ID: uc011dpn.1_intron_0_0_chr6_32149017_r
GENE: (8)
chr6:32148967-32149350-


(1)
AGO1.ip 		(1)
AGO2.ip 		(9)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(7)
LIVER 		(2)
OTHER 		(7)
SKIN 		(2)
UTERUS

Sense strand
GATAGCCCCCAACACATGTGACTGGGGGGATGGTCAACAAGAAAGGAATGGTGAGTGGTGGTGGCTGTGCTCTCAATTTTCCCTGTCTCCGTACAGGCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAGGTGAGTGGAGAAAGCCAGACCCCTCAGACCTAGGGCTTCCAGGCAGCAAGCGAAGAGGGGTCGGGGGGTGGAACGACAACGTGCCGCATTCCCCCCAATCTTTCTCCTCAGGAAGGCCCCAGAAAACCAGGAGGAAGAGGAGGAGCGTGCAGAACTGAATC
.......................................................................................................................................................................................................................(((((((((.((.(((.........((((((((.......((....))..((.....))...)))))))).((((((((.(((....))).))))...))))))).)))))))))))....................................................
...................................................................................................................................................................................................................212.............................................................................................................................340..........................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................................................................AGGAGAGGTGAGTGGAATT.....................................................................................................................................................1910.000.00--------1.001.00-1.001.00-2.002.00-----------1.00---1.00------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAACA.....................................................................................................................................................188.000.004.004.00------------------------------------------------
........................................................................................................................................................................................................................AGGAGAGGTGAGTGGAATTC....................................................................................................................................................207.000.00--------1.00-------1.00---------------1.001.001.00---1.001.00----------
.................GTGACTGGGGGGATGGTC.............................................................................................................................................................................................................................................................................................................................................................1816.006.003.003.00------------------------------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAATT.....................................................................................................................................................185.000.00-------1.00---1.00-2.00--1.00---------------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAAC......................................................................................................................................................172.000.00------------------1.00---1.00---------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAACTG....................................................................................................................................................192.000.00----1.00-----------------------------------1.00---------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAACT.....................................................................................................................................................182.000.00----1.00-------------------1.00-------------------------
.....................................................................................................GTGGGAGGATCAGGGCTGGGAACTCTG................................................................................................................................................................................................................................................................271.000.00-----------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................GGGGGGTGGAACGACAACGTGCCG...........................................................................2411.001.00------------1.00-------------------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAAT......................................................................................................................................................171.000.00-----------------------------------1.00--------------
..............................................................................................................................................................................................................................................................AGGGCTTCCAGGCAGCAGAA..............................................................................................................201.000.00------------------------------------------1.00-------
..................................................................................................................GGCTGGGAACTCTAGT..............................................................................................................................................................................................................................................................161.000.00--------------------------1.00-----------------------
........................................................................................................................................................................................................................AGGAGAGGTGAGTGGACTTC....................................................................................................................................................201.000.00------1.00-------------------------------------------
............................................................................................................................................................................................................................................GCCAGACCCCTCAGACCTAGGG..............................................................................................................................2211.001.00-----------------------------------------1.00--------
.......................................................................................................GGGAGGATCAGGGCTGGGC......................................................................................................................................................................................................................................................................191.000.00-----1.00--------------------------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAATTC....................................................................................................................................................191.000.00----------1.00---------------------------------------
.........................................................................................................................................................................................................................GGAGAGGTGAGTGGAACTC....................................................................................................................................................191.000.00----1.00---------------------------------------------
....................................................................................................................................................................................................................GGAGAGGAGAGGTGAGTG..........................................................................................................................................................1821.001.00-----------------0.50---------------------------0.50----
...................................................................................................................................................................................................................AGGAGAGGAGAGGTGCAG...........................................................................................................................................................181.000.00-----------------------1.00--------------------------
...................................................................................................................................................................................................................................................................................AAGAGGGGTCGGGGGGTGGAAC.......................................................................................2211.001.00----------------------------1.00---------------------
...........................................................................................................................................................................................................................AGAGGTGAGTGGAGACTTT..................................................................................................................................................191.000.00-------------------------------------1.00------------
....................................................................................................................................................................................................................................................................................AGAGGGGTCGGGGGGTGGAAC.......................................................................................2111.001.00-----------------------------1.00--------------------
....................................................................................................................................................................................................................................................................................AGAGGGGTCGGGGGGGCGG.........................................................................................191.000.00---------------------1.00----------------------------
.............................................................................................CAGGCTCTGTGGGAGGATCAGG.............................................................................................................................................................................................................................................................................2211.001.00-------------------------1.00------------------------
............................................................................................................................................................................................................................GAGGTGAGTGGAGAAAGGCA................................................................................................................................................201.000.00------------------------------------1.00-------------
.............ACATGTGACTGGGGGGATGGTCA............................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGAGGAGGAGCGTGCA..........2211.001.00------1.00-------------------------------------------
....................................................................GCTCTCAATTTTCCCAG...........................................................................................................................................................................................................................................................................................................171.000.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................CAATCTTTCTCCTCAGGT................................................181.000.00----------1.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................TTCCCCCCAATCTTTCTCCTCAG..................................................2311.001.00--1.00-----------------------------------------------
........................................................................................................................................................................................................................AGGAGAGGTGAGTGGAACTC....................................................................................................................................................201.000.00-------1.00------------------------------------------
........................................................................................................................................................................................................................AGGAGAGGTGAGTGGAAT......................................................................................................................................................181.000.00---------1.00----------------------------------------
.............................................................................................CAGGCTCTGTGGGAGGAT.................................................................................................................................................................................................................................................................................1820.500.50-------------------0.50------------------------------
.............................................................................................................................................................................................................ACGCCGAGGAGAGGAGAG.................................................................................................................................................................1820.500.50--------------------------------------------0.50-----
..............................................................................................AGGCTCTGTGGGAGGA..................................................................................................................................................................................................................................................................................1680.380.38------------------0.25-----------------------------0.12-
..................................CAACAAGAAAGGAATG..............................................................................................................................................................................................................................................................................................................................................1630.330.33-----0.33--------------------------------------------
.........................................AAAGGAATGGTGAGTGG......................................................................................................................................................................................................................................................................................................................................1740.250.25-----------------------------------------------0.25--
.............................................................................................CAGGCTCTGTGGGAGGA..................................................................................................................................................................................................................................................................................1740.250.25------------------0.25-------------------------------
............................................................................................................GATCAGGGCTGGGAAC....................................................................................................................................................................................................................................................................1640.250.25----------------------------------------------0.25---
..............................................................................................................................................................................................................................................................................................................................................................CAGGAGGAAGAGGAGGAGC...............1940.250.25-----------------0.25--------------------------------

Antisense strand
GATAGCCCCCAACACATGTGACTGGGGGGATGGTCAACAAGAAAGGAATGGTGAGTGGTGGTGGCTGTGCTCTCAATTTTCCCTGTCTCCGTACAGGCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAGGTGAGTGGAGAAAGCCAGACCCCTCAGACCTAGGGCTTCCAGGCAGCAAGCGAAGAGGGGTCGGGGGGTGGAACGACAACGTGCCGCATTCCCCCCAATCTTTCTCCTCAGGAAGGCCCCAGAAAACCAGGAGGAAGAGGAGGAGCGTGCAGAACTGAATC
.......................................................................................................................................................................................................................(((((((((.((.(((.........((((((((.......((....))..((.....))...)))))))).((((((((.(((....))).))))...))))))).)))))))))))....................................................
...................................................................................................................................................................................................................212.............................................................................................................................340..........................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................................................................................................................................TCTTTCTCCTCAGGAGCGT............................................ 191.000.00------------------------------1.00-------------------
................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGAGGAGGAGCGTGCAGAACTGCGG. 311.000.00--------------------1.00-----------------------------
...................................................................................TGTCTCCGTACAGGCTAA........................................................................................................................................................................................................................................................................................... 181.000.00---1.00----------------------------------------------
................................................................................................................................................................................................................CCGAGGAGAGGAGAGGATT............................................................................................................................................................. 191.000.00-----1.00--------------------------------------------
....................................................................................GTCTCCGTACAGGCTTAT.......................................................................................................................................................................................................................................................................................... 181.000.00---1.00----------------------------------------------
....................................................................................GTCTCCGTACAGGCTTTT.......................................................................................................................................................................................................................................................................................... 181.000.00---1.00----------------------------------------------
........................................................................................................................................................................................................................................................................................GGGTCGGGGGGTGGAATC...................................................................................... 181.000.00--1.00-----------------------------------------------
....................................................................................................................................................................CCAATGAGCAGGGCGGC........................................................................................................................................................................................................... 1720.500.50-------------------------------------------0.50------
.....................................................................................................................................CCCAGGATCCCCAGGGCC......................................................................................................................................................................................................................................... 1830.330.33--------------------0.33-----------------------------
.........................................................................................................................................................CGGCTGTCCCCAGGC........................................................................................................................................................................................................................ 1590.110.11-------------------------------------------------0.11