ID: uc011drk.1_intron_30_0_chr6_33647911_f
GENE: (31)
chr6:33647861-33648155+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(8)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(25)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGCTGGAGGACGTGGTGTCTGTGGTGACGCATGAGGACTGCATCACTGAGGTGGGGATCGGGAGACTGGGCAAGACGGCTGGAGATGGGGCGAAGGGGTGGGTAAAGCCACGGGACAGGAAGAGTGGGTGAAGCAAAGCCAGGGAAGTGGGCAGGAACCGGAGGCCAGGGGACAGGAGCATTGTGGCAGGGAGAGCCTGGCCAGGCGGCCCTGCTTGCGCCCCTGACCTCCCGCCCACTGCCCAGGTGAAAATGGCCTATGTGAACTTCGTGAACCACTGCTACGTGGACACGGA
...................................................................................................................................................(((((((.....(((((.((((((......(((....(((((((...((((....))))..)))))))))).)))))).)))))......)))))))...................................................
..............................................................................................................................................143...................................................................................................245................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR038863(GSM458546)
MM603. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................TGGGCAGGAACCGGAGGCC.................................................................................................................................1918.008.00-4.00--2.00----1.00------------------------------1.00-------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGGT............................................................................................................................2416.003.00---2.00-----1.00---1.00-----1.00------------------------1.00---------------------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGCCCAGA.................................................2315.002.001.00-----------------------1.00---------1.00-----------1.00---------------1.00---------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAG...............................................................................................................................2115.005.002.00----2.00-1.00----------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGT..............................................................................................................................2215.005.004.00-------------------------------------------------1.00---------------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGCCCAGT.................................................2314.002.004.00-----------------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGAT.............................................................................................................................2313.005.00--3.00---------------------------------------------------------------------
.................................AGGACTGCATCACTGAG.....................................................................................................................................................................................................................................................1713.003.00-----------------1.00-----------1.00------------------------------1.00-----------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCATC..............................................................................................................................2213.002.00------3.00-----------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGG.............................................................................................................................2313.003.00-------1.00--1.00----------------------------------------1.00--------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGG..............................................................................................................................2212.002.00-------------1.00---------------------------------------------1.00------------
.................................AGGACTGCATCACTGAGGTGAAA...............................................................................................................................................................................................................................................232.000.00------------2.00-----------------------------------------------------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGCCCAG..................................................2212.002.002.00-----------------------------------------------------------------------
......AGGACGTGGTGTCTGTGGTGACGC.........................................................................................................................................................................................................................................................................2412.002.00---------------2.00--------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCA................................................................................................................................2012.002.00-----------------1.00-------------------1.00----------------------------------
..................................................................................................................................................GTGGGCAGGAACCGGAGGCCAGGGT............................................................................................................................251.000.00----------------------------1.00-------------------------------------------
..................................................................................................................................................GTGGGCAGGAACCGGAGGCCAGGGGAC..........................................................................................................................2711.001.00---------------------------1.00--------------------------------------------
..................................................GTGGGGATCGGGAGACTGG..................................................................................................................................................................................................................................1911.001.00-----------1.00------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCATAT.............................................................................................................................2311.002.00----------------------------------------------------------------1.00-------
............TGGTGTCTGTGGTGACGCATGAGGAC.................................................................................................................................................................................................................................................................2611.001.00-----------------------------------------------1.00------------------------
......................................................................CAAGACGGCTGGAGATG................................................................................................................................................................................................................1711.001.00----------------1.00-------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGGGACAGGAGCAT..................................................................................................................3411.001.00--------1.00---------------------------------------------------------------
..................................................GTGGGGATCGGGAGACTGGGCAAGACGGCTG......................................................................................................................................................................................................................3111.001.00---------------------1.00--------------------------------------------------
.................................................................................................................................................................AGGCCAGGGGACAGGAGCAGCCC...............................................................................................................231.000.00-------------------------------------------1.00----------------------------
...................................................................................................................................................TGGGCAGGAACCGGAAAAG.................................................................................................................................191.000.00--------------------------------------------------------1.00---------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGTT.....................................................191.000.00---1.00--------------------------------------------------------------------
..............................ATGAGGACTGCATCACTGAGGTGAAA...............................................................................................................................................................................................................................................261.000.00-----------------------------------------------------------------1.00------
........................................................................................................................................................AGGAACCGGAGGCCAGTT.............................................................................................................................181.000.00------------------------------------------------------1.00-----------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGA..............................................................................................................................2211.005.00--------------1.00---------------------------------------------------------
................................................................................................................................................................................AGCATTGTGGCAGGGTCC.....................................................................................................181.000.00------------------------------------------1.00-----------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGAGA...........................................................................................................................2511.002.00----------1.00-------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGTAAT..........................................................................................................................2611.002.00-----1.00------------------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGC..................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------
............................................................................................................................................AGGGAAGTGGGCAGGCCG.........................................................................................................................................181.000.00--------1.00---------------------------------------------------------------
................GTCTGTGGTGACGCATGATG...................................................................................................................................................................................................................................................................201.000.00-----------------------------------------1.00------------------------------
....................GTGGTGACGCATGAGGACTGCA.............................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------------1.00-------------
