGATTCTGCCCCAC.....................................................................................................................................................................................................................................201.000.00------------------------------1.00------------------------------------------------------------------
.....................................................................................................................................................ATGTCCTCGGGTTGTGTAGAT................................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................ATGTCCTCGGGTTGTGTAGATG...............................................................................2211.001.00-------1.00-----------------------------------------------------------------------------------------
......................................................................................................AAAGAGGACCTTGACCATGG................................................................................................................................2011.001.00---------------------------1.00---------------------------------------------------------------------
.............................................ACTTGGTAGGACTGCAGGGGGTC......................................................................................................................................................................................231.000.00----------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................GAGATGTCCTCGGGTTGTG.....................................................................................1911.001.00---------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................TGTCCTCGGGTTGTGTAGATG...............................................................................2111.001.00----------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................................GTGTAGATGAGAGGATGCCGTCC.................................................................2311.001.00--------------------------------1.00----------------------------------------------------------------
...................................................................................................................................CTCTGGGAGCTGAGGGAGATGTCCTC.............................................................................................2611.001.00---------1.00---------------------------------------------------------------------------------------
.........................................................................................................................................................CCTCGGGTTGTGTAGATGAGAGGATG.......................................................................2611.001.00-------------------------1.00-----------------------------------------------------------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAGGATG.......................................................................2311.001.001.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................CCTCGGGTTGTGTAGAT................................................................................1711.001.00-----------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................TCCTCGGGTTGTGTAGAT................................................................................1811.001.00-------1.00-----------------------------------------------------------------------------------------
..........................................GTGACTTGGTAGGACTGGCG............................................................................................................................................................................................201.000.00-------------------------------------------------1.00-----------------------------------------------
................................................................................................................................................................TTGTGTAGATGAGAGGATGCCG....................................................................2211.001.00-----------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAAGA.........................................................................2021.000.50-------------------1.00-----------------------------------------------------------------------------
................................................TGGTAGGACTGCAGGCG.........................................................................................................................................................................................171.000.00-------------------------------------------------------------------------------------1.00-----------
...............................................................................................................................................AGGGAGATGTCCTCGGGT.........................................................................................1811.001.00-------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................TCGGGTTGTGTAGATGAGAGG..........................................................................2111.001.00-------------1.00-----------------------------------------------------------------------------------
................................................................................................................................................GGGAGATGTCCTCGGGTTGT......................................................................................2011.001.00------------------------------------------------------1.00------------------------------------------
....................................................................................................................................TCTGGGAGCTGAGGGAGATG..................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGAGGATG.......................................................................2511.001.00----------1.00--------------------------------------------------------------------------------------
...........................................TGACTTGGTAGGACTCTG.............................................................................................................................................................................................181.000.00--------------------------------------------------------------------1.00----------------------------
.......................................................................................................................................GGGAGCTGAGGGAGATGT.................................................................................................1821.001.00-------------------------------------------0.50----------------------------------------------------0.50
...............................................................................................................................................................GTTGTGTAGATGAGAGGAAA.......................................................................2011.0070.00---1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................TGTCCTCGGGTTGTGTAGATGAGAGGAT........................................................................2811.001.00------------------------------------------------------------------------------1.00------------------
..................................................................................................................................................................................GCCGTCCGGGCTGCGGGTTCCCCGGG..............................................2611.001.00-----------------------------------------------------------------1.00-------------------------------
...................................................................................................................................................AGATGTCCTCGGGTTGTGTAGATGA..............................................................................2511.001.00-----1.00-------------------------------------------------------------------------------------------
....................................................................................................................................TCTGGGAGCTGAGGGAGATGT.................................................................................................2111.001.001.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAG...........................................................................1811.001.00-----------------------------------------1.00-------------------------------------------------------
