ID: uc011dex.1_intron_3_0_chr5_170818429_f
GENE: (4)
chr5:170818379-170818759+


(1)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(7)
HELA 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTAAGGGCACTTACATACTTTGGATGTTGTGTCAAGGTTTAATTCTGTTTTAAGGTAGGTTTGGTGTCATTTAGTTGTGCCAAGGAGATAGAAAGTGGTTCTTTATCTTCTGTCACTGGAGTTCGATGGTCAACTCTTGAACATGGGGGCTTCTGCTGCTACTTTTATCAGAGGTGGAAAAACAGGTTCACTGGTTTGTTGATTTGGCTTATGTGTTTGCCTGTAATGTTTATTGTTCATTTTCTTCACATGTTTAGTGATGAAAAATTTCTCCCTTCTAGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAA
..................................................................................................................((.(((......))).))....(((((((..(((....)))..))))))).((((.((((((.((....)).)))))).(((.(((....))).)))......))))................................................................................................................................................................
.................................................................................................................114.........................................................................................................222.............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR343334SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................................................................CTTCTGCTGCTACTTCATT...................................................................................................................................................................1917.000.0012.00-----5.00---------------------------------------------------------------------------
.............AACACTGGCAACTTTGAAAATATC........................................................................................................................................................................................................................................................................................................................................................248.000.00-8.00--------------------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGATGTTG..............................................................................................................................................................................................................................................................................................................2918.008.00--5.00--1.00---------------1.00--1.00---------------------------------------------------------
.......................................................................................................................................................................................................................................................................TGTTTGCCTGTAATGTTTATTGTTCATTTTCTTCACATGTTTAGTGATGAAAAATTTCTCCCTTCTAG..................................................6817.007.00----7.00-----------------------------------------------------------------------------
.......................................................................................................................................................................................................CTTCTGCTGCTACTTCAT....................................................................................................................................................................186.000.004.00-----1.00------------------------1.00--------------------------------------------------
.........AAGTAACACTGGCAACTTA.................................................................................................................................................................................................................................................................................................................................................................194.000.00-----2.00-----2.00----------------------------------------------------------------------
....................................................................................................................................................................................................GGGCTTCTGCTGCTACTTTTATCAGA...............................................................................................................................................................2614.004.00---4.00------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................TTCCCTTGGGGGCTTTGAAATATC........................243.000.00-3.00--------------------------------------------------------------------------------
........AAAGTAACACTGGCAACTTA.................................................................................................................................................................................................................................................................................................................................................................203.000.00-----2.00------1.00---------------------------------------------------------------------
......................................................................................................................ATTTAGTTGTGCCAAGGAG....................................................................................................................................................................................................................................................1913.003.00----------3.00-----------------------------------------------------------------------
.............AACACTGGCAACTTTGAA..............................................................................................................................................................................................................................................................................................................................................................1803.003.00--------3.00-------------------------------------------------------------------------
.........................................................CACTTACATACTTTGGATGTTGT.............................................................................................................................................................................................................................................................................................................2313.003.00---3.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................ATAACACCACCAGTGGTCTTAAGGTCGA.283.000.00-------3.00--------------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGATGTTGTG............................................................................................................................................................................................................................................................................................................3112.002.00-----------------------1.00--------------1.00-------------------------------------------
....................................................................................................................................................................................................................................................................ATGTGTTTGCCTGTAATGTTTATTGTTCATTTTCTTCACATGTTTAGTGATGAAAAATTTCTCCCTTCTAG..................................................7112.002.00---------2.00------------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGATGTT...............................................................................................................................................................................................................................................................................................................2812.002.00-------------2.00--------------------------------------------------------------------
.............AACACTGGCAACTTTGAAAATGA.........................................................................................................................................................................................................................................................................................................................................................232.000.00--2.00-------------------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGATG.................................................................................................................................................................................................................................................................................................................2612.002.00-------------------------1.00---------------1.00----------------------------------------
..................TGGCAACTTTGAAAATGTCTGTAACAC................................................................................................................................................................................................................................................................................................................................................272.000.00------------------2.00---------------------------------------------------------------
...............................................................................................................................................................................................................................................................................TGTAATGTTTATTGTTCATTTTCTTCACATGTTTAGTGATGAAAAATTTCTCCCTTCTAGG.................................................6112.002.00----1.00----1.00------------------------------------------------------------------------
...................................TCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................1781.751.75--------------------1.75-------------------------------------------------------------
..CCAATTAAAGTAACACTGGAAAC....................................................................................................................................................................................................................................................................................................................................................................231.000.00-------------------------1.00--------------------------------------------------------
..............ACACTGGCAACTTTGAAAATGGCC.......................................................................................................................................................................................................................................................................................................................................................241.000.00-------1.00--------------------------------------------------------------------------
.........AAGTAACACTGGCAACTTG.................................................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................TTGAAATAACACCAC...................1501.001.00------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................TTTCTCCCTTCTAGGTTTCCC...........................................2111.001.00--------------------------------1.00-------------------------------------------------
