ID: uc011cxd.1_intron_1_0_chr5_130498370_r.5p
GENE: HINT1(1)
chr5:130500553-130500802-


(4)
AGO2.ip
(5)
B-CELL
(11)
BREAST
(17)
CELL-LINE
(2)
CERVIX
(3)
HEART
(2)
HELA
(4)
LIVER
(3)
OTHER
(24)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
TTTGAGGATGACCGGGTAGGTACTGGGCACCACCTCTCTCGCCTGCTGAGGTGGGTATCGTCCGCGGATCCTCGGGTTTCTCGCGGAGGGAGAGGAGGGGTCGCGAGTGTAGCGGCGACGGGAGGGGACCTGGCTGCCCTGGTCCAGCGGGCCCCCAGCCAGCGGACAGGGCCCGGGCACTCCGAGGCGGCCTGCCGGCGCGTGCCGGCGCTCCGGTTACTCGTTATCTGCCCCGGGCGCGGGCCAGGCC
...............................................................................................................((.((..(((...((..(((((..(((((.((((.((.(((.....))).))))))))))))))))..)))))..)).))..((((((....)))))).........................................
...........................................................................................................108..................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
................................................................................................................CGGCGACGGGAGGGGTG.........................................................................................................................17316.001.3313.00----1.00-2.00------------------------------------------------------------------
.................................................................................................................................................................................................GCCGGCGCGTGCCGGCG........................................17110.0010.00-10.00------------------------------------------------------------------------
...............................................................................................AGGGGTCGCGAGTGTAAACC.......................................................................................................................................205.000.00------------1.00---1.00-1.00-----------------------1.00-------1.00-----------------------
................................................................................................................CGGCGACGGGAGGGGTGC........................................................................................................................1834.001.33-----------------------1.00-----------------1.00-----1.00-----1.00--------------------
................................................................................................................CGGCGACGGGAGGGGT..........................................................................................................................1633.001.333.00-------------------------------------------------------------------------
......GATGACCGGGTAGGTACTGG................................................................................................................................................................................................................................2013.003.00---3.00----------------------------------------------------------------------
................................................................................................................CGGCGACGGGAGGGGTCCC.......................................................................................................................1933.001.33----3.00---------------------------------------------------------------------
........................................................................................................................GGAGGGGACCTGGCTGGGA...............................................................................................................193.000.00--------------1.00---------1.00----------1.00--------------------------------------
................................................................................................GGGGTCGCGAGTGTAAAC........................................................................................................................................182.000.00---------------------------------1.00-----1.00----------------------------------
................................................................................................................CGGCGACGGGAGGGG...........................................................................................................................1531.331.330.67----0.33---------------------------------------------------0.33----------------
.........................................................................................................................................................................................GGCGGCCTGCCGGCGCTTTC.............................................201.000.00--------------------------------1.00-----------------------------------------
.................................................................................................................GGCGACGGGAGGGGAGC........................................................................................................................171.000.00-----1.00--------------------------------------------------------------------
.....................................................................................................................ACGGGAGGGGACCTGGGGGC.................................................................................................................201.000.00----------------------------------1.00---------------------------------------
...GAGGATGACCGGGTAGGTACTG.................................................................................................................................................................................................................................2211.001.00---------------------------1.00----------------------------------------------
................................................................................................................................................................................................TGCCGGCGCGTGCCGGCGCTCCG...................................2311.001.00---------------1.00----------------------------------------------------------
................................................................................................................................................................................................TGCCGGCGCGTGCCGGCGCTCCGG..................................2411.001.00-------------------------------------1.00------------------------------------
.................................................................................................................................................................................................GCCGGCGCGTGCCGGCCG.......................................181.000.00-1.00------------------------------------------------------------------------
.........GACCGGGTAGGTACTGGGCACCACCTCT.....................................................................................................................................................................................................................2811.001.00-------------1.00------------------------------------------------------------
..................................................................................GCGGAGGGAGAGGAGGGGTA....................................................................................................................................................201.000.00-------------------1.00------------------------------------------------------
....................................................................................GGAGGGAGAGGAGGGGTTTTG.................................................................................................................................................211.000.00------------------------------1.00-------------------------------------------
..........................................CTGCTGAGGTGGGTATCGT.............................................................................................................................................................................................1911.001.00------------------------------------------------1.00-------------------------
......GATGACCGGGTAGGTACTGGGCACCACCTCCC....................................................................................................................................................................................................................321.000.00-------------------------------1.00------------------------------------------
..................................................................................................................................................................................................................................TCTGCCCCGGGCGCGCGC......181.000.00--1.00-----------------------------------------------------------------------
.....................................................................................................................ACGGGAGGGGACCTGGGG...................................................................................................................181.000.00---------1.00----------------------------------------------------------------
................................................................................................................CGGCGACGGGAGGGGAGC........................................................................................................................181.000.00--------------------------1.00-----------------------------------------------
........................................................ATCGTCCGCGGATCCTCGGG..............................................................................................................................................................................2011.001.00---1.00----------------------------------------------------------------------
...........................................................................................................................................................................................CGGCCTGCCGGCGCGTGCCGGCG........................................2311.001.00----------------------------------------------1.00---------------------------