................................................................................................................TTGACCATGGTCCGCCGTC.......................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00-----------------
......................................................................................................................................................TGTCCTCGGGTTGTGTAGATGAGAGGATG.......................................................................2911.001.00---------------------------------------------------1.00---------------------------------------------
....................................................................................................................................................................GTAGATGAGAGGATGCCGACAT................................................................221.000.001.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................ATGTCCTCGGGTTGTG.....................................................................................1611.001.00----------------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................CCTCGGGTTGTGTAGATGAGAGGATGC......................................................................2711.001.001.00------------------------------------------------------------------------------------------------
...........TCTGCCACCTTCCTGGCCCGACGCCATGGG.................................................................................................................................................................................................................3011.001.00------------------------------------------------------------1.00------------------------------------
........................................................................................................................................................TCCTCGGGTTGTGTAGATGAGAGGATG.......................................................................2711.001.00---------------1.00---------------------------------------------------------------------------------
..............................................................................................................................................................GGTTGTGTAGATGAGAGGATG.......................................................................2111.001.00---------------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................GTTGTGTAGATGAGAGGATGCCGTC..................................................................2511.001.00-------------------------------------------------------1.00-----------------------------------------
..................................................................................................................................................GAGATGTCCTCGGGTTGTGT....................................................................................2011.001.00-----------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................CCTCGGGTTGTGTAGATGAGAGGA.........................................................................2411.001.00-----------------------------------------------------------------------------------------1.00-------
................................................................................GCTTGGAGTTGTGAAAGGC.......................................................................................................................................................1911.001.001.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CGTCCGGGCTGCGGGTTCCC..................................................2011.001.00---------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................AGATGTCCTCGGGTTGTGTA...................................................................................2011.001.00-------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................................TCGGGTTGTGTAGATGA..............................................................................1711.001.00------------------1.00------------------------------------------------------------------------------
.................................................................................................GCCGGAAAGAGGACCTTGAC.....................................................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GATGAGAGGATGCCGTC..................................................................1711.001.00-----1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAGGATGC......................................................................2411.001.00-------1.00-----------------------------------------------------------------------------------------
..................................................................................................................................................................................GCCGTCCGGGCTGCGGGT......................................................1811.001.00---------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................TGTAGATGAGAGGATGCCGTC..................................................................2111.001.00---1.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................GTAGATGAGAGGATGCCGTCCGGG..............................................................2411.001.001.00------------------------------------------------------------------------------------------------
.................................................................................................................................................GGAGATGTCCTCGGGTTGTGTAGATGAG.............................................................................2811.001.00---------------------------------1.00---------------------------------------------------------------
.........................................................................................................................................GAGCTGAGGGAGATGTCCTCG............................................................................................2111.001.00--------------------------------------------------------------------------1.00----------------------
................................................................................................................................................GGGAGATGTCCTCGGGT.........................................................................................1711.001.00----1.00--------------------------------------------------------------------------------------------
..................................................................................................................................CCTCTGGGAGCTGAGGGAG.....................................................................................................1911.001.00---------------------------------------1.00---------------------------------------------------------
........................................................................................................................................................TCCTCGGGTTGTGTAGATGAGAGGATGCC.....................................................................2911.001.00------------------------------------------1.00------------------------------------------------------
....................................................................................................................................................GATGTCCTCGGGTTGTGTAGATGAGA............................................................................2611.001.001.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GCTTGTTTCCTCAGAGATG............................1911.001.00-----------------------------------------------------------------------1.00-------------------------
..........................................................................................................................................................CTCGGGTTGTGTAGATGAGAGGATGCC.....................................................................2711.001.00--------------------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................TCCGGGCTGCGGGTTCCC..................................................1811.001.00--------------------------------------------------1.00----------------------------------------------