...........................................................................................................................GTTGTGCCAAGGAGATA.................................................................................................................................................................................................................................................1711.001.00------------------------------------1.00---------------------------------------------
.....ATTAAAGTAACACTGGCAACTCTG................................................................................................................................................................................................................................................................................................................................................................241.000.00----------------------------------1.00-----------------------------------------------
..........AGTAACACTGGCAACTTTAT...............................................................................................................................................................................................................................................................................................................................................................201.000.00---------------1.00------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGAA..................................................................................................................................................................................................................................................................................................................2511.001.00---------------1.00------------------------------------------------------------------
.......................................................................................................................................................................................................CTTCTGCTGCTACTTCATC...................................................................................................................................................................191.000.001.00---------------------------------------------------------------------------------
.......................................................................................................................................................................................................CTTCTGCTGCTACTTCA.....................................................................................................................................................................171.000.00------1.00---------------------------------------------------------------------------
.TCCAATTAAAGTAACACTGGCAACTTCG................................................................................................................................................................................................................................................................................................................................................................281.000.00--------------------------------------------------1.00-------------------------------
.........................................................................................................................................................................................................TCTGCTGCTACTTTTCTAG.................................................................................................................................................................191.000.001.00---------------------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTG.....................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00------------------------------------
.....................................................................................................................................................................................AACTCTTGAACATGGGGGCTTC..................................................................................................................................................................................2211.001.00--------------1.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GAAATAACACCACCAGTGGTCTTAAGGTTGAA3221.001.00---1.00------------------------------------------------------------------------------
...............................................................................................................................................................CTGTCACTGGAGTTCGATGG..........................................................................................................................................................................................................2011.001.00----------------------1.00-----------------------------------------------------------
..............ACACTGGCAACTTTGAAAATGT.........................................................................................................................................................................................................................................................................................................................................................2201.001.00--------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................TCTTGAACATGGGGGCTTCT.................................................................................................................................................................................2011.001.00----------------------1.00-----------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGA...................................................................................................................................................................................................................................................................................................................2411.001.00---------------1.00------------------------------------------------------------------
..................................................GTAAGGGCACTTACATACTTTGGATGTTT..............................................................................................................................................................................................................................................................................................................2911.002.00-----1.00----------------------------------------------------------------------------
....................................................................................................................................AGGAGATAGAAAGTGCTCT......................................................................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------------------------------
.........AAGTAACACTGGCAACTTTA................................................................................................................................................................................................................................................................................................................................................................201.000.00------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................CATTTTCTTCACATGTCTGG..........................................................................201.000.00-------------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................................ATCAGAGGTGGAAAAATA...................................................................................................................................................181.000.00-----------------------------------1.00----------------------------------------------
................................................................................................................................GCCAAGGAGATAGAAAGTG..........................................................................................................................................................................................................................................1911.001.00------------------------------1.00---------------------------------------------------
........AAAGTAACACTGGCAACTTTGAAAACGTC........................................................................................................................................................................................................................................................................................................................................................291.000.00----------------1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................TTTAGTGATGAAAAAAGT.............................................................181.000.00-------------------------------------------------1.00--------------------------------
...................................................................................................................................AAGGAGATAGAAAGTGGTTC......................................................................................................................................................................................................................................2011.001.00--------------1.00-------------------------------------------------------------------
.................CTGGCAACTTTGAAAATTCTG.......................................................................................................................................................................................................................................................................................................................................................211.000.00--------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGTTTCCCTTGGGGGCTTTTCAA............................231.000.00---------------------------------------1.00------------------------------------------
..........AGTAACACTGGCAACTTA.................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------1.00----------------------------------------------------------------------
...........................TGAAAATGTCTGTACAGCCAACGGGT........................................................................................................................................................................................................................................................................................................................................261.000.00----------------------------1.00-----------------------------------------------------
............................GAAAATGTCTGTACAGCCAT.............................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------------1.00------------------------------------------------
......TTAAAGTAACACTGGCAACTTCG................................................................................................................................................................................................................................................................................................................................................................231.000.00-------------------------------------------1.00--------------------------------------
...........................................................................................................................GTTGTGCCAAGGAGATAGAAAGTG..........................................................................................................................................................................................................................................2411.001.00----------------------------------------------1.00-----------------------------------
.................................TGTCTGTACAGCCAACGGTCCCC.....................................................................................................................................................................................................................................................................................................................................231.000.00----------------1.00-----------------------------------------------------------------
..........AGTAACACTGGCAACTTTT................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------1.00------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................GTGGTCTTAAGGTTGGGC181.000.00--1.00-------------------------------------------------------------------------------
..............ACACTGGCAACTTTGAAAATGTCC.......................................................................................................................................................................................................................................................................................................................................................241.000.00-------1.00--------------------------------------------------------------------------
......TTAAAGTAACACTGGCAACCTTG................................................................................................................................................................................................................................................................................................................................................................231.000.00-------------------1.00--------------------------------------------------------------
.......TAAAGTAACACTGGCAACTTTAA...............................................................................................................................................................................................................................................................................................................................................................231.000.00------------1.00---------------------------------------------------------------------
.................CTGGCAACTTTGAAAATGT.........................................................................................................................................................................................................................................................................................................................................................1901.001.00----------------------------------------1.00-----------------------------------------
......................................................................................................................................................................................................................TTATCAGAGGTGGAAAAACAGA.................................................................................................................................................221.000.00-----------------1.00----------------------------------------------------------------
...........................................................................................................................................................................................TGAACATGGGGGCTTCTGCT..............................................................................................................................................................................2011.001.00-------------------------------------1.00--------------------------------------------
....................................................................................................................................................................................CAACTCTTGAACATGGGGGCTT...................................................................................................................................................................................2211.001.00--------------------------1.00-------------------------------------------------------
................................ATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................1980.750.75-----------------0.12---------------------------------0.12--0.25----0.25----------------------
...............................AATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2080.620.62-----0.25------------------------0.12--------------------0.12----------------------0.12-------
................................ATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2080.620.62--0.12--------------0.12----------------------------------------------0.25------------0.12----
...............................AATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2180.620.62--0.25--------------0.25---------------------------------------0.12------------------------
...........................TGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2570.570.57-----------------0.14---0.14-------------------------------0.14--------------0.14-------------
...............................................................................................................................................................................................................................................................................................................................................................AATAACACCACCAGTGGTCTTAAGG.....2520.500.50----------------------------------------------------0.50-----------------------------
................................ATGTCTGTACAGCCAACGGTTCCC.....................................................................................................................................................................................................................................................................................................................................2480.500.62----------------0.50-----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................CCAGTGGTCTTAAGGTTGAA2020.500.50--------------------------------------------------------0.50-------------------------
........................................................................................................................................................................................................................................................................................................................................................................ACCAGTGGTCTTAAGGT....1720.500.50--------------------0.50-------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................CAGTGGTCTTAAGGTTGAA1920.500.50-----------------0.50----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AGTGGTCTTAAGGTTGAA1820.500.50-------------------------------------------------------0.50--------------------------
.................................................................................................................................................................................................................................................................................................................................................................TAACACCACCAGTGGTCTTAAGGTTGAA2820.500.50---------------------------0.50------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ACACCACCAGTGGTCTTAAGG.....2120.500.50--0.50-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................AACACCACCAGTGGTCTTAAGGTT...2420.500.50--------0.50-------------------------------------------------------------------------
..........................TTGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2670.430.43-----------------------------------------------------0.29-------------------0.14--------
..........................TTGAAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2570.430.43--------------------------------------------------------------0.14--------0.140.14---------
..............................AAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2280.380.38--0.38-------------------------------------------------------------------------------
..............................AAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2180.380.38---------------------------------------------------0.25----------------------------0.12-
.............................AAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2280.380.38----------------------------------------------------0.25-----0.12-----------------------
..............................................................................................................................................................................................................................................................................................................................................................AAATAACACCACCAGTGGTCTTAAG......2530.330.33-------------------0.33--------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................AACACCACCAGTGGTCTT.........1860.330.33--------0.17---------------------------------------------------------0.17---------------
.............................................................................................................................................................................................................................................................................................................................................................................TGGTCTTAAGGTTGAA1630.330.33---------------------------------------------------------0.33------------------------
......................................................................................GTTTAATTCTGTTTTAAG.....................................................................................................................................................................................................................................................................................1830.330.33-------------------------------------------------------------0.33--------------------
.........................TTTGAAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2670.290.29-------0.14--------------------------------------------------------------0.14-----------
........................CTTTGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2870.290.29--0.29-------------------------------------------------------------------------------
.........................TTTGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2770.290.29-----------------------------------------------------0.29----------------------------
...............................AATGTCTGTACAGCCAACG...........................................................................................................................................................................................................................................................................................................................................1980.250.25---------------------------------------------------0.12-------0.12----------------------
