ID: uc011dgn.1_intron_1_0_chr5_179042597_r.3p
GENE: (4)
chr5:179042547-179042796-


(1)
AGO2.ip 		(3)
B-CELL 		(4)
BREAST 		(19)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
XRN.ip

Sense strand
TTGTTCACTTTTTTGTCTTTTGGTTAGCATTAAGTCAGTTTTAGACAGAGGGAGAATTTGAAATAGTAGAATGGTGGTTGGGTTCAGGATCGTATTTATTAGTCAGTTAACCTAGGATTGGTTTTATTTATTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG
...........................................................(((((((((((((.....(((((((...(((...........)))....))))))).....)))))))).)))))....................................................................................................................
..........................................................59.................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577741(Rovira)
total RNA. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTCC...............................................................................................................26122.002.0010.0012.00--------------------------------------------------------
....................................................................................................................................TTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................68118.0018.00--9.006.00---2.00-1.00------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTCTTC...............................................................................................................2610.000.006.004.00--------------------------------------------------------
......................................................................................................................................TTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTG.....................................................6319.009.00--9.00-------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTTC...............................................................................................................2619.009.006.003.00--------------------------------------------------------
................................................................................................................................TATTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCA...................................................7118.008.00--8.00-------------------------------------------------------
....................................................................................................................................TTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGC....................................................6617.007.00--7.00-------------------------------------------------------
.......................................................................................................................................TTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................6517.007.00---7.00------------------------------------------------------
.................................................................................................................................................................................................................................TGATTTTCAATCAAACA........1736.006.00----6.00-----------------------------------------------------
...................................................................................................................................TTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGC....................................................6715.005.00--5.00-------------------------------------------------------
.....................................................................................................................................TTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................6715.005.00---5.00------------------------------------------------------
................................................................................................................TAGGATTGGTTTTATTTATTTTTTTCC...............................................................................................................274.000.004.00---------------------------------------------------------
................................................................................................................TAGGATTGGTTTTATTTATTTTTTTC................................................................................................................264.000.00-4.00--------------------------------------------------------
...............................................................TAGTAGAATGGTGGTTGGGTTCA....................................................................................................................................................................2314.004.00------------------2.00------1.00---------------1.00----------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTC................................................................................................................2514.002.004.00---------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTCTC...............................................................................................................264.000.002.002.00--------------------------------------------------------
.....................................................................................................................TTGGTTTTATTTATTTTTTTTCAATC...........................................................................................................263.000.003.00---------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTCA...............................................................................................................2613.002.001.002.00--------------------------------------------------------
.................................................................GTAGAATGGTGGTTGGGTTCA....................................................................................................................................................................2113.003.00--------------2.00--------------------------------------1.00----
..........................................................................................................................................................................ATAGTCTTACCCTACAAAAT............................................................2013.003.00------3.00---------------------------------------------------
................................................................................................................................TATTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................7213.003.00---3.00------------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTC................................................................................................................223.000.001.002.00--------------------------------------------------------
................................................................................................................TAGGATTGGTTTTATTTATTTCTT..................................................................................................................242.000.00-2.00--------------------------------------------------------
.......................................................ATTTGAAATAGTAGAATGGTGGTTGGGTTCAGG..................................................................................................................................................................3312.002.00----------------------------1.00-----------1.00-----------------
.............................................................AATAGTAGAATGGTGGTTGGGTTCAGG..................................................................................................................................................................2712.002.00-----2.00----------------------------------------------------
............................................ACAGAGGGAGAATTTGAAATAGTAGAATGG................................................................................................................................................................................3012.002.00------------------------------1.00-------1.00-------------------
........................................................................................................................................................................................................ACCAAGTTTTACAGGAAAACTCCA..........................2412.002.00----------2.00-----------------------------------------------
............................................................................GTTGGGTTCAGGATCGTAAAA.........................................................................................................................................................212.000.00----------------2.00-----------------------------------------
.........................................TAGACAGAGGGAGAATTA...............................................................................................................................................................................................182.000.00-----2.00----------------------------------------------------
.......................................................................TGGTGGTTGGGTTCAGGA.................................................................................................................................................................1812.002.00-2.00--------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTT.................................................................................................................2412.002.002.00---------------------------------------------------------
.....................................................................................................................................................................................CTACAAAATCCTTTTGCAG..................................................1912.002.00-----------------------1.00---------------------------1.00------
