ID: uc011dca.1_intron_1_0_chr5_148727989_f.3p
GENE: (2)
chr5:148730281-148730530+


(1)
AGO2.ip 		(14)
B-CELL 		(6)
BREAST 		(32)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ATATGCCTTCTGAGAGAGACACTGACTTGTCAGTTGGGTTGGGGTGGTAATCAGTGATGATCTCTGAGTCCTGTGTGGCAACCTTTCCACTTGCTGGACTACTCAGCATACTAGCCGTCTATCTAGGCCTTACCCAAACTCTATGCCCACGGGCAGAGTGATTTCCTCACAAACAATAAAAATAACTGGCTTCTCTGCAGGAATCCAGAGTTTCTGTAAGGACTTGGTGGAGGTGGCTGACATTTTGGAG
.............................................((.(((((........(((((...((((((.((((...........((((((.....)))))).....(((.........)))...............)))))))))))))))))))).))....................................................................................
............................................45.........................................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.................................................ATCAGTGATGATCTCTGAGT.....................................................................................................................................................................................201151.00151.0019.00-15.0011.00-6.007.007.007.007.005.005.005.005.005.00--3.004.00-3.003.003.00--2.00-2.00-2.002.002.002.001.001.002.002.001.002.00-1.00----1.001.00-1.00-1.001.00-1.001.00--1.001.00---------
.................................................ATCAGTGATGATCTCTG........................................................................................................................................................................................1715.005.00----------------4.00--------------------------1.00------------------------
.......................................................................................................................................................................................................................GTAAGGACTTGGTGGAGGTGGCT............2323.503.50----2.00--------------------0.50-------1.00----------------------------------
........TCTGAGAGAGACACTGACT...............................................................................................................................................................................................................................1913.003.00----3.00---------------------------------------------------------------
.................................................ATCAGTGATGATCTCTGAGG.....................................................................................................................................................................................2013.001.001.00----------------1.00--------------------------------------1.00-----------
.................................................ATCAGTGATGATCTCTGA.......................................................................................................................................................................................1812.002.00-----1.00-------------------------------1.00------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATTCTGG..302.000.00-2.00------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACAC.......252.000.00-2.00------------------------------------------------------------------
..................................................................................................................................................CCACGGGCAGAGTGATTT......................................................................................1812.002.00-----1.00---------------------------------1.00----------------------------
.................................................................................................................................................................................AAAAATAACTGGCTTCTCTGA....................................................212.000.00----------------------------2.00---------------------------------------
.................................................ATCAGTGATGATCTCTGATT.....................................................................................................................................................................................2012.002.00-----1.00----------------------------1.00---------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCCGAC.........232.000.00-2.00------------------------------------------------------------------
........................................................................................................................................................................................................................TAAGGACTTGGTGGAGGTGGCTGACATTTTGG..3221.501.50---------------0.50-------1.00--------------------------------------------
....................................................AGTGATGATCTCTGAGT.....................................................................................................................................................................................1721.501.50--0.50------------------------------------0.50--------------------0.50-------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATTTTGG..3021.501.50-1.00-------------0.50----------------------------------------------------
......................................................................................................................................................................................................................TGTAAGGACTTGGTGGAGGTGGC.............2321.001.00----1.00---------------------------------------------------------------
.................................................ATCAGTGATGATCTCTGAG......................................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------
.................................................ATCAGTGATGATCTCTGCGT.....................................................................................................................................................................................2011.005.00------------------------------------------1.00-------------------------
.................................................................................................................................................................................................................................GGTGGAGGTGGCTGAAATT......191.000.00--------------------------------------------1.00-----------------------
...............................................................................................................................................TGCCCACGGGCAGAGTGCCCA......................................................................................211.000.00-----------------------------------------------1.00--------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCCGGC.........231.000.00-1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................GTAAGGACTTGGTGGAGGTGGCTGACA........2721.001.00--------------------------------------------------------------0.500.50----
...............................................................................................................................................................................................................................TTGGTGGAGGTGGCTGACATTTGGAG.261.000.00-1.00------------------------------------------------------------------
...................................................................................................................................................................................................................TTCTGTAAGGACTTGGTGGAGGTGGCT............2721.001.00--------------------------1.00-----------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATTTCGG..3021.000.50-1.00------------------------------------------------------------------
...............................................TAATCAGTGATGATCTCTGAG......................................................................................................................................................................................2111.001.00-1.00------------------------------------------------------------------
........................................................................................................................................................................................................................TAAGGACTTGGTGGAGGTGGCTGACATTC.....291.000.00-----------------------1.00--------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATC......261.000.00---------------1.00----------------------------------------------------
.................................................................................................................................................................................................................GTTTCTGTAAGGACTTGGTGGAGG.................2421.001.00------------------------1.00-------------------------------------------
............................................................................................................................................................................................................................GACTTGGTGGAGGTGGCTGACATTCTG...271.000.00-----------------------1.00--------------------------------------------
.................................TTGGGTTGGGGTGGTGCG.......................................................................................................................................................................................................181.000.00----------------------------------------------------1.00---------------
.........................................................................................................................................................................................................................AAGGACTTGGTGGAGGTGGCCGAC.........241.000.00-1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACAAC......261.000.00-1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGAGC..............181.000.00-----------------------------------------------------------1.00--------
.................................................ATCAGTGATGATCTCTGAGTCC...................................................................................................................................................................................2211.001.001.00-------------------------------------------------------------------
