ID: uc011cvx.1_intron_1_0_chr5_112222881_r.5p
GENE: REEP5(4)
chr5:112227947-112228196-


(2)
AGO1.ip
(1)
AGO3.ip
(2)
B-CELL
(1)
BRAIN
(8)
CELL-LINE
(1)
CERVIX
(4)
HEART
(4)
HELA
(1)
KIDNEY
(3)
LIVER
(3)
OTHER
(12)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GCTTGGCATTCTTCTTCCGACTGGTACTGAACATATACATTGCCCCTCAGGTGAGGTTCCAAATTGCAGCTGACCTTGAACTGAATCACTTTCCCCACGTTCTTGAACTCGGGCAACACATCCTCATAGAAATCTAGGAACTGTTGGTAGGTTTCTTCCTCGCTGTACTCCAGGCTTGCGTCAGGGTCATAGTCATCCCTCCTGCACTGCTCCATTCCAAACGTTGTAAACATGCTCTTAATAAGAAGGG
.............................................................................................................................((((......(((((((.......)))))))......))))...((.(((....))).)).................................................................
.......................................................................................................................120..............................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189782SRR189786SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................TGTACTCCAGGCTTGTGC.....................................................................18263.000.00263.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGG.....................................................................1825.000.0025.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGT.....................................................................1821.000.0021.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGA.....................................................................1811.000.0011.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTTC.....................................................................1811.000.0011.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGGC....................................................................193.000.003.00---------------------------------------
............................................................................................................................CATAGAAATCTAGGAACTGTTGATA.....................................................................................................252.000.00------2.00---------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGAGC.....................................................................182.000.002.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTG......................................................................172.000.002.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTTGC....................................................................192.000.002.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGCC....................................................................192.000.002.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGAAGA....................................................................192.000.002.00---------------------------------------
.....................TGGTACTGAACATATACATTGCC..............................................................................................................................................................................................................2321.001.00------------1.00---------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTATA....................................................................191.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTTTC....................................................................191.000.001.00---------------------------------------
..................................................................................................................................................................CTGTACTCCAGGCTTGTGG.....................................................................191.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTTG.....................................................................181.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGGGC.....................................................................181.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGCGC.....................................................................181.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGCA....................................................................191.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGTGCG....................................................................191.000.001.00---------------------------------------
...................................................................................................................................................................TGTACTCCAGGCTTGGGG.....................................................................181.000.001.00---------------------------------------
..........CTTCTTCCGACTGGTACTGAAC..........................................................................................................................................................................................................................2220.500.50-------------------------0.50--------------
........TTCTTCTTCCGACTGGTACTGAA...........................................................................................................................................................................................................................2320.500.50--------------------------0.50-------------
...................................................................................................................................ATCTAGGAACTGTTGGTA.....................................................................................................1820.500.50----------------------0.50-----------------
...............TCCGACTGGTACTGAACA.........................................................................................................................................................................................................................1820.500.50-------------------------------0.50--------
................................................................................................ACGTTCTTGAACTCGGGC........................................................................................................................................1830.330.33----------------------------------0.33-----
.......................................................................................................................................AGGAACTGTTGGTAGGTTT................................................................................................1930.330.33--------------------------------------0.33-
.................CGACTGGTACTGAACA.........................................................................................................................................................................................................................1630.330.33-----------------------------------0.33----

Antisense strand
GCTTGGCATTCTTCTTCCGACTGGTACTGAACATATACATTGCCCCTCAGGTGAGGTTCCAAATTGCAGCTGACCTTGAACTGAATCACTTTCCCCACGTTCTTGAACTCGGGCAACACATCCTCATAGAAATCTAGGAACTGTTGGTAGGTTTCTTCCTCGCTGTACTCCAGGCTTGCGTCAGGGTCATAGTCATCCCTCCTGCACTGCTCCATTCCAAACGTTGTAAACATGCTCTTAATAAGAAGGG
.............................................................................................................................((((......(((((((.......)))))))......))))...((.(((....))).)).................................................................
