ID: uc011dcp.1_intron_3_0_chr5_150488112_r.5p
GENE: (21)
chr5:150489114-150489363-


(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(4)
BREAST
(6)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(35)
SKIN

Sense strand
ACGTTTCATGACGATCCTGTGTACCCGGAGCTATCCGCACCTCCGGAGAGGTGAGGCCTGACCTCCTCCCTTCCCAGCTCAGCAGGAAGATCCCAGAATCTGATGAGAGCCTCTCAGCTCTCTGTGGCAAGAGGAGCCCGTTGCCCACCCACCTCCTCCTTAACCCAGCAGTAGCGTGTCATGGGTGACGGCGACTCTGGAGCCCTGGGTTCTAGTCCTGGCTCTACCACTTATACCTCACCTTCTTTCT
.....................................................................(((((..((...)).)))))..(((((........((((((......))))))...(((.((((..((.(((..((((..(((((.((.((......)).)).)).)))...))))..)))))..))))...)))))))).........................................
...................................................................68...........................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..........................................................................................................................................................................................GACGGCGACTCTGGACGCG.............................................19117.001.00-1.00-2.001.002.00-3.00---1.00--1.00-1.001.00-----------1.00--1.00---------1.00-----------1.00-------
..........................................................................................................................................................................................GACGGCGACTCTGGACGC..............................................18113.001.00-1.00--2.00-1.00----1.00-1.001.00-1.00--1.001.00--1.00--------------1.00------------1.00----------
..........................................................................................................................................................................................GACGGCGACTCTGGACG...............................................17110.001.00-1.003.00-----1.001.00---1.00-2.00-----------------1.00----------------------------
..........................................................................................................................................................................................GACGGCGACTCTGGAC................................................1613.001.00------2.00-----1.00-------------------------------------------------
............................................................................................................................................................................................CGGCGACTCTGGAGCGAG............................................182.000.00----------------------------1.00--------------1.00------------------
.........GACGATCCTGTGTACCCGGAGCTATC.......................................................................................................................................................................................................................2612.002.00----------2.00---------------------------------------------------
................CTGTGTACCCGGAGCTA.........................................................................................................................................................................................................................1712.002.002.00-------------------------------------------------------------
........................................................................CCCAGCTCAGCAGGAACAG...............................................................................................................................................................192.000.00-------------------------1.00---------------------1.00--------------
............................................................................................................................................................................................CGGCGACTCTGGAGCG..............................................162.000.00-----------------------------------------------------1.00-1.00------
......................................................................................................................................................................................GGGTGACGGCGACTCTG...................................................1712.002.00----------------------------------1.00--------------1.00------------
......CATGACGATCCTGTGTACCCGGAGCTATCCG.....................................................................................................................................................................................................................3111.001.00----------------------------------------------1.00---------------
............................................................................................................................................................................................CGGCGACTCTGGAGCGG.............................................171.000.00---------------------1.00----------------------------------------
..........................................................................................................................................................................................GACGGCGACTCTGGATGC..............................................1811.001.00-1.00------------------------------------------------------------
.........................CGGAGCTATCCGCACCTCCGGAGAGTC......................................................................................................................................................................................................271.000.001.00-------------------------------------------------------------
..........ACGATCCTGTGTACCCGGAGCTATC.......................................................................................................................................................................................................................2511.001.001.00-------------------------------------------------------------
............................................................................................................................................................................................CGGCGACTCTGGAGCGA.............................................171.000.00------------------------------------------------1.00-------------
.......................................................................TCCCAGCTCAGCAGGAAGATCCCAGAAT.......................................................................................................................................................2811.001.00---------1.00----------------------------------------------------
.....................................................................CTTCCCAGCTCAGCAGGACCAC...............................................................................................................................................................221.000.00------------------1.00-------------------------------------------
.........GACGATCCTGTGTACCCGGAGCT..........................................................................................................................................................................................................................2311.001.00---------------------------------------1.00----------------------
.....................................................................................................................................................................CAGCAGTAGCGTGTCATGG..................................................................1911.001.00-----------------------------------------1.00--------------------
................CTGTGTACCCGGAGCTATC.......................................................................................................................................................................................................................1911.001.00-------------------------------------1.00------------------------
..........................................................................................................................................................................................GACGGCGACTCTGGA.................................................1511.001.00------------------------1.00-------------------------------------
..........ACGATCCTGTGTACCCGGAG............................................................................................................................................................................................................................2011.001.00---------------------------------------------1.00----------------
............................................................................................................................................................................................CGGCGACTCTGGAGCTG.............................................171.000.00-----1.00--------------------------------------------------------
.......ATGACGATCCTGTGTACCCGGAGCTATA.......................................................................................................................................................................................................................281.000.00--------------------------------------------------1.00-----------
..GTTTCATGACGATCCTGTGT....................................................................................................................................................................................................................................2011.001.00------------1.00-------------------------------------------------
............GATCCTGTGTACCCGGAGCTATCCGCACC.................................................................................................................................................................................................................2911.001.00----------------------------------------------------1.00---------
................CTGTGTACCCGGAGC...........................................................................................................................................................................................................................1520.500.50--------0.50-----------------------------------------------------
....TTCATGACGATCCTG.......................................................................................................................................................................................................................................1530.330.33---------------------------------------------------------0.33----
.........................................................CTGACCTCCTCCCTTCC................................................................................................................................................................................1760.170.17-----------------------------------------------------------0.17--