............CGGGTAGGTACTGGGCACC...........................................................................................................................................................................................................................1911.001.00----------------------1.00---------------------------------------------------
................................................................................................GGGGTCGCGAGTGTAAACC.......................................................................................................................................191.000.00--------------------1.00-----------------------------------------------------
.......................................CGCCTGCTGAGGTGGGA..................................................................................................................................................................................................171.000.00--------1.00-----------------------------------------------------------------
...............GTAGGTACTGGGCACCACCTCTCTCGC................................................................................................................................................................................................................2711.001.00---------------------1.00----------------------------------------------------
................................................................................................................CGGCGACGGGAGGGGTGCC.......................................................................................................................1931.001.33--------------------------------------1.00-----------------------------------
....AGGATGACCGGGTAGGTACTGG................................................................................................................................................................................................................................2211.001.00---1.00----------------------------------------------------------------------
................................................................................................................CGGCGACGGGAGGGGGGG........................................................................................................................1831.001.33----------------------------------------1.00---------------------------------
...............................ACCTCTCTCGCCTGCTGAGGTG.....................................................................................................................................................................................................2211.001.00------------------------------------1.00-------------------------------------
...............................................................................CTCGCGGAGGGAGAGGAGGA.......................................................................................................................................................201.000.00---------------------------------------------1.00----------------------------
...........CCGGGTAGGTACTGGG...............................................................................................................................................................................................................................1620.500.50------------------------------------------------------0.50-------------------
..................................................................................GCGGAGGGAGAGGAGGGG......................................................................................................................................................1820.500.50-------------------------------------------------------0.50------------------
.................................................................................................................................................AGCGGGCCCCCAGCC..........................................................................................1550.200.20-----------------------------------------------------------0.20--------------

Antisense strand
TTTGAGGATGACCGGGTAGGTACTGGGCACCACCTCTCTCGCCTGCTGAGGTGGGTATCGTCCGCGGATCCTCGGGTTTCTCGCGGAGGGAGAGGAGGGGTCGCGAGTGTAGCGGCGACGGGAGGGGACCTGGCTGCCCTGGTCCAGCGGGCCCCCAGCCAGCGGACAGGGCCCGGGCACTCCGAGGCGGCCTGCCGGCGCGTGCCGGCGCTCCGGTTACTCGTTATCTGCCCCGGGCGCGGGCCAGGCC
...............................................................................................................((.((..(((...((..(((((..(((((.((((.((.(((.....))).))))))))))))))))..)))))..)).))..((((((....)))))).........................................
...........................................................................................................108..................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
.................................................................................................................................................................................................GCCGGCGCGTGCCGGCG........................................ 177.000.00--5.00----------------------------------------1.00-------1.00----------------------
.........................................................................................................................................................CCCAGCCAGCGGACAGC................................................................................ 172.000.00------2.00-------------------------------------------------------------------
.............................................................................................................................................................................AGGCCGCCTCGGAGTGCCCG......................................................... 2011.001.00-----------1.00--------------------------------------------------------------
.................................................................................................................................................................................................GCCGGCGCGTGCCGGCGCG...................................... 1911.000.00--1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................CGCCCGGGGCAGATAACG........... 1811.001.00----------------------------1.00---------------------------------------------
....................................................CCGCGGACGATACCC....................................................................................................................................................................................... 1511.001.00----------1.00---------------------------------------------------------------
......................................................................................................................................................................................................................................CCCCGGGCGCGGGCCTTT.. 181.000.00-------------------------1.00------------------------------------------------
.....................................................................................................................................................................................................................GGGGCAGATAACGAGTAACCG................ 2111.001.00--------------------------------------------1.00-----------------------------
.................................................................................................................................................................................................GCCGGCGCGTGCCGGCGCGG..................................... 2011.000.00--1.00-----------------------------------------------------------------------
....................................................GGGTATCGTCCGCGGATCCCT................................................................................................................................................................................. 211.000.00-------------------------------------------------1.00------------------------
....................................................ATCCGCGGACGATACCC..................................................................................................................................................................................... 1711.001.00-----------------------------1.00--------------------------------------------
.....................................................................................CCCCTCCTCTCCCTC...................................................................................................................................................... 1501.001.001.00-------------------------------------------------------------------------
.........................................................................................................................................................................................GGCGGCCTGCCGGCGCCCC.............................................. 190.880.00--------0.12---------------------------------------------------0.12--0.120.12-0.120.120.12-----
.........................................................................................................................................................................................GGCGGCCTGCCGGCGCCC............................................... 180.880.00----------------------------------------------------------0.25--0.120.12-------0.120.120.12-
.........................................................................................................................................................................................CGCCGGCAGGCCGCC.................................................. 1580.380.38-----------------------------------------------------------------0.12---0.12---0.12
............................................................................................................................................GGGGCCCGCTGGACC............................................................................................... 1530.330.33--------------------------------------------------------0.33-----------------