ID: uc011cmb.1_intron_12_0_chr5_889763_r.3p
GENE: (3)
chr5:889713-889962-


(1)
AGO1.ip 		(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TCCTGCTGTGGGGGTGCCCTTTCTACCCGGCTGAGCTTGGTGGGAGCCAAGGCTGAGTCGGATGTATCTTTATATCCCCAGTTCTCGGTGGAACTTAAAATGCTGTGAGACACCAGACAGACAGATACTGTGAACTTGGAGCTCTCTAATGAAGGGATACCAAAGTCTTGTATTCAATTTTTTTTTCCTTAAATTGTCAGCCGAAAATGAGAGCACACCTATTCAGCAACTCCTGGAACACTTCCTCCGC
..................................................(((......(((((((....)))))))(((((((..((((...((((........)))).))))..((((.......))))))))).)).)))...........................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577590(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................GACAGACAGATACTGTGAACTTGG...............................................................................................................24110.0010.0010.00----------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAGGG..............................................................................................2419.009.008.00---------------------------------1.00------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAGG...............................................................................................2319.009.008.00-------------------------1.00--------------
.........................................................................................................................CAGATACTGTGAACTTG................................................................................................................1716.006.00-6.00---------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAGGGA.............................................................................................2516.006.005.00----------1.00-----------------------------
.................................................................................TTCTCGGTGGAACTTCCA.......................................................................................................................................................185.000.00--5.00--------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAGGGT.............................................................................................2514.009.004.00----------------------------------------
...............................................................................AGTTCTCGGTGGAACCTC.........................................................................................................................................................184.000.00---1.002.00--------------------1.00---------------
.........................................................................................................................CAGATACTGTGAACTTGGAGCTCT.........................................................................................................2414.004.004.00----------------------------------------
...............................................................................................................................................................................................AATTGTCAGCCGAAAATGAGAGCACA.................................2613.003.003.00----------------------------------------
......................................................................................................................AGACAGATACTGTGAACTTGGAGCT...........................................................................................................2513.003.003.00----------------------------------------
........................................................................................................................ACAGATACTGTGAACTTGG...............................................................................................................1913.003.00-----3.00-----------------------------------
...................................................................................................................GACAGACAGATACTGTGAACTT.................................................................................................................2213.003.003.00----------------------------------------
......................................................................................................................AGACAGATACTGTGAACTTGGAGC............................................................................................................2412.002.002.00----------------------------------------
..........................................................................................................................AGATACTGTGAACTTGGAGCTCTTTT......................................................................................................262.000.002.00----------------------------------------
...............................................................................AGTTCTCGGTGGAACCTCC........................................................................................................................................................192.000.00---2.00-------------------------------------
..................................................................................TCTCGGTGGAACTTAAAATG....................................................................................................................................................2012.002.00---------2.00-------------------------------
.....................................................................................................GCTGTGAGACACCAGACAGACAGATACTGTGAACTTGGAGCTCTCTAATGAAGGGATACCAAA......................................................................................6312.002.00--------------2.00--------------------------
...............................................................................AGTTCTCGGTGGAACCT..........................................................................................................................................................172.000.00----2.00------------------------------------
...............................................................................AGTTCTCGGTGGAACC...........................................................................................................................................................162.000.00------1.00----1.00-----------------------------
.....................................................................................................................................ACTTGGAGCTCTCTAATGAAGGG..............................................................................................2311.001.001.00----------------------------------------
...............................................................................................................................................................................................AATTGTCAGCCGAAAATGAGAG.....................................2211.001.001.00----------------------------------------
..........................................................................................................................AGATACTGTGAACTTGGAGCTCTCTA......................................................................................................2611.001.00---1.00-------------------------------------
..........................................................................................................................AGATACTGTGAACTTGGAGCTCTC........................................................................................................2411.001.00---------------------------1.00-------------
.........................................................................................................................CAGATACTGTGAACTTGGAGC............................................................................................................2111.001.00---------------------------------1.00-------
.........................................................................................................TGAGACACCAGACAGACAGATACT.........................................................................................................................2411.001.001.00----------------------------------------
.......................................................................................................................GACAGATACTGTGAACTTGGAGCT...........................................................................................................2411.001.001.00----------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAG................................................................................................2211.001.001.00----------------------------------------
.................................................................................................................................GTGAACTTGGAGCTCTCTAATGAAG................................................................................................2511.001.001.00----------------------------------------
...........................................................................................................................GATACTGTGAACTTGGAGCTCTC........................................................................................................2311.001.00-------------1.00---------------------------
.................................................................................................................................................................................TTTTTTTTTCCTTAAATTCACT...................................................221.000.00-------------------1.00---------------------
......................................................................................................................................................................................................................ACACCTATTCAGCAACTCCT................2011.001.00---------------1.00-------------------------
...................................................................................................ATGCTGTGAGACACCAGACAGACAGAC............................................................................................................................271.000.00------------1.00----------------------------
.........................................................................................................................CAGATACTGTGAACTTGGAGCTCTCTA......................................................................................................2711.001.00-----------------1.00-----------------------
.................................................................................................................................................................................TTTTTTTTTCCTTAAATTGTCT...................................................221.000.00-------1.00---------------------------------
........................................................................................................................................................................................................CCGAAAATGAGAGCACACC...............................1911.001.00----------1.00------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGA..................................................................................................2011.001.00----------1.00------------------------------
..........................................................................................................................................................GGATACCAAAGTCTTGG...............................................................................171.000.00------1.00----------------------------------
...........................................................................................................................................................................ATTCAATTTTTTTTTCCTTAAATTGCCAG..................................................291.000.00-----------------------------------1.00-----
.............................................................................................................................................................................................TAAATTGTCAGCCGAAAATGAGAG.....................................2411.001.001.00----------------------------------------
...................................................................................................................GACAGACAGATACTGTGAACTTGGA..............................................................................................................2511.001.00--------------------------------1.00--------
........................................................GTCGGATGTATCTTTATATCAT............................................................................................................................................................................221.000.00-------------------------------------1.00---
.......................................................................................................................GACAGATACTGTGAACTTGGAGCTCT.........................................................................................................2611.001.001.00----------------------------------------
.................................................................................................AAATGCTGTGAGACACCAGACAGACAGA.............................................................................................................................2811.001.001.00----------------------------------------
..........................................................................................................................AGATACTGTGAACTTGGAGCTCTCT.......................................................................................................2511.001.00------1.00----------------------------------
....................TTCTACCCGGCTGAGAGGT...................................................................................................................................................................................................................191.000.00----------------------1.00------------------
..................................................................................................................AGACAGACAGATACTGTGAACT..................................................................................................................2211.001.00-------------1.00---------------------------
..............................................................................CAGTTCTCGGTGGAAC............................................................................................................................................................1611.001.00------------------------1.00----------------
..........................................................................................................................................................................TATTCAATTTTTTTTTCCTTTTAG........................................................241.000.00--------------------------------------1.00--
.....................................................TGAGTCGGATGTATCTTTATAT...............................................................................................................................................................................2211.001.00---------------------1.00-------------------
........................................................................................................................................TGGAGCTCTCTAATGAAG................................................................................................1811.001.00--------------------1.00--------------------
.......................................................................................................................GACAGATACTGTGAACTTGGAGC............................................................................................................2311.001.00-----1.00-----------------------------------
...........................................GAGCCAAGGCTGAGTCGGATGTA........................................................................................................................................................................................2311.001.00-----------------------------1.00-----------
..................................................GGCTGAGTCGGATGTATC......................................................................................................................................................................................1811.001.00----------------------------1.00------------
...............................................................................................................ACCAGACAGACAGATACTGTGAACT..................................................................................................................2511.001.00----------------1.00------------------------
.........................................................................................................................CAGATACTGTGAACTTGGAGCTCTCTAATG...................................................................................................3011.001.00------------------------------------1.00----
................................................................................................................................................................CAAAGTCTTGTATTCATT........................................................................181.000.00-------1.00---------------------------------
..........................................................................................................................AGATACTGTGAACTTGGAGCTCTT........................................................................................................241.000.001.00----------------------------------------
........................................................................................................................................................................TGTATTCAATTTTTTTAGG...............................................................191.000.00-------------------------------1.00---------
......................................................................................GGTGGAACTTAAAATGCTGTGAGACACC........................................................................................................................................2811.001.00-----------------------1.00-----------------
....................................................................................................................................................................................TTTTTTCCTTAAATTGTCAGA.................................................211.000.00------------------------------1.00----------
........................................................................................................................ACAGATACTGTGAACTTGGAGCT...........................................................................................................2311.001.00------------------1.00----------------------
.............................................................................................................................................................................TCAATTTTTTTTTCCTTACAAG.......................................................221.000.00-------1.00---------------------------------
........................................................................................................................ACAGATACTGTGAACTTGGAGCTCT.........................................................................................................2511.001.001.00----------------------------------------
.......................................................................................GTGGAACTTAAAATGCTGTGAGAC...........................................................................................................................................2411.001.001.00----------------------------------------
.................................AGCTTGGTGGGAGCCAAGGCTGAGTCGG.............................................................................................................................................................................................2811.001.00------------1.00----------------------------
......................................................................................................................AGACAGATACTGTGAACTTGGAG.............................................................................................................2311.001.001.00----------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATGAAGGT..............................................................................................2411.009.001.00----------------------------------------
....................................................................................................................................AACTTGGAGCTCTCTAATG...................................................................................................1911.001.00--------1.00--------------------------------
....................................................CTGAGTCGGATGTAT.......................................................................................................................................................................................1520.500.50---------------------------------------0.50-
................................................................................................................................................................................ATTTTTTTTTCCTTAAATT.......................................................1940.500.50--------0.50--------------------------------
..........................................................................................................................................................GGATACCAAAGTCTT.................................................................................1590.110.11----------------------------------------0.11

Antisense strand
TCCTGCTGTGGGGGTGCCCTTTCTACCCGGCTGAGCTTGGTGGGAGCCAAGGCTGAGTCGGATGTATCTTTATATCCCCAGTTCTCGGTGGAACTTAAAATGCTGTGAGACACCAGACAGACAGATACTGTGAACTTGGAGCTCTCTAATGAAGGGATACCAAAGTCTTGTATTCAATTTTTTTTTCCTTAAATTGTCAGCCGAAAATGAGAGCACACCTATTCAGCAACTCCTGGAACACTTCCTCCGC
..................................................(((......(((((((....)))))))(((((((..((((...((((........)))).))))..((((.......))))))))).)).)))...........................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577590(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................TTATATCCCCAGTTCCGA................................................................................................................................................................... 181.000.00--------1.00--------------------------------