ID: uc011djo.1_intron_10_0_chr6_24572927_r.3p
GENE: (10)
chr6:24572877-24573126-


(2)
AGO2.ip
(4)
BRAIN
(2)
BREAST
(9)
CELL-LINE
(1)
FIBROBLAST
(3)
HEART
(2)
OTHER
(3)
SKIN

Sense strand
AGTGATCCACCTGCCTTGGCCTCCTAAAGTGCTGGGATTACAGATGTGAACCACCGTGCCTGGCCAAACACATTTCTTTTTTGAGCAAGATCTCTGTATTAAGTAAAATTGTTAGTTTTTCATTCTGTCATACTATTTACTTGTGCTTCTTTACTTTTTTGTTTTGTTTTGTTTTTATTTTTGTATTTGCTATTACTTAGGGAGTACAGACGCCATACCTTCATTTATCTGCAATGCAGGAAGGAGATTA
.............................................................(((.(((((............((((((((.....(((..(((((.......((((....((...))....))))........)))))...)))..))))))))))))).))).............................................................................
............................................................61......................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTGGG........................................................................267.000.007.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTGGGT.......................................................................277.000.006.001.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTCTT........................................................................265.000.002.003.00----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTCTGC.........................................................................244.000.001.003.00----------------------
.................................GGGATTACAGATGTGAACTCTG...................................................................................................................................................................................................224.000.00----2.001.00-------------1.00----
.................................................................AAACACATTTCTTTTTCAAG.....................................................................................................................................................................204.000.00--4.00---------------------
.......................................................................................................................................................TACTTTTTTGTTTTGTTTTGTTTTGGG........................................................................273.000.003.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTGTG.........................................................................253.000.003.00-----------------------
.......................................................................................................................................................TACTTTTTTGTTTTGTTTTGTTTTGGCG.......................................................................282.000.00-2.00----------------------
................................................................................................................TAGTTTTTCATTCTGTCGTTT.....................................................................................................................212.000.00------2.00-----------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCCC.........................................................................252.000.00-2.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTTCA.......................................................................272.000.00-2.00----------------------
...............................................................................................................................................................TGTTTTGTTTTGTTTTTATTTACT...................................................................242.000.00-2.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTATTG.........................................................................252.000.00-2.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTTAAG......................................................................282.000.001.001.00----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTTTGGG.......................................................................262.000.001.001.00----------------------
.......................................................................................................................................................TACTTTTTTGTTTTGTTTTGTTTCGAG........................................................................272.000.00-2.00----------------------
.................................................................AAACACATTTCTTTTTTCAAG....................................................................................................................................................................212.000.00--2.00---------------------
...........................................................................................................................................................TTTTTGTTTTGTTTTGTTTTTATTTTTTCC.................................................................302.000.002.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTGTC.......................................................................272.000.001.001.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTGTGG........................................................................262.000.001.001.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTGCTG........................................................................262.000.00-2.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTTGGG......................................................................282.000.002.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCTTT........................................................................262.000.002.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCGGG........................................................................261.000.001.00-----------------------
.......................................................................................................................................................TACTTTTTTGTTTTGTTTTGTTTCTCT........................................................................271.000.00-1.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTCTGG.........................................................................251.000.00-1.00----------------------
................................................................................................................TAGTTTTTCATTCTGTCGTTC.....................................................................................................................211.000.00--------------1.00---------
........................TAAAGTGCTGGGATTACAGATT............................................................................................................................................................................................................221.000.00----------1.00-------------
..........................................................................................................................................................TTTTTTGTTTTGTTTTGTTGCTG.........................................................................231.000.00-1.00----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTGCGG........................................................................261.000.001.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCTTC........................................................................261.000.001.00-----------------------
.......................................ACAGATGTGAACCACCGTGCAACA...........................................................................................................................................................................................241.000.00---------------------1.00--
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTCTCC........................................................................251.000.001.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTGT........................................................................261.000.00-1.00----------------------
............................................................................................................................................................TTTTGTTTTGTTTTGTTTTTATGGTA....................................................................261.000.00-1.00----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTCTTC........................................................................251.000.001.00-----------------------
............................GTGCTGGGATTACAGATGTGAACTCTG...................................................................................................................................................................................................271.000.00------------1.00-----------
...............................CTGGGATTACAGATGTGAACTCTG...................................................................................................................................................................................................241.000.00-----1.00------------------
.................................................................................TGAGCAAGATCTCTGTATGGTT...................................................................................................................................................221.000.00---------1.00--------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTCC........................................................................261.000.001.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCTC.........................................................................251.000.00-1.00----------------------
.............................................................................................................................................................TTTGTTTTGTTTTGTTTTTATTTCTTC..................................................................271.000.001.00-----------------------
..........................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTTATTCTG....................................................................281.000.00-1.00----------------------
..........................................................................................................................TTCTGTCATACTATTGG...............................................................................................................171.000.00--1.00---------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTCATC........................................................................251.000.00--1.00---------------------
................................................................................................................TAGTTTTTCATTCTGTCTATC.....................................................................................................................211.000.00-1.00----------------------
.......................................................................................................................................................TACTTTTTTGTTTTGTTTTGGGT............................................................................231.000.001.00-----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTCTGG.........................................................................241.000.001.00-----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTCGGC........................................................................251.000.001.00-----------------------
.....................................TTACAGATGTGAACCACCGCGAT..............................................................................................................................................................................................231.000.00-------------1.00----------
..................................................................................................................................................................TTTGTTTTGTTTTTATTTTTGCC.................................................................231.000.00--1.00---------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTGTTT......................................................................281.000.00-1.00----------------------
......................................................................................................................................................TTACTTTTTTGTTTTGTTTTGTTTTCGAG.......................................................................291.000.001.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTGCTC.......................................................................271.000.001.00-----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTCAG..........................................................................231.000.001.00-----------------------
..........................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTTATGC......................................................................261.000.001.00-----------------------
.........................................................................................................................................................CTTTTTTGTTTTGTTTTGTTTCGTC........................................................................251.000.001.00-----------------------
...................................................................................................................................................................................................CTTAGGGAGTACAGAAAC.....................................181.000.00-----------------1.00------
........................TAAAGTGCTGGGATTACTTT..............................................................................................................................................................................................................201.000.00----------------1.00-------
....................................................................................................................................................CTTTACTTTTTTGTTTTGTTGTC...............................................................................231.000.00--1.00---------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTTGTT.......................................................................271.000.001.00-----------------------
......................................................................................................................................................................................................AGGGAGTACAGACGCC....................................1611.001.00-------1.00----------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTCCTT........................................................................261.000.001.00-----------------------
........................................................................................................................................................ACTTTTTTGTTTTGTTTTGTTTTGGGC.......................................................................271.000.001.00-----------------------
.................................................................................................................AGTTTTTCATTCTGTCGATC.....................................................................................................................201.000.00-----------------------1.00
......................................................................................................................................................TTACTTTTTTGTTTTGTTTTGTTTTT..........................................................................2670.290.290.29-----------------------
......................................................................................................................................................TTACTTTTTTGTTTTGTTTTGTTTTTGTC.......................................................................2970.140.290.14-----------------------

Antisense strand
AGTGATCCACCTGCCTTGGCCTCCTAAAGTGCTGGGATTACAGATGTGAACCACCGTGCCTGGCCAAACACATTTCTTTTTTGAGCAAGATCTCTGTATTAAGTAAAATTGTTAGTTTTTCATTCTGTCATACTATTTACTTGTGCTTCTTTACTTTTTTGTTTTGTTTTGTTTTTATTTTTGTATTTGCTATTACTTAGGGAGTACAGACGCCATACCTTCATTTATCTGCAATGCAGGAAGGAGATTA
.............................................................(((.(((((............((((((((.....(((..(((((.......((((....((...))....))))........)))))...)))..))))))))))))).))).............................................................................
............................................................61......................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...GATCCACCTGCCTTGGCCTCCTGG............................................................................................................................................................................................................................... 242.000.001.001.00----------------------
..............................................................................................TGTATTAAGTAAAATATCG......................................................................................................................................... 192.000.00---2.00--------------------
.......CACCTGCCTTGGCCTCCTAAAC............................................................................................................................................................................................................................. 222.000.00-2.00----------------------
.........CACTTTAGGAGGCCAAGGCAGG........................................................................................................................................................................................................................... 2201.001.00----------------------1.00-
.....TCCACCTGCCTTGGCCTCCTAGGAC............................................................................................................................................................................................................................ 251.000.00-1.00----------------------
..........................AAGTGCTGGGATTACAGAA............................................................................................................................................................................................................. 191.000.00---------------1.00--------
..TAGGAGGCCAAGGCAGGTGGATCA................................................................................................................................................................................................................................ 2401.001.00--------------------1.00---
......CCACCTGCCTTGGCCTCCTAAGCG............................................................................................................................................................................................................................ 241.000.00-1.00----------------------
.....TCCACCTGCCTTGGCCTCCTAAACG............................................................................................................................................................................................................................ 251.000.00-1.00----------------------
.................................................................................................................................ATACTATTTACTTGTGCTATAT................................................................................................... 221.000.00------------------1.00-----
................TGGCCTCCTAAAGTGCTGGGATGACT................................................................................................................................................................................................................ 261.000.00-1.00----------------------
.....................................................................................................................................................................................................TAGGGAGTACAGACGCC.................................... 171.000.00--------1.00---------------
......................................................................................................AAACTAACAATTTTAC.................................................................................................................................... 1660.170.17--0.17---------------------