......................................................................................................................................................................TCACAAACAATAAAAATAACT...............................................................2111.001.00-------------------1.00------------------------------------------------
.....................................................................................................................................................................................ATAACTGGCTTCTCTGCAGA.................................................201.000.00-------------------------------------------------1.00------------------
..................................TGGGTTGGGGTGGTAATCAGTGACG...............................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................GTGGAGGTGGCTGACATT......1821.001.00----1.00---------------------------------------------------------------
................................................AATCAGTGATGATCTCTGAGT.....................................................................................................................................................................................2111.001.00----------1.00---------------------------------------------------------
................................................AATCAGTGATGATCTCTGAG......................................................................................................................................................................................2011.001.00-------------------------------------------------------1.00------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGGAGC.............191.000.00-1.00------------------------------------------------------------------
................................................................................................................................................................................................................................TGGTGGAGGTGGCTGACATTTCG...231.000.00-1.00------------------------------------------------------------------
.........................................................TGATCTCTGAGTCCTGTGTGGCAACCTCTCC..................................................................................................................................................................311.000.00---------------1.00----------------------------------------------------
........................................................ATGATCTCTGAGTCCTGTGTGGCAAC........................................................................................................................................................................2611.001.00----1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................ACTTGGTGGAGGTGGCTGACATTCTGG..271.000.00---------------1.00----------------------------------------------------
.......................................................................................................................................................................................................................GTAAGGACTTGGTGGAGGTGGCTG...........2421.001.00----1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................GTGGAGGTGGCTGACCCCT.....191.000.00-------------------1.00------------------------------------------------
....................................................................................................................................................................................................................TCTGTAAGGACTTGGTGGAGGTGGC.............2520.500.50--------------------------0.50-----------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATTT.....2720.500.50---------------0.50----------------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGAC.........2320.500.50-0.50------------------------------------------------------------------
.........................................................................................................................................................................................................................AAGGACTTGGTGGAGGTGGCT............2120.500.50-------------------------------------------------------------0.50------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGACATTTTGGAG3220.500.50-0.50------------------------------------------------------------------
..............................................................................................................................................................................................................AGAGTTTCTGTAAGGACTTGGTGGAGGTGGCTGA..........3420.500.50------------------------0.50-------------------------------------------
.......................................................................................................................................................................................................................GTAAGGACTTGGTGGAGGTGGCTGA..........2520.500.50--------------------------0.50-----------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTGA..........2220.500.50----0.50---------------------------------------------------------------
..........................................................................................................................................................................................................................AGGACTTGGTGGAGGTGGCTG...........2120.500.50-----------0.50--------------------------------------------------------
......................................................................................................................................................................................................................TGTAAGGACTTGGTGGAGGTGGCT............2420.500.50--------------------------0.50-----------------------------------------
..............................................................................................................................................................................................................AGAGTTTCTGTAAGGACTTGGTGGAGGTGGCTGACA........3620.500.50------------------------0.50-------------------------------------------
................................................................................................................................................................................................................................TGGTGGAGGTGGCTGACA........1820.500.50---0.50----------------------------------------------------------------
....................................................................................................................................................................................................................TCTGTAAGGACTTGGTGGAGGTGGCTGAC.........2920.500.50-0.50------------------------------------------------------------------
................................................................................................................................................................................................................................TGGTGGAGGTGGCTGACATTTTGGAG2620.500.50-0.50------------------------------------------------------------------
.................................................................................................................................................................................................................GTTTCTGTAAGGACTTGGTGGAGGTGGCTGACA........3320.500.50------------------------0.50-------------------------------------------
...................................................................................................................................................................................................................................TGGAGGTGGCTGACATTT.....1820.500.50---0.50----------------------------------------------------------------
......................................................................................................................................................................................................................TGTAAGGACTTGGTG.....................1540.250.25----------------------------------------------------------------0.25---
.........................................................................................................................................................................................................................AAGGACTTGGTGGAGG.................1650.200.20---------------0.20----------------------------------------------------
........................................................................................................................................................................................................................TAAGGACTTGGTGGA...................1580.120.12------------------------------------------------------------------0.12-
................................................................TGAGTCCTGTGTGGC...........................................................................................................................................................................1590.110.11-------------------------------------------------------------------0.11

Antisense strand
ATATGCCTTCTGAGAGAGACACTGACTTGTCAGTTGGGTTGGGGTGGTAATCAGTGATGATCTCTGAGTCCTGTGTGGCAACCTTTCCACTTGCTGGACTACTCAGCATACTAGCCGTCTATCTAGGCCTTACCCAAACTCTATGCCCACGGGCAGAGTGATTTCCTCACAAACAATAAAAATAACTGGCTTCTCTGCAGGAATCCAGAGTTTCTGTAAGGACTTGGTGGAGGTGGCTGACATTTTGGAG
.............................................((.(((((........(((((...((((((.((((...........((((((.....)))))).....(((.........)))...............)))))))))))))))))))).))....................................................................................
............................................45.........................................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................................................................................................TTCTGTAAGGACTTGGCAG.................... 191.000.00-------------------1.00------------------------------------------------
......................................................................................................................................TGGGCATAGAGTTTG..................................................................................................... 1580.120.12-----------------------------------------------------------------0.12--