ID: uc011cua.1_intron_3_0_chr5_87968847_r.3p
GENE: LINC00461(1)
chr5:87968797-87969046-


(1)
B-CELL 		(8)
BRAIN 		(7)
CELL-LINE 		(4)
CERVIX 		(2)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
TESTES

Sense strand
CCCAGAAGGGAAGACCCATTTAAACTATTTTAGACGCAATCAACCAAGAATCACCATGTGGAATTGAGCGGCAGTTTTAAATGTGTTGAGCAGGGGAGAGGAATGATGAGAAAAACATTTTTTTTTTTTTTTTTGGAGACGCCGAAAGAAGCCTGTTTGTGTGCTGCGGCCGTGCTGTGACTTTGGATCTTGTCTTTCAGCCGGCGCCTCGGTTCCTGCCCAGCTGGATTTGGGGGGCAGCATTGCCTGG
..........................................................((((((((.....))))))))...(((((...(((..((((((((.((((.......))))...))))))))..)))..)))))............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		GSM532886(GSM532886)
G850T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................ACATTTTTTTTTTTTTTTTTAAAG................................................................................................................247.000.00-3.00--4.00-----------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATT.................................................................................................................235.000.00-3.00--1.00--------------------1.00--
..................................................................................................................ACATTTTTTTTTTTTTTTTTACTC................................................................................................................245.000.002.00--3.00------------------------
.........................................AACCAAGAATCACCATGTGGAATTGAGCGGCAG................................................................................................................................................................................3315.005.00--5.00-------------------------
.................................................................................................GAGGAATGATGAGAAGAAA......................................................................................................................................1905.001.00------------2.00---1.00-1.00--1.00------
..................................................................................................................ACATTTTTTTTTTTTTTTTTGGGG................................................................................................................243.000.003.00---------------------------
..........................................ACCAAGAATCACCATGTGGAATTGAGCGGCAG................................................................................................................................................................................3213.003.00--3.00-------------------------
.......................................................ATGTGGAATTGAGCGGCA.................................................................................................................................................................................1813.003.00-----1.00---2.00------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGGGC...............................................................................................................233.000.002.00--1.00------------------------
.......................................................ATGTGGAATTGAGCGGCAGTT..............................................................................................................................................................................2113.003.00-----1.00---1.00----1.00-------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTAATT................................................................................................................242.000.00-1.00--1.00-----------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGACCG............................................................................................................262.000.00---2.00------------------------
......................................................CATGTGGAATTGAGCGGCA.................................................................................................................................................................................1912.002.00-----1.00----1.00-----------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATTT................................................................................................................242.000.00-1.00--1.00-----------------------
.................................................ATCACCATGTGGAATTGAGCGGCA.................................................................................................................................................................................2412.002.00-----1.00----1.00-----------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATG.................................................................................................................232.000.00-1.00--1.00-----------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTACCC................................................................................................................242.000.002.00---------------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAACC..............................................................................................................242.000.001.00-----1.00---------------------
.......................................................ATGTGGAATTGAGCGGCAGTTTTT...........................................................................................................................................................................2412.001.00-------1.00--1.00-----------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGGCCC..............................................................................................................242.000.001.00--1.00------------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATAG................................................................................................................242.000.00-2.00--------------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATCG................................................................................................................242.000.00-2.00--------------------------
..................................................................................................................................................................GCTGCGGCCGTGCTGTGACTTTGG................................................................2411.001.00--1.00-------------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGAGAGG...........................................................................................................271.000.001.00---------------------------
..............................TAGACGCAATCAACCAAGAATCACC...................................................................................................................................................................................................2511.001.00-------------1.00--------------
...................................................................................................................CATTTTTTTTTTTTTTTTTGGCGG...............................................................................................................241.000.001.00---------------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGCG..............................................................................................................241.000.001.00---------------------------
.......................................................ATGTGGAATTGAGCGGCAGGTTA............................................................................................................................................................................231.000.00---------------1.00------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTACAC................................................................................................................241.000.00-1.00--------------------------
...................................................................................................................CATTTTTTTTTTTTTTTTTGGACCCC.............................................................................................................261.000.00-1.00--------------------------
.................................................................................................................AACATTTTTTTTTTTTTTTTTAAT.................................................................................................................241.000.00----1.00-----------------------
.................................................................................................GAGGAATGATGAGAAGAA.......................................................................................................................................1801.001.00--------------------------1.00-
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGTCG.............................................................................................................251.000.00------1.00---------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGGATA..............................................................................................................241.000.001.00---------------------------
.................................................................................................GAGGAATGATGAGAAGA........................................................................................................................................1701.001.00------------------------1.00---
................................................................................................................AAACATTTTTTTTTTTTTTTATTT..................................................................................................................241.000.00------1.00---------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGAAAG............................................................................................................261.000.001.00---------------------------
........................................................TGTGGAATTGAGCGGCAGGT..............................................................................................................................................................................201.000.00-------1.00--------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGACCCT.............................................................................................................251.000.00---1.00------------------------
.......................................................................................GAGCAGGGGAGAGGATGA.................................................................................................................................................181.000.00-----------------------1.00----
...............................................................................................................AAAACATTTTTTTTTTTTTTTTTTAT.................................................................................................................261.000.00----1.00-----------------------