........................................................................................................................................................................................CGGGCTGCGGGTTCCCCGGG..............................................2011.001.00---------------------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................GAGAGGATGCCGTCCGGG..............................................................1811.001.00--------------------------------------------------------------------------------------1.00----------
..........................................................................................................................................................................GAGAGGATGCCGTCCGGGCTG...........................................................2111.001.00-----------------1.00-------------------------------------------------------------------------------
........................................................................................................................................................TCCTCGGGTTGTGTAGATGAG.............................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................GGGTTGTGTAGATGAGAGGATG.......................................................................2211.001.00---------------------------------------------1.00---------------------------------------------------
.................................................................................................GCCGGAAAGAGGACCTTGA......................................................................................................................................1911.001.00---------------------------------------------------------------------1.00---------------------------
...........................................................................................................................................................TCGGGTTGTGTAGATGAGAGGATGCCGT...................................................................2811.001.00------------------------------1.00------------------------------------------------------------------
...........................................................................................................................................................TCGGGTTGTGTAGATGAGAGGATGCC.....................................................................2611.001.00----------------------------------------------1.00--------------------------------------------------
......................................................................................................................................................................................TCCGGGCTGCGGGTTCC...................................................1711.001.00-----1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................GATGTCCTCGGGTTGTGTAGATGAGAGG..........................................................................2811.001.00-----1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................CGGGTTGTGTAGATGAGAGGATGCC.....................................................................2511.001.00-------------------------1.00-----------------------------------------------------------------------
.................................................................................................................................................GGAGATGTCCTCGGGTTGTGTAGATGAGTT...........................................................................3011.001.00--------------------1.00----------------------------------------------------------------------------
................................CGCCATGGGAGTGACTTGGTAGGA..................................................................................................................................................................................................2411.001.00-------------------------------------------------------------------1.00-----------------------------
................................................................................................................................................GGGAGATGTCCTCGGGTTGTGTAGATGA..............................................................................2811.001.00-----------------------------------------------------------------------------------1.00-------------
................................................................................................................................................................TTGTGTAGATGAGAGGG.........................................................................171.000.00-----1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................GTAGATGAGAGGATGCCGTC..................................................................2011.001.001.00------------------------------------------------------------------------------------------------
...............................................TTGGTAGGACTGCAGGGGGT.......................................................................................................................................................................................2011.001.00----------------------------1.00--------------------------------------------------------------------
..................................................GTAGGACTGCAGGGGGTT......................................................................................................................................................................................1811.001.00--------------------1.00----------------------------------------------------------------------------
.........................................AGTGACTTGGTAGGACTGC..............................................................................................................................................................................................1911.001.00-----------------------1.00-------------------------------------------------------------------------
............................................................................CGGGGCTTGGAGTTGTGATGT.........................................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00------
.................................................................................................................................................................TGTGTAGATGAGAGGATGCCG....................................................................2111.001.00---1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................TTGTGTAGATGAGAGGAT........................................................................1820.500.50-----------------------------------------------------------------------------------------------0.50-
.............................................................................................................................................................GGGTTGTGTAGATGAGA............................................................................1720.500.50----0.50--------------------------------------------------------------------------------------------

Antisense strand
TACTGTGTGATTCTGCCACCTTCCTGGCCCGACGCCATGGGAGTGACTTGGTAGGACTGCAGGGGGTTTTGTGGGGCGGGGCTTGGAGTTGTGAAAGGCCGGAAAGAGGACCTTGACCATGGTCCGCCGTCCTCTGGGAGCTGAGGGAGATGTCCTCGGGTTGTGTAGATGAGAGGATGCCGTCCGGGCTGCGGGTTCCCCGGGCTTGTTTCCTCAGAGATGCGCCCCTTCCTCTTGGAAGGCGGGAAAG
.............................................................................................................................................................(((...(((((......((((...))))...)))))....)))..................................................
..........................................................................................................................................................155..........................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
...............................................................................................................CTTGACCATGGTCCGCACC........................................................................................................................ 191.000.00---------------------------------------------------------------------------------------1.00---------
...............................................................................................................GCGGACCATGGTCAAG........................................................................................................................... 1620.500.50----------------------------------------------------------------------------------------------0.50--