.......................................................................................................................120..............................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189782SRR189786SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................AGGCTTGCGTCAGGGTCATAGTCATCCCTCCTGCACTGCTCCATTCCAAACGTTGTAAACATGCTCTTAATAAT..... 748.000.00-8.00--------------------------------------
...........................................................................................................................................................................................................TACAACGTTTGGAATGGAGCAGTGC...................... 2513.003.00---3.00------------------------------------
.............................................................................................................................................................................................TAGTCATCCCTCCTGCACTGCTCCATCG................................. 283.000.00--3.00-------------------------------------
...................................................................................................................................................................................................TCCCTCCTGCACTGCTCCACG.................................. 211.000.00-----1.00----------------------------------
...................................................................................................................................................................................................TCCCTCCTGCACTGCTCCATTCCAAC............................. 261.000.00--1.00-------------------------------------
...................................................................................................................................................................................................TCCCTCCTGCACTGCTCCACGAC................................ 231.000.00--1.00-------------------------------------
...............................................................................................................................................................................................GTCATCCCTCCTGCACTGCTCCATTCAT............................... 281.000.00--1.00-------------------------------------
...........................................................TCAGTTCAAGGTCAGCTGCAATTTG...................................................................................................................................................................... 2511.001.00----1.00-----------------------------------
.........................................................TCCAAATTGCAGCTGTTTG.............................................................................................................................................................................. 191.000.00----1.00-----------------------------------
...............................................................................................................................................................................................GTCATCCCTCCTGCACTGCTCCATTCATG.............................. 291.000.00-------------1.00--------------------------
..............TTCCGACTGGTACTGTCAT......................................................................................................................................................................................................................... 191.000.00--------1.00-------------------------------
...................................................................................................................................................................................................TCCCTCCTGCACTGCTCCATTCCACG............................. 261.000.00-----1.00----------------------------------
............................................................................................................................................................................GGCTTGCGTCAGGGTCATAGGAG....................................................... 231.000.00--1.00-------------------------------------
............................................................................................................................................CTGTTGGTAGGTTTCTTCCTCGCTGTCCC................................................................................. 291.000.00-----------1.00----------------------------
...................................................................................................................................................................................................AATGGAGCAGTGCAGGAGGGA.................................. 2120.500.50------------------0.50---------------------
.................................................................................................................................................................TGACGCAAGCCTGGAGTACAGC................................................................... 2220.500.50----------0.50-----------------------------
.......................................................................................................ATGTGTTGCCCGAGTTCA................................................................................................................................. 1820.500.50-------------------0.50--------------------
................................................................................................................................................................................ATGACTATGACCCTGACGCA...................................................... 2020.500.50---------0.50------------------------------
.....................................................................................................................................................................CCCTGACGCAAGCCTGGAGTA................................................................ 2120.500.50-----------------0.50----------------------
....................................................................................................................................................................TGACCCTGACGCAAGCCTGGAGTAC............................................................. 2520.500.50---0.50------------------------------------
.......................................................................................................................................................................GGATGACTATGACCCTGACGCAAGCCTGGAG.................................................... 3120.500.50------------------------0.50---------------
...................................................................................................................................................................................................TCCCTCCTGCACTGCTCCATTCG................................ 230.500.00--0.50-------------------------------------
.........GTTCAGTACCAGTCGGAAGAAGA.......................................................................................................................................................................................................................... 2320.500.50----------0.50-----------------------------
.........TTCAGTACCAGTCGGAAGAAGA........................................................................................................................................................................................................................... 2220.500.50-------0.50--------------------------------
.........................CCTCACCTGAGGGGCAATGTATATGTTCAGT.................................................................................................................................................................................................. 3120.500.50------------------------------0.50---------
........TTCAGTACCAGTCGGAAGAAGAA........................................................................................................................................................................................................................... 2320.500.50---------0.50------------------------------
.......................AGGGGCAATGTATATGTTCAGTAC........................................................................................................................................................................................................... 2420.500.50---------------------------0.50------------
............TATATGTTCAGTACCAGTCGGAAGA..................................................................................................................................................................................................................... 2520.500.50---0.50------------------------------------
......................................................................................................................................................................CCCTGACGCAAGCCTGGAGT................................................................ 2020.500.50---------------0.50------------------------
.........................................................................................................ATGAGGATGTGTTGCCCGAGTT........................................................................................................................... 2220.500.50-----------------------------0.50----------
..........................................................................................................................................................................................................CGTTTGGAATGGAGCAGTGCA........................... 2120.500.50--------------------0.50-------------------
....GTTCAGTACCAGTCGGAAGAAGAATGCC.......................................................................................................................................................................................................................... 2820.500.50--------------0.50-------------------------
....ACCAGTCGGAAGAAGAATGCC................................................................................................................................................................................................................................. 2120.500.50----------------------------0.50-----------
...........................................................................................................................................................................TATGACCCTGACGCAAGCCT........................................................... 2020.500.50-----------------------0.50----------------
......................................................................................................................................................................................................ACGTTTGGAATGGAGCAGTGCAGGAG.......................... 2620.500.50----------------0.50-----------------------
....................................................................................................................................................................................ATGACTATGACCCTGA...................................................... 1630.330.33--------------------------------0.33-------
.................................................................................................................................................AGCGAGGAAGAAACCTACC...................................................................................... 1930.330.33--------------0.33-------------------------
.........................................................................................................................................................TGGAGTACAGCGAGGAAGA.............................................................................. 1930.330.33-------------------------------------0.33--
..........................................................................................................................................................CCTGGAGTACAGCGAGGAAG............................................................................ 2030.330.33------------------------------------0.33---
.........CCAGTCGGAAGAAGA.................................................................................................................................................................................................................................. 1540.250.25---------------------------------------0.25