ID: uc011ctx.1_intron_6_0_chr5_87502960_r.3p
GENE: (1)
chr5:87502910-87503159-


(4)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(7)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
ACTTAGTATATGGGTGCTCTTTTCCTTAATTTAAAAGTGTTTTAAACTCCACTTGGAAATAAATGTTGTAGTCAAATTTTATTGCAATCAAGTCCTATAAAGATCATTGTGTATAGCTCCTATAAATTTATTGTGGTTTTTCCTGAACTTTTCCTTCTGCAGCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGTTTGTGTCACCTTTGGATTTTTTTTC
.....................................................................................................................................(((((......(((((((..((.....)).)))))))..........))))).................................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR343334SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189783SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343335SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................TTTCCTGAACTTTTCCTTCTGCAGA.......................................................................................25116.007.00-11.00-----1.00--------1.00----1.00-1.00----1.00-------
...................................................................................................AAGATCATTGTGTATAGCTCCTATAAATTTATTGTGGTTTTTCCTGAACTTTTCCTTCTGCAG........................................................................................63112.0012.0012.00-----------------------------------
..........................................................................................................................................TTTCCTGAACTTTTCCTTCTGCAG........................................................................................2417.007.00------1.001.001.00----1.00-----1.00--1.00-------1.00-----
.................................................................................................................................................................................ATTAACTACACACTATTTTAAAG..................................................2314.004.00---2.00-----------1.00------------------1.00-
..............................................................................................................................................................................TTCATTAACTACACACTATTTTAAAG..................................................2612.002.00--2.00---------------------------------
..........................................................................................................................................TTTCCTGAACTTTTCCTTCTGCAGAA......................................................................................2611.007.00--------------------------------1.00---
..................................................................................................................................TTGTGGTTTTTCCTGAACTTTTCCTTCTGCAG........................................................................................3211.001.00-----------1.00------------------------
..........................................................................................................................................................................................................................................CTTTGGATTTTTTTTCCTAG201.000.00----1.00-------------------------------
............................................................................................................................................TCCTGAACTTTTCCTTCTGCAGA.......................................................................................231.000.00-1.00----------------------------------
.......................................................................................................................................................................TTCTATTTTCATTAACTACACACTATTTTAA....................................................3111.001.00----1.00-------------------------------
.................................................................................................................................................................................................TTTAAAGTAGAAGATGGTATTG...................................221.000.00------------1.00-----------------------
...................................................................................................................................................................................................TAAAGTAGAAGATGGTGGAGTT.................................221.000.00--------------------1.00---------------
........................................................................................................................................................................TCTATTTTCATTAACTACACACTATTTTAAAG..................................................3211.001.00----1.00-------------------------------
...........................................................................................................................................................................................................AAGATGGTGGTGAAAGATCTGTT........................2311.001.00--------1.00---------------------------
...................................................................................................................................................................................................TAAAGTAGAAGATGGTGGAGGT.................................221.000.00-------------------------1.00----------
.........................................................................................................................................TTTTCCTGAACTTTTCCTTCTGCAG........................................................................................2511.001.00---------------------------1.00--------
...................................AGTGTTTTAAACTCCATCTA...................................................................................................................................................................................................201.000.00--1.00---------------------------------
.............................................................................................................................................................................................................GATGGTGGTGAAAGATCTGTTTGT.....................2411.001.00------1.00-----------------------------
...............................................................................................................................................................................................ATTTTAAAGTAGAAGATGGTGGTGA..................................2511.001.00--------------1.00---------------------
...................................................................................................................................................................................TAACTACACACTATTT.......................................................1611.001.00---------1.00--------------------------
...........................................................................................................................................................................ATTTTCATTAACTACACACTATTTTAAA...................................................2811.001.00---------------------------------1.00--
.....................................................................................................................................................................................................AAGTAGAAGATGGTGGTGAAAGAT.............................2411.001.00--------------------------1.00---------
..........................................................................................................................................TTTCCTGAACTTTTCCTTCTGCAGCAAAGAAA................................................................................321.000.00----------1.00-------------------------
.......................................................................................................................................................................TTCTATTTTCATTAACTACACACTATTTTAAA...................................................3211.001.00--1.00---------------------------------
.........................................................................................................................................................................................................AGAAGATGGTGGTGAAAGA..............................1911.001.00-----------------1.00------------------
...................................................................................................................................................................................................TAAAGTAGAAGATGGTGGAGTG.................................221.000.00------------------1.00-----------------
...........................................................................................................................................TTCCTGAACTTTTCCTTCTGCAG........................................................................................2311.001.00-----------------------------1.00------
...................TTTTCCTTAATTTAAATC.....................................................................................................................................................................................................................181.000.00-----------------------------------1.00
...................................................................................................................................................................................................TAAAGTAGAAGATGGTGGCGG..................................211.000.00------------------------1.00-----------
.................................................................................................................................................................................ATTAACTACACACTATTAAAG....................................................211.000.00---1.00--------------------------------
.......................................................................................................................................................................................TACACACTATTTTAAAG..................................................1730.670.67---0.33-----0.33--------------------------

Antisense strand
ACTTAGTATATGGGTGCTCTTTTCCTTAATTTAAAAGTGTTTTAAACTCCACTTGGAAATAAATGTTGTAGTCAAATTTTATTGCAATCAAGTCCTATAAAGATCATTGTGTATAGCTCCTATAAATTTATTGTGGTTTTTCCTGAACTTTTCCTTCTGCAGCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGTTTGTGTCACCTTTGGATTTTTTTTC
.....................................................................................................................................(((((......(((((((..((.....)).)))))))..........))))).................................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR343334SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189783SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343335SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................TCACCTTTGGATTTTTTTTTTC 222.000.00-----2.00------------------------------
........................................................................................................................................................................................ACACACTATTTTAAAGCT................................................ 181.000.00-------------------------------1.00----