Antisense strand
ACGTTTCATGACGATCCTGTGTACCCGGAGCTATCCGCACCTCCGGAGAGGTGAGGCCTGACCTCCTCCCTTCCCAGCTCAGCAGGAAGATCCCAGAATCTGATGAGAGCCTCTCAGCTCTCTGTGGCAAGAGGAGCCCGTTGCCCACCCACCTCCTCCTTAACCCAGCAGTAGCGTGTCATGGGTGACGGCGACTCTGGAGCCCTGGGTTCTAGTCCTGGCTCTACCACTTATACCTCACCTTCTTTCT
.....................................................................(((((..((...)).)))))..(((((........((((((......))))))...(((.((((..((.(((..((((..(((((.((.((......)).)).)).)))...))))..)))))..))))...)))))))).........................................
...................................................................68...........................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
......................................................................................................................................................................................................................GTCCTGGCTCTACCACTTG................. 191.000.00----------------------------------------1.00---------------------
......................................................................................................................................................................................................................TGGTAGAGCCAGGAC..................... 1501.001.00--------------------------1.00-----------------------------------
................................................................................................................................................GGAGGAGGTGGGTGG........................................................................................... 1501.001.00------------------------------1.00-------------------------------
...........................................................................................................................................................................................................................GGCTCTACCACTTATTTGT............ 191.000.00---1.00----------------------------------------------------------
.............................................................................................................................................................................................GGCTCCAGAGTCGCC.............................................. 1511.001.00---------------------------1.00----------------------------------
.........................CGGAGCTATCCGCACTTGG.............................................................................................................................................................................................................. 191.000.00--------------------------------------------1.00-----------------
.........................CGGAGCTATCCGCACTCGG.............................................................................................................................................................................................................. 191.000.00-----------------------------------1.00--------------------------
........................................................................................................................................................................................................................CCTGGCTCTACCACTTATAGGGG........... 231.000.00--------------------------------------------------------1.00-----
.........................CGGAGCTATCCGCACTTT............................................................................................................................................................................................................... 181.000.00-------------------------------1.00------------------------------
.....................................................................................................................................................................................................................AGTCCTGGCTCTACCGTA................... 181.000.00--------1.00-----------------------------------------------------
.....................................................................................................................................................................................................................AGTCCTGGCTCTACCGTAG.................. 191.000.00------------------------------------1.00-------------------------
...............................................................................................................................................................TTAACCCAGCAGTAGCTGT........................................................................ 191.000.00----------------------1.00---------------------------------------
...................................................................................................................................................................................................AGAACCCAGGGCTCCAGA..................................... 1830.330.33----------------------------------------------------------0.33---
.............................................................................................................................................................................................................................GTATAAGTGGTAGAG.............. 1580.120.12------------------------------------------------------------0.12-
..............................................................................................................................................................................................................GAGCCAGGACTAGAACCC.......................... 1890.110.11-------------------------------------------------------------0.11