................................................................................................................AAACATTTTTTTTTTTTTTTTTGGGGAG..............................................................................................................281.000.00---1.00------------------------
........................................................TGTGGAATTGAGCGGCAGTTTTAAAT........................................................................................................................................................................2611.001.00-------------1.00--------------
.........................................................GTGGAATTGAGCGGCAGTTTT............................................................................................................................................................................2111.001.00--1.00-------------------------
...................................................................................................................................................................CTGCGGCCGTGCTGTGACTTTGG................................................................2311.001.00--1.00-------------------------
..........................................ACCAAGAATCACCATGTGGAATTGAGCGGCAGT...............................................................................................................................................................................3311.001.00--1.00-------------------------
..................................................TCACCATGTGGAATTGAGCGGCAGGT..............................................................................................................................................................................261.000.00-------1.00--------------------
....................................................ACCATGTGGAATTGAGCGGCAGTT..............................................................................................................................................................................2411.001.00---------------1.00------------
...................................................................................................................CATTTTTTTTTTTTTTTTTGGAGGAG.............................................................................................................261.000.00---1.00------------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATA.................................................................................................................231.000.00-1.00--------------------------
..........................................................................................................................TTTTTTTTTTTTGGAGACGTGGA.........................................................................................................231.000.001.00---------------------------
........................................................................................AGCAGGGGAGAGGAATGATGAGAA..........................................................................................................................................2411.001.00-----1.00----------------------
.................................................................................................................AACATTTTTTTTTTTTTTTTCCTA.................................................................................................................241.000.001.00---------------------------
.................................................................................................GAGGAATGATGAGAA..........................................................................................................................................1501.001.00-------------------1.00--------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGGATT..............................................................................................................241.000.001.00---------------------------
......................................................CATGTGGAATTGAGCGGC..................................................................................................................................................................................1811.001.00-----1.00----------------------
...............................................................................................GAGAGGAATGATGAGAGTG........................................................................................................................................191.000.00-----------1.00----------------
.....................................................CCATGTGGAATTGAGCGGCAGTTT.............................................................................................................................................................................2411.001.00-------1.00--------------------
................................................AATCACCATGTGGAATTGAGCGGCAGT...............................................................................................................................................................................2711.001.00--------1.00-------------------
.................................................................................................................AACATTTTTTTTTTTTTTTTCGCT.................................................................................................................241.000.00------1.00---------------------
......................................................................................................................................................................................................................................TGGGGGGCAGCATTGCGGCT201.000.00----------------------1.00-----
..................................................................................................................ACATTTTTTTTTTTTTTTTTATTG................................................................................................................241.000.00----1.00-----------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTATAT................................................................................................................241.000.00-1.00--------------------------
......................................................................................................................................................................................................................................TGGGGGGCAGCATTGTTGC.191.000.00--------------------1.00-------
...................................................................................................................CATTTTTTTTTTTTTTTTTGGAAGC..............................................................................................................251.000.00---1.00------------------------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGAGAAAGA...........................................................................................................271.000.00---1.00------------------------
.........................................................GTGGAATTGAGCGGCAGTTTTAAA.........................................................................................................................................................................2411.001.00--------1.00-------------------
...............................................................................................................................................................................................................................CTGGATTTGGGGGGCAGCA........1911.001.00-----------------1.00----------
....................................................................................................................ATTTTTTTTTTTTTTTTTGGGAGC..............................................................................................................241.000.001.00---------------------------
......................................................CATGTGGAATTGAGCGGCAGGTTT............................................................................................................................................................................241.000.00--------------1.00-------------
........................................................TGTGGAATTGAGCGGCAGTT..............................................................................................................................................................................2011.001.00-----1.00----------------------
..................................................................................................................ACATTTTTTTTTTTTTTTTTGGAAACG.............................................................................................................271.000.001.00---------------------------
.....................................................CCATGTGGAATTGAGCGGC..................................................................................................................................................................................1911.001.00--1.00-------------------------
........................................................TGTGGAATTGAGCGGCAGTTTTAAAAGTG.....................................................................................................................................................................291.000.00--------1.00-------------------
.......................................................ATGTGGAATTGAGCGGCAGTTTT............................................................................................................................................................................2311.001.00-----1.00----------------------
............................................................................................GGGGAGAGGAATGATGA.............................................................................................................................................1730.330.33--------0.33-------------------
.................................................................................................................AACATTTTTTTTTTTTTTTTTGGA.................................................................................................................2430.330.33------0.33---------------------

Antisense strand
CCCAGAAGGGAAGACCCATTTAAACTATTTTAGACGCAATCAACCAAGAATCACCATGTGGAATTGAGCGGCAGTTTTAAATGTGTTGAGCAGGGGAGAGGAATGATGAGAAAAACATTTTTTTTTTTTTTTTTGGAGACGCCGAAAGAAGCCTGTTTGTGTGCTGCGGCCGTGCTGTGACTTTGGATCTTGTCTTTCAGCCGGCGCCTCGGTTCCTGCCCAGCTGGATTTGGGGGGCAGCATTGCCTGG
..........................................................((((((((.....))))))))...(((((...(((..((((((((.((((.......))))...))))))))..)))..)))))............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		GSM532886(GSM532886)
G850T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................AGCGGCAGTTTTAAATTTT..................................................................................................................................................................... 191.000.00-----------1.00----------------
.....................................................................................................................................................AGCACACAAACAGGCT..................................................................................... 1670.140.14---------------------------0.14