| (3) B-CELL | (2) BRAIN | (5) BREAST | (14) CELL-LINE | (1) HEART | (1) HELA | (1) KIDNEY | (3) LIVER | (1) OTHER | (5) SKIN | (1) XRN.ip |
| TACTTGGTTTTCTTTTCTTTTCAGTCAGTACTGCTCCCCAGCCTAAACCAGTAAGTATAAGGTGTTTTTATATTTAATTTTGATCTATGGACTATGGGCATGGGTTCTTCTGTTGTGGATGGTAACAGTTTGTTTCAAGTTTGAGAACCAAAAGGAAAAAAAATTCCTGCGCTTCTATAATTTTCTCCAGTAAATTCCCATGCACCTTCATCACATTTGTACTGGTGAGGCCTCTAAAAAATTCGAGTTTGTCTGAATGTAAACCAACCCCACGGACTGCTCAGAAGACCACACTTTGTTATTTATTCTGTTTTTATTTGGGTTTATAAGAGTATCCCGCATCTTTTAATTTAATGAAAGACTTAAGTGCTATGTTAGGGAAAGATTTGTGAAATTTAATTAGGAAGTAATTAAAGTTAACAACTATCTCCAACTGGGGGTAATTAATTAGCCACCTGAAGGCTTTATCTGTTTGTAATCTCCGCCCAGGCTGACAAAATGTCAAAGAATAAGAAGAAGAAATTGAAGAAGAAGCAGAA .................................................................................................................................................................................................................................................(((((((..(((((...((......))....))))).)))).)))............................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................240........................................................................315.............................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189784 | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207117(GSM721079) Whole cell RNA. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR189785 | SRR444048(SRX128896) Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin) | TAX577739(Rovira) total RNA. (breast) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR343335 | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | TAX577745(Rovira) total RNA. (breast) | SRR191594(GSM715704) 70genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................GAGTTTGTCTGAATGTAA..................................................................................................................................................................................................................................................................................... | 18 | 1 | 14.00 | 14.00 | 14.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................ACCACACTTTGTTATTTATTCCGT.................................................................................................................................................................................................................................... | 24 | 3.00 | 0.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................................................................................TTATTCTGTTTTTATTTGGG......................................................................................................................................................................................................................... | 20 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................ACCCCACGGACTGCTCAGAAGACCA........................................................................................................................................................................................................................................................ | 25 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................ACCACACTTTGTTATTTATTCTGT.................................................................................................................................................................................................................................... | 24 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TGTGGATGGTAACAGTTTTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................GTCAGTACTGCTCCCCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................TAATTTTGATCTATGGACTATGGGCATCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...TTGGTTTTCTTTTCTTTTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................TGAGAACCAAAAGGAACG............................................................................................................................................................................................................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................ACCCCACGGACTGCTCAGAAGACCACACTTC.................................................................................................................................................................................................................................................. | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................TACTGCTCCCCAGCCTAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................ATGGGCATGGGTTCTTCTGTTGTGGATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................ | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................CCCACGGACTGCTCAGAAGACCATA...................................................................................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................ACTGGTGAGGCCTCTAAAAAATTCGAG.................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TTGGTTTTCTTTTCTTTTCGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................TGATCTATGGACTATGGGCACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAAGAAGCAGATCA | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...TTGGTTTTCTTTTCTTTTATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATTGAAGAAGAAGTGGG. | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAAGAAGAAATTGAAGAAGAAGCAGAA | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................TTGATCTATGGACTATGGGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATAAGAAGAAGAAATTG.............. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................AACCCCACGGACTGCTCAGAAGACCACA...................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................GTTATTTATTCTGTTTTTATTTGGGC........................................................................................................................................................................................................................ | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTCAAGTTTGAGAGTG...................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................AACCAAAAGGAAAAAACAA....................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................ATTTATTCTGTTTTTATTTGGGTTTATAAGAG............................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................TTATTTATTCTGTTTTAAC.............................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAATTGAAGAAGAAGCAGA. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAAGAAGAAGCAGAA | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................ACCAACCCCACGGACTGCTCAGAAGA........................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GTCAGTACTGCTCCCCAGCCTAAACCAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAATTGAAGAATTTG..... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGAAGAAGAAGC.... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................CCAACCCCACGGACTGCTCAGAAGAC.......................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTATCTGTTTGTAATCTCCG....................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................AACCCCACGGACTGCTCAGAAGACCACACCTTG................................................................................................................................................................................................................................................. | 33 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................................ACACTTTGTTATTTATTCTGTTTTTATTTGGG......................................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TTCTCCAGTAAATTCCCATGCA............................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................ACCCCACGGACTGCTCAGAAGACC......................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................GTAAGTATAAGGTGTTTTTATATTTAATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........CTTTTCTTTTCAGTCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..CTTGGTTTTCTTTTCTTTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................TGGGCATGGGTTCTTCTGTTGTGGACGGT................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................AGGTGTTTTTATATTTAATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................TAATTTTGATCTATGGACTATGGGCATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........CTTTTCTTTTCAGTCGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ............................................................................................TATGGGCATGGGTTCTTCTGTTGTGGACGG................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................AAGTTTGAGAACCAAAAGGAAAAAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................ATCTATGGACTATGGGCATGGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................GTTATTTATTCTGTTTTTATTTGGGTT....................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTCAAAGAATAAGAAGAAGAAATTGA............. | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................AGTCAGTACTGCTCCCCAGCCTAAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................TAATTTTGATCTATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGAAGAAGAAG..... | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATCTCCAACTG....................................................................................................... | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TACTTGGTTTTCTTTTCTTTTCAGTCAGTACTGCTCCCCAGCCTAAACCAGTAAGTATAAGGTGTTTTTATATTTAATTTTGATCTATGGACTATGGGCATGGGTTCTTCTGTTGTGGATGGTAACAGTTTGTTTCAAGTTTGAGAACCAAAAGGAAAAAAAATTCCTGCGCTTCTATAATTTTCTCCAGTAAATTCCCATGCACCTTCATCACATTTGTACTGGTGAGGCCTCTAAAAAATTCGAGTTTGTCTGAATGTAAACCAACCCCACGGACTGCTCAGAAGACCACACTTTGTTATTTATTCTGTTTTTATTTGGGTTTATAAGAGTATCCCGCATCTTTTAATTTAATGAAAGACTTAAGTGCTATGTTAGGGAAAGATTTGTGAAATTTAATTAGGAAGTAATTAAAGTTAACAACTATCTCCAACTGGGGGTAATTAATTAGCCACCTGAAGGCTTTATCTGTTTGTAATCTCCGCCCAGGCTGACAAAATGTCAAAGAATAAGAAGAAGAAATTGAAGAAGAAGCAGAA .................................................................................................................................................................................................................................................(((((((..(((((...((......))....))))).)))).)))............................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................240........................................................................315.............................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189784 | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207117(GSM721079) Whole cell RNA. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR189785 | SRR444048(SRX128896) Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin) | TAX577739(Rovira) total RNA. (breast) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR343335 | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | TAX577745(Rovira) total RNA. (breast) | SRR191594(GSM715704) 70genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................................TTGTCTGAATGTAAATGC................................................................................................................................................................................................................................................................................. | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................AATTTTCTCCAGTAAAGAA...................................................................................................................................................................................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................AAAAATTCCTGCGCTGT............................................................................................................................................................................................................................................................................................................................................................................ | 17 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................AACCAAAAGGAAAAAAAATGGG.................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAAGTAATTAAAGTTATG...................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGAAGATCA....... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................CAACCCCACGGACTGTGT................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................TAAGTGCTATGTTAGGCTAT............................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .........................................................TAAGGTGTTTTTATACTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................CAAAAGGAAAAAAAATCCGG................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATAAGAAGAAGAAATCAT............. | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAAGAAGAAATACG............. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................AACCAAAAGGAAAAAAGGG....................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................GTTTGTTTCAAGTTTAATA......................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................AAAAAAAATTCCTGCATTC............................................................................................................................................................................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .............................................................................................................................................................................................................................................................TGAATGTAAACCAACTTTG........................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |