| (1) AGO1.ip | (1) AGO1.ip OTHER.mut | (2) AGO2.ip | (2) B-CELL | (1) BRAIN | (4) BREAST | (13) CELL-LINE | (10) LIVER | (5) OTHER | (4) SKIN | (1) UTERUS |
| GCCAATGCAGGTGGATCACTTGAGCCTAGGