ID: uc011dmk.1_intron_4_0_chr6_30520340_r.3p
GENE: (1)
chr6:30520290-30520539-


(1)
AGO2.ip 		(9)
B-CELL 		(4)
BRAIN 		(3)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(8)
LIVER 		(3)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCAGAGGGTGCCAGTTACATAATCTGTGCAGGGCACAGTATGTGCCATCATGCACAGCAGCCCTGGGGAGAACCTCTTTAATCTTCTCCTTCTTTGAGCAGTGGACTTGAGCAGCTGGCGGGAGAAGATTGCTCGGGATGTGGCTGGGGCCACCTGGGGTAATGGCTCTGGGGAGGAGGAGGAAGAGGAGGATGGCCCAGCAGTCCTGGTGGAGCAGCAGACTGATTCAGCAATGGAGCCAACTGGCCCA
........................................................................................................................((((...(((((((.((..(((((....))))))).)))))))..)))).................................................................................
..................................................................................................................115.......................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................GGGAGAAGATTGCTCGGGA................................................................................................................1915.005.004.00---------------------1.00----------------------------------------
........................................................................................................................................................................TGGGGAGGAGGAGGAAG.................................................................1705.005.00-----2.00----------------------1.00----1.00------1.00----------------------
........................................................................................................................GGAGAAGATTGCTCGGGA................................................................................................................1814.004.002.00-----1.00-----1.00--------------------------------------------------
.............................................................................................................AGCAGCTGGCGGGAGAAGATTG.......................................................................................................................2212.002.00------------1.00--1.00-----------------------------------------------
................................................................................................................AGCTGGCGGGAGAAGATT........................................................................................................................1812.002.00-------------2.00-------------------------------------------------
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGATGAAAA....................................................2672.000.29---------2.00-----------------------------------------------------
....................................................................................................GTGGACTTGAGCAGCTGGCGGGAGAAGA..........................................................................................................................2812.002.00--2.00------------------------------------------------------------
...........................................................................................................................................................................................................TCCTGGTGGAGCAGCAGACT...........................2012.002.00--------------2.00------------------------------------------------
.....................................................................................................................................................................................................CAGCAGTCCTGGTGGAGCA..................................1912.002.00------2.00--------------------------------------------------------
......................................................................................................................CGGGAGAAGATTGCTCGGGA................................................................................................................2012.002.001.00---------------------------------1.00----------------------------
.......................................................................................................................................................................................AGAGGAGGATGGCCCAGCAGTCCTGGCG.......................................282.000.00-2.00-------------------------------------------------------------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATGACG.....................................................2472.001.71-2.00-------------------------------------------------------------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATG........................................................2171.711.71----------------0.43------------------------------------0.57-0.140.290.14---0.14-
....................................................................................................................................................................................................CCAGCAGTCCTGGTGGAGCAGCAG..............................2411.001.00--1.00------------------------------------------------------------
................................................................................................................................................................................AGGAGGAAGAGGAGGATGGCCCAGCAGCCC............................................301.000.00-1.00-------------------------------------------------------------
............................................................................................................................................................GGGTAATGGCTCTGGGGAGGAGGAGG....................................................................2611.001.00-------------------------1.00-------------------------------------
..............................................................................................................................................................................GGAGGAGGAAGAGGAGGATGG.......................................................2121.001.00----------------------------------------------------0.50-0.50--------
...................................................................................................................TGGCGGGAGAAGATTGCTC....................................................................................................................1911.001.00--------------------------------1.00------------------------------
...............................................................................................................................................................TAATGGCTCTGGGGAGGAGGATA....................................................................231.000.00---------------------------------------------1.00-----------------
..............................................................................................................................................................GTAATGGCTCTGGGGAAG..........................................................................181.000.00----------------------------------------------1.00----------------
.........................................................................................................................................................................................AGGAGGATGGCCCAGCAGTCCGG..........................................231.000.00-1.00-------------------------------------------------------------
.....................................................................................................TGGACTTGAGCAGCTGGCGGGAGA.............................................................................................................................2411.001.00-----------1.00---------------------------------------------------
..........................................................................................................................................................TGGGGTAATGGCTCTGGG..............................................................................1811.001.00---1.00-----------------------------------------------------------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATGG.......................................................2211.001.00----------------1.00----------------------------------------------
...................................................................................................AGTGGACTTGAGCAGCTGGCGGGAGAAGATTGC......................................................................................................................3311.001.00-----------1.00---------------------------------------------------
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGATGGCCCA...................................................2711.001.00---------------------------1.00-----------------------------------
......................................................................................................................CGGGAGAAGATTGCTCGG..................................................................................................................1811.001.00--------------------------1.00------------------------------------
.....................................................................................................................................................CCACCTGGGGTAATGGCTCTGGGGA............................................................................2511.001.00-------------------------------------1.00-------------------------
......................................................................................................................................GGGATGTGGCTGGGGCCACCTGGGG...........................................................................................2511.001.00---1.00-----------------------------------------------------------
....................................................................................................GTGGACTTGAGCAGCTGGAG..................................................................................................................................201.000.00-------------------------------1.00-------------------------------
..................................................................................................................................................................TGGCTCTGGGGAGGAGGTG.....................................................................191.000.00-----------------------------------------1.00---------------------
.........................................................................................................................GAGAAGATTGCTCGGGATGTG............................................................................................................2111.001.00----------1.00----------------------------------------------------
...........................................................................................................................................................................................GAGGATGGCCCAGCAGTCCTGGTGGAGC...................................2811.001.00----1.00----------------------------------------------------------
..........................................................................................................................................TGTGGCTGGGGCCACGG...............................................................................................171.000.00-1.00-------------------------------------------------------------
................................................................................................AGCAGTGGACTTGAGCAGCTGGCGGGATAAG...........................................................................................................................311.000.00---1.00-----------------------------------------------------------
.................................................................................................................................................................ATGGCTCTGGGGAGGAGGAGGAAGAGGAGG...........................................................3011.001.00----1.00----------------------------------------------------------
....................................................................................................................................................................................................................AGCAGCAGACTGATTG......................161.000.00---------------------1.00-----------------------------------------
.................................................................................................................................................GGGGCCACCTGGGGTAATGGA....................................................................................211.000.00--------------------------------------1.00------------------------
.......................................................................................................................GGGAGAAGATTGCTCGGG.................................................................................................................1811.001.00------------------------------------1.00--------------------------
.................................................................................................................................TGCTCGGGATGTGGCTGGGGC....................................................................................................2111.001.00-------1.00-------------------------------------------------------
...............................................................................................................................................................TAATGGCTCTGGGGAGGAAA.......................................................................201.000.001.00--------------------------------------------------------------
........................................................................................................................GGAGAAGATTGCTCGGGAT...............................................................................................................1911.001.00-----------------------------1.00---------------------------------
............................................................................................................................AAGATTGCTCGGGATGTGGCTGGGGGGG..................................................................................................281.000.00-1.00-------------------------------------------------------------
.................................................................................................................................................................................GGAGGAAGAGGAGGATGGCCCAGCA................................................2511.001.00--1.00------------------------------------------------------------
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGATTTT......................................................2471.000.29---------------------------------------1.00-----------------------
.................................................................................................................................................................................GGAGGAAGAGGAGGATGTAG.....................................................201.000.00---1.00-----------------------------------------------------------
...............................................................................................................................................................................................ATGGCCCAGCAGTCCTGGTGGAGCAGCGA..............................291.000.00----1.00----------------------------------------------------------
.................................................................................................................................TGCTCGGGATGTGGCTGGGGG....................................................................................................211.000.00-------1.00-------------------------------------------------------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATGTCA.....................................................2471.001.71--------1.00------------------------------------------------------
....................................................................................................GTGGACTTGAGCAGCGCGG...................................................................................................................................191.000.00--------------------------------------------1.00------------------
..............................................................................................................................................................................GGAGGAGGAAGAGGAGGATGT.......................................................211.000.00-----------------------1.00---------------------------------------
.....................................................................................................TGGACTTGAGCAGCTGGCG..................................................................................................................................1911.001.00------------------------------1.00--------------------------------
...........................................................................................................................................................................GGAGGAGGAGGAAGAGGAGGATA........................................................231.000.00------------------1.00--------------------------------------------
......................................................................................................................................................................................................................CAGCAGACTGATTCAGCAATGGAG............2411.001.00-------------------------------------------1.00-------------------
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGATT........................................................2271.000.29--------------------1.00------------------------------------------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATGGT......................................................2311.001.00-----------------1.00---------------------------------------------
...................................................................................................................................................................................AGGAAGAGGAGGATGGTT.....................................................181.000.00--------1.00------------------------------------------------------
.......................................................................................................................................................................................................................AGCAGACTGATTCAGCAATGGAGCC..........2511.001.00---------------------------------------------------1.00-----------
...................................................................................................................................................................................................CCCAGCAGTCCTGGTGGAGCAGCAG..............................2511.001.00-1.00-------------------------------------------------------------
........................................................................................................................................................................TGGGGAGGAGGAGGAA..................................................................1601.001.00-----1.00---------------------------------------------------------
......................................................................................................................................................................................................AGCAGTCCTGGTGGAGCA..................................1811.001.001.00--------------------------------------------------------------
.................................................................................................................GCTGGCGGGAGAAGATTGC......................................................................................................................1911.001.00------------------------------------------1.00--------------------
.................................................................................................................................................GGGGCCACCTGGGGTGCCA......................................................................................191.000.00------------------------1.00--------------------------------------
........................................................................................................................................................................................................CAGTCCTGGTGGAGCAGCAGA.............................2111.001.00-------------------------------------------------1.00-------------
.........................................................................................................................................ATGTGGCTGGGGCCACGG...............................................................................................181.000.00----1.00----------------------------------------------------------
......................................................................................................................................................................................AAGAGGAGGATGGCCCAGCAG...............................................2111.001.00--------------------------------------------------1.00------------
..................................................................................................CAGTGGACTTGAGCAGCTGGCGGGAGAAGAT.........................................................................................................................3111.001.00------------------------------------------------1.00--------------
...........................................................................................................................GAAGATTGCTCGGGATGT.............................................................................................................1811.001.00----------1.00----------------------------------------------------
...........................................................................................................................GAAGATTGCTCGGGATGTGGCTGGGG.....................................................................................................2611.001.00--1.00------------------------------------------------------------
...............................................................................................................................................................................................................GGTGGAGCAGCAGACTGATT.......................2021.001.00--1.00------------------------------------------------------------
...................................................................................................................................CTCGGGATGTGGCTGGGG.....................................................................................................1820.500.50---------------0.50-----------------------------------------------
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGAT.........................................................2170.290.29-----------------------------------------------------------0.140.14--
............................................................................................................................................................................GAGGAGGAGGAAGAGGAGGATG........................................................2270.290.29-----------------0.14----------------------------------------0.14----
.......................................................................................................................................................................CTGGGGAGGAGGAGGAAGAGGA.............................................................2240.250.25-------------------------------------------------------0.25-------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGATA........................................................2180.250.12------------------0.12---------------------------------0.12----------
.............................................................................................................................................................................AGGAGGAGGAAGAGGAGGAT.........................................................2080.120.12--------------------------------------------------------------0.12

Antisense strand
CCAGAGGGTGCCAGTTACATAATCTGTGCAGGGCACAGTATGTGCCATCATGCACAGCAGCCCTGGGGAGAACCTCTTTAATCTTCTCCTTCTTTGAGCAGTGGACTTGAGCAGCTGGCGGGAGAAGATTGCTCGGGATGTGGCTGGGGCCACCTGGGGTAATGGCTCTGGGGAGGAGGAGGAAGAGGAGGATGGCCCAGCAGTCCTGGTGGAGCAGCAGACTGATTCAGCAATGGAGCCAACTGGCCCA
........................................................................................................................((((...(((((((.((..(((((....))))))).)))))))..)))).................................................................................
..................................................................................................................115.......................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................TTGAGCAGCTGGCGGTGG.............................................................................................................................. 181.000.00-----------------------------------1.00---------------------------
.................................................................................................................................................CCCAGAGCCATTACCCCAGGTGGCCCC.............................................................................. 2711.001.00-----------------------------------------------1.00---------------
........................................................................................................................................................................TGGGGAGGAGGAGGAAGAGGAGGATCTT...................................................... 281.000.00-------------------1.00-------------------------------------------