..............................ATGAGGACTGCATCATCT.......................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------1.00--------------
......................................................................................................................................AAAGCCAGGGAAGTGTGTG..............................................................................................................................................191.000.00---------------------------------------------------------------1.00--------
....................................................................................................................................................................................................................................................................................ACTGCTACGTGGACAC...1611.001.00-------------------------------------------------------------1.00----------
..................................................................................................................................................GTGGGCAGGAACCGGAGGCCAGGGTT...........................................................................................................................261.000.00----------------------------------------------------1.00-------------------
..................................................................................................................................................GTGGGCAGGAACCGGAGGCCAG...............................................................................................................................2211.001.00---------------------------------1.00--------------------------------------
...................................................................................GATGGGGCGAAGGGGTGG..................................................................................................................................................................................................1811.001.00----------------------1.00-------------------------------------------------
...................................GACTGCATCACTGAGGT...................................................................................................................................................................................................................................................1711.001.00----------------1.00-------------------------------------------------------
..............................ATGAGGACTGCATCATCAA......................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00---------------------------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGAAA....................................................201.000.00--------------------1.00---------------------------------------------------
................................GAGGACTGCATCACTGAG.....................................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------1.00----------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGGTTT..........................................................................................................................2611.003.00-------------------------------1.00----------------------------------------
...............................TGAGGACTGCATCACTGAG.....................................................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00-----------------------
...................................................................................................................................................TGGGCAGGAACCGGAGAA..................................................................................................................................181.000.00-------------------------1.00----------------------------------------------
...................................................................................................................................................................................................................................................AGGTGAAAATGGCCTATGTGAACTTCG.........................2711.001.00--------------1.00---------------------------------------------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAGGGG............................................................................................................................2411.001.00-------------------------------------------------1.00----------------------
...................................................................................................................................................TGGGCAGGAACCGGAGGCCAA...............................................................................................................................2111.002.00-------1.00----------------------------------------------------------------
....................................................................................................................................................GGGCAGGAACCGGAGCGC.................................................................................................................................181.000.00-----------------------1.00------------------------------------------------
...............................TGAGGACTGCATCACTG.......................................................................................................................................................................................................................................................1720.500.50--------------------------------------------------------------------0.50---
............................................................................................................................................................................................GGGAGAGCCTGGCCAGG..........................................................................................1790.110.11-----------------------------------------------------------------------0.11

Antisense strand
CGCTGGAGGACGTGGTGTCTGTGGTGACGCATGAGGACTGCATCACTGAGGTGGGGATCGGGAGACTGGGCAAGACGGCTGGAGATGGGGCGAAGGGGTGGGTAAAGCCACGGGACAGGAAGAGTGGGTGAAGCAAAGCCAGGGAAGTGGGCAGGAACCGGAGGCCAGGGGACAGGAGCATTGTGGCAGGGAGAGCCTGGCCAGGCGGCCCTGCTTGCGCCCCTGACCTCCCGCCCACTGCCCAGGTGAAAATGGCCTATGTGAACTTCGTGAACCACTGCTACGTGGACACGGA
...................................................................................................................................................(((((((.....(((((.((((((......(((....(((((((...((((....))))..)))))))))).)))))).)))))......)))))))...................................................
..............................................................................................................................................143...................................................................................................245................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR038863(GSM458546)
MM603. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................CGGCCCTGCTTGCGCTTTT....................................................................... 192.000.00------------------1.00----------------1.00------------------------------------
......................................................................................TCCCGTGGCTTTACCCACCCCTTCGCCCC.................................................................................................................................................................................... 2911.001.00-----------------------------------------------------1.00------------------
.............................................................................................................................................................................................................CGGCCCTGCTTGCGCTTT........................................................................ 181.000.00------------------1.00-----------------------------------------------------
............................................................................................................................................................................................................GCGGCCCTGCTTGCGCTT......................................................................... 181.000.00------------------------------------1.00-----------------------------------
........................................................................................................................................................................................................CCAGGCGGCCCTGCTACAA............................................................................ 191.000.00-----------1.00------------------------------------------------------------
...............................................................................................................................................................................................................................TGACCTCCCGCCCACTGAG..................................................... 191.000.00---------------------------------------1.00--------------------------------
.................................................................................................................................................................................................AGCCTGGCCAGGCGGATT.................................................................................... 181.000.00------------------------------------------------------------------1.00-----
......................................................................................CTTTACCCACCCCTTCGCCCC............................................................................................................................................................................................ 2111.001.00------------------------------1.00-----------------------------------------
........................................................................................................................................................................................................................TCACCTGGGCAGTGGGCGGGAGGTCAGGGGCGC.............................................. 3311.001.00---------------------------------------------1.00--------------------------
......................................................................................ACCCACCCCTTCGCCCC................................................................................................................................................................................................ 1711.001.00--------------------------1.00---------------------------------------------
......................................................................................CCCGTGGCTTTACCCACCCCTTCGCCCC..................................................................................................................................................................................... 2811.001.00--------------------------------1.00---------------------------------------
......................................................................................CCCACCCCTTCGCCCC................................................................................................................................................................................................. 1630.670.67---------------------------------------------------------------------0.330.33-
....................................................................................................TCCCGTGGCTTTACC.................................................................................................................................................................................... 1520.500.50-------------------------------------------------------------------0.50----