.........................................................................................................................................TCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................6312.002.00---1.00-----1.00------------------------------------------------
........................................................................................................................................................................................................................................CAATCAAACATTGCATAG1812.002.00-----------------2.00----------------------------------------
..........................................................................................................................TTTATTTATTTTTTTTCAATTGGTCTAAAG..................................................................................................3012.002.00----2.00-----------------------------------------------------
.................................................................................................................................................................................................................TACAGGAAAACTCCAGTG.......................1812.002.00-------------------1.00-------------------1.00------------------
............................................................................................................................TATTTATTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG..................................................7612.002.00---2.00------------------------------------------------------
...........................................................................................................................................AATTGGTCTAAAGAATGGTGATTT.......................................................................................2411.001.00----1.00-----------------------------------------------------
...............................................................TAGTAGAATGGTGGTTGGGTTCAG...................................................................................................................................................................2411.001.00-----1.00----------------------------------------------------
......................................TTTTAGACAGAGGGAGAATTCGA.............................................................................................................................................................................................231.000.00-1.00--------------------------------------------------------
.......................................................................................................................................................GAATGGTGATTTTGGTATC................................................................................191.000.00--------1.00-------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTCCTC...............................................................................................................261.000.001.00---------------------------------------------------------
...................................................................................................................................................................................................TGCAGACCAAGTTTTACAGGA..................................2111.001.00-----1.00----------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTTCAATCGG.........................................................................................................291.000.00----1.00-----------------------------------------------------
...................................................................AGAATGGTGGTTGGGTTCA....................................................................................................................................................................1911.001.00------------1.00---------------------------------------------
..........................................................................................................TTAACCTAGGATTGGGT...............................................................................................................................171.000.00----1.00-----------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTCC...................................................................................................................221.000.001.00---------------------------------------------------------
......................................................................................................................................TTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCA...................................................6511.001.00-------1.00--------------------------------------------------
............................................................AAATAGTAGAATGGTGGTTGGGTTCAGGA.................................................................................................................................................................2911.001.00----1.00-----------------------------------------------------
......................................................................................................................................................................................................................................TTCAATCAAACATTGATT..181.000.00----------------------------------------------------1.00-----
...........................................................................................................................................................GGTGATTTTGGTATTATAGTC..........................................................................2111.001.00--------------------------1.00-------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTC.................................................................................................................211.000.00-1.00--------------------------------------------------------
....................................................................................................................................TTTTTTCAATTGGTCTAAAGAATGGTG...........................................................................................2711.001.00------------------------------------------------1.00---------
.................................................................................................................AGGATTGGTTTTATTTATTTCTC..................................................................................................................231.000.00-1.00--------------------------------------------------------
.............................................................................................................................................................................................................................CCAGTGATTTTCAATCAAACATTG.....2411.001.00-------------------------------------1.00--------------------
..................................TCAGTTTTAGACAGAGGGAGAACTTG..............................................................................................................................................................................................261.000.001.00---------------------------------------------------------
......................................TTTTAGACAGAGGGAGAACT................................................................................................................................................................................................201.000.00-1.00--------------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTTCAATTGG.........................................................................................................2911.001.00----1.00-----------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTTCAATTGGTC.......................................................................................................3111.001.001.00---------------------------------------------------------
..........................................................................................................................................................................ATAGTCTTACCCTACA................................................................1611.001.00-----------1.00----------------------------------------------
....................................................................................................................................TTTTTTCAATTGGTCTAAAGAATGGT............................................................................................2611.001.00---------------------------------1.00------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTC.................................................................................................................241.000.001.00---------------------------------------------------------
................................................................AGTAGAATGGTGGTTGGGTTCA....................................................................................................................................................................2211.001.00------------------------------------------1.00---------------
...............................................................TAGTAGAATGGTGGTTGGA........................................................................................................................................................................191.000.00---------------------1.00------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTTCA..............................................................................................................2711.001.001.00---------------------------------------------------------
......................................TTTTAGACAGAGGGAGAATTT...............................................................................................................................................................................................2111.001.00-----------------------------1.00----------------------------
.......................................................................................................................GGTTTTATTTATTTTTTTTCAATTGGTC.......................................................................................................2811.001.001.00---------------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTTCAATT...........................................................................................................2711.001.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................TACAGGAAAACTCCAGTGATTTTC.................2411.001.00-1.00--------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTCTCT................................................................................................................251.000.001.00---------------------------------------------------------
...............................................................................GGGTTCAGGATCGTATTTATTAGTCAGTTAACC..........................................................................................................................................3311.001.00---------------------------------------------1.00------------
...............................................................TAGTAGAATGGTGGTTGGGTTCAGGACCG..............................................................................................................................................................291.000.001.00---------------------------------------------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTTCAATTGGCC.......................................................................................................3111.001.001.00---------------------------------------------------------
......................................................................ATGGTGGTTGGGTTCAGGCT................................................................................................................................................................201.000.00----------------------1.00-----------------------------------
.....................................................................................................................TTGGTTTTATTTATTTTTTTTC...............................................................................................................2211.001.00----------------------------------------------1.00-----------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTCTTC..............................................................................................................271.000.00-1.00--------------------------------------------------------
.............................................................AATAGTAGAATGGTGGTTGGGTTCAGGA.................................................................................................................................................................2811.001.00------1.00---------------------------------------------------
......................................................................................................................TGGTTTTATTTATTTTTTTTCAATTGGCC.......................................................................................................291.000.001.00---------------------------------------------------------
..................................................................TAGAATGGTGGTTGGGTTCAGGA.................................................................................................................................................................2311.001.00----1.00-----------------------------------------------------
........................................................TTTGAAATAGTAGAATGGTGGTTGGGTTCAGG..................................................................................................................................................................3211.001.00--------------------------------------------------1.00-------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTCT................................................................................................................251.000.00-1.00--------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTCC..................................................................................................................231.000.001.00---------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTCTCA...............................................................................................................261.000.00-1.00--------------------------------------------------------
..............................................................................................................................................TGGTCTAAAGAATGGTGATTTTGGA...................................................................................251.000.00-------------------1.00--------------------------------------
.................................................................................................................................................................................................................TACAGGAAAACTCCAGTGATTTT..................2311.001.00------------------------------------1.00---------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTTTTTC..............................................................................................................271.000.00-1.00--------------------------------------------------------
.......................................................................................................................................................................................................................................TCAATCAAACATTGCATAG1911.001.00--------------------1.00-------------------------------------
......................................................................ATGGTGGTTGGGTTCAGGATCGC.............................................................................................................................................................231.000.00-1.00--------------------------------------------------------
..........................................................TGAAATAGTAGAATGGTGGTTGGGTTCAGGA.................................................................................................................................................................3111.001.00-----------------------------------------------1.00----------
...........................................................................................GTATTTATTAGTCAGTTAACCTAGG......................................................................................................................................2511.001.00-----1.00----------------------------------------------------
...................................................................................................................................................................................................................................ATTTTCAATCAAACATTGCATAG2311.001.00-------------1.00--------------------------------------------
................................................................................GGTTCAGGATCGTATTT.........................................................................................................................................................1711.001.00-------------------------------------------1.00--------------
.....................................................................AATGGTGGTTGGGTTCAGGATCGTACCTA........................................................................................................................................................291.000.00-1.00--------------------------------------------------------
.............................................................................................................ACCTAGGATTGGTTTTATTTATTTTTTTCC...............................................................................................................3011.001.00-1.00--------------------------------------------------------
.................................................................................GTTCAGGATCGTATTTAT.......................................................................................................................................................1811.001.00--------------------------------1.00-------------------------
.................................................................GTAGAATGGTGGTTG..........................................................................................................................................................................1501.001.00---------------------------1.00------------------------------
..........................................AGACAGAGGGAGAATTTGAAATAG........................................................................................................................................................................................2411.001.00--------1.00-------------------------------------------------
...................................................................................................................................................................................................................................ATTTTCAATCAAACATTTCAC..211.000.00----1.00-----------------------------------------------------
.....................................................................................................................................................................................................................GGAAAACTCCAGTGATTTTCA................2111.001.00-------------------------------------------------1.00--------
......................................................................ATGGTGGTTGGGTTCAGGATCGTACTT.........................................................................................................................................................271.000.00-1.00--------------------------------------------------------
............................................................................................................................................................................................................AGTTTTACAGGAAAACTCCAGCGA......................241.000.00-1.00--------------------------------------------------------
................................................................................................................................TATTTTTTTTCAATTGCC........................................................................................................181.000.00----1.00-----------------------------------------------------
.....................................................................AATGGTGGTTGGGTTCAGGA.................................................................................................................................................................2011.001.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................TACAGGAAAACTCCAGTTT......................191.000.00--------------------------------------------1.00-------------
...............................................................TAGTAGAATGGTGGTTGGG........................................................................................................................................................................1911.001.00------------------------1.00---------------------------------
.................................................................GTAGAATGGTGGTTGGGTTCAGGA.................................................................................................................................................................2411.001.00------------1.00---------------------------------------------
.........................................................................................................................TTTTATTTATTTTTTTTCGC.............................................................................................................201.000.001.00---------------------------------------------------------
...............................................................................................................................................................................CTTACCCTACAAAATCCTTTTG.....................................................2211.001.00----------------------------------1.00-----------------------
.....................................................................................................................................................AAGAATGGTGATTTTGGTATTATAGCCTC........................................................................291.000.00-1.00--------------------------------------------------------
...........................................................................................................................................AATTGGTCTAAAGAATGGTGATTTTGG....................................................................................2711.001.00---------------1.00------------------------------------------
.................................GTCAGTTTTAGACAGAGGGA.....................................................................................................................................................................................................2011.001.00-----------1.00----------------------------------------------
..................................................................................TTCAGGATCGTATTTATTAGTCAG................................................................................................................................................2411.001.00---------------1.00------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTCT.................................................................................................................241.000.001.00---------------------------------------------------------
.................................................................................................................AGGATTGGTTTTATTTATTTTTC..................................................................................................................231.000.00-1.00--------------------------------------------------------
...................................CAGTTTTAGACAGAGGGAGAATTTGA.............................................................................................................................................................................................2611.001.00-----------------------------------1.00----------------------
....................................................................................................................ATTGGTTTTATTTATTTTTTTCC...............................................................................................................231.000.001.00---------------------------------------------------------
......................................................AATTTGAAATAGTAGAATGGTGGTTGGGTTC.....................................................................................................................................................................3111.001.001.00---------------------------------------------------------
.............................................................................................................ACCTAGGATTGGTTTTATTTATTTTTTT.................................................................................................................2811.001.001.00---------------------------------------------------------
................................................................................................................TAGGATTGGTTTTATTTATTTTTTTTC...............................................................................................................2711.001.00-1.00--------------------------------------------------------
.................................................................GTAGAATGGTGGTTGGGT.......................................................................................................................................................................1811.001.00-------------------------------1.00--------------------------
......................................................................................................................................................................................................................GAAAACTCCAGTGATTTT..................1830.670.67--------0.67-------------------------------------------------
..........................................................................TGGTTGGGTTCAGGA.................................................................................................................................................................1550.400.40----0.40-----------------------------------------------------
.............................................................................................................................................................TGATTTTGGTATTATAGT...........................................................................1840.250.25-------------------------------------------------------0.25--
..............................................................................................................................TTTATTTTTTTTCAATTG..........................................................................................................1850.200.20----0.20-----------------------------------------------------
.........................................................................................................................................................................................................CCAAGTTTTACAGGAA.................................1670.140.14--------------------------------------------------------0.14-
.........................................................................................................................TTTTATTTATTTTTTTTCAA.............................................................................................................2080.120.120.12---------------------------------------------------------
.........................................................................................................................TTTTATTTATTTTTTTTCAACGG..........................................................................................................2380.120.12---------------------------------------------------------0.12

Antisense strand
TTGTTCACTTTTTTGTCTTTTGGTTAGCATTAAGTCAGTTTTAGACAGAGGGAGAATTTGAAATAGTAGAATGGTGGTTGGGTTCAGGATCGTATTTATTAGTCAGTTAACCTAGGATTGGTTTTATTTATTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG
...........................................................(((((((((((((.....(((((((...(((...........)))....))))))).....)))))))).)))))....................................................................................................................
..........................................................59.................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577741(Rovira)
total RNA. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................CCTAGGATTGGTTTTCCGG......................................................................................................................... 191.000.00-------------1.00--------------------------------------------
..................................................................................................................................................................................AAAGGATTTTGTAGGGT....................................................... 1730.330.33-----0.33----------------------------------------------------
...................................................................................................................................................................................AAAGGATTTTGTAGGG....................................................... 1640.250.25------------------------------------------------------0.25---