..............................AAATGTCTGTACAGCCAACG...........................................................................................................................................................................................................................................................................................................................................2080.250.25---------------------------------------------------0.12----------0.12-------------------
..................................GTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................1880.250.25-----------------0.25----------------------------------------------------------------
............................GAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2480.250.25----------------------------------------------------------0.25-----------------------
....AATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................4750.200.20-----------------------------------------------------------------0.20----------------
....................GCAACTTTGAAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................3170.140.14-------------------------------------------------------------------0.14--------------
.....................CAACTTTGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................3170.140.14---------------------------------------------------------------0.14------------------
..........................TTGAAAATGTCTGTACAGCCAACGGGT........................................................................................................................................................................................................................................................................................................................................2770.140.43----------------------------0.14-----------------------------------------------------
..........................TTGAAAATGTCTGTACAGCCAACG...........................................................................................................................................................................................................................................................................................................................................2470.140.14-----------------------------0.14----------------------------------------------------
..................TGGCAACTTTGAAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................3470.140.14---------------------------------------------------------------------0.14------------
........................CTTTGAAAATGTCTGTACAGCCAACG...........................................................................................................................................................................................................................................................................................................................................2670.140.14------------------------------------------------------0.14---------------------------
...................................TCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................1680.120.12-------------------------------------------------------------------------------0.12--
.................................TGTCTGTACAGCCAACG...........................................................................................................................................................................................................................................................................................................................................1780.120.12----------------------------------------------------------------------------0.12-----
.............................AAAATGTCTGTACAGCCAACGGT.........................................................................................................................................................................................................................................................................................................................................2380.120.12---------------------------------------------------------------------------0.12------
................................................................................................................................GCCAAGGAGATAGAAA.............................................................................................................................................................................................................................................1680.120.12---------------------------------------------------------------0.12------------------
............................GAAAATGTCTGTACAGCCAACGG..........................................................................................................................................................................................................................................................................................................................................2380.120.12------------------------------------------------------0.12---------------------------
................................ATGTCTGTACAGCCAACGGGT........................................................................................................................................................................................................................................................................................................................................2180.120.75------------------------------------------------------------------------------0.12---

Antisense strand
GTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTAAGGGCACTTACATACTTTGGATGTTGTGTCAAGGTTTAATTCTGTTTTAAGGTAGGTTTGGTGTCATTTAGTTGTGCCAAGGAGATAGAAAGTGGTTCTTTATCTTCTGTCACTGGAGTTCGATGGTCAACTCTTGAACATGGGGGCTTCTGCTGCTACTTTTATCAGAGGTGGAAAAACAGGTTCACTGGTTTGTTGATTTGGCTTATGTGTTTGCCTGTAATGTTTATTGTTCATTTTCTTCACATGTTTAGTGATGAAAAATTTCTCCCTTCTAGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAA
..................................................................................................................((.(((......))).))....(((((((..(((....)))..))))))).((((.((((((.((....)).)))))).(((.(((....))).)))......))))................................................................................................................................................................
.................................................................................................................114.........................................................................................................222.............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR343334SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
................................ATGTCTGTACAGCCACA............................................................................................................................................................................................................................................................................................................................................ 171.000.00-----------------------------1.00----------------------------------------------------
............................................................................................................................TTGTGCCAAGGAGATG................................................................................................................................................................................................................................................. 161.000.00------------------------------------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................................GTTCATTTTCTTCACTCTG.............................................................................. 191.000.00-----------------------------------------------1.00----------------------------------
............................................................................................TTCTGTTTTAAGGTAGGTAGA............................................................................................................................................................................................................................................................................ 211.000.00---------1.00------------------------------------------------------------------------
................................ATGTCTGTACAGCCACAAT.......................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------1.00------------------------------------------------------
.......................................................................................................GGTAGGTTTGGTGTCACC.................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00---------------------------------
............................................................................................................................TTGTGCCAAGGAGATAATA.............................................................................................................................................................................................................................................. 191.000.00--------------------------1.00-------------------------------------------------------
............................................................................................................................TTGTGCCAAGGAGATAGATA............................................................................................................................................................................................................................................. 201.000.00--------------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................CTCTTGAACATGGGGGCGTT.................................................................................................................................................................................. 201.000.00-----------------------1.00----------------------------------------------------------
..........................................................................................................................................................CTCCAGTGACAGAAGAT.................................................................................................................................................................................................................. 1730.330.33------------------0.33---------------------------------------------------------------
..................................................................................................................................................CAGAAGATAAAGAACC........................................................................................................................................................................................................................... 1630.330.33------------------------------------------------------------0.33---------------------
..........................................................................................................................................................TCCAGTGACAGAAGAT................................................................................................................................................................................................................... 1690.110.11---------------------------------------------------------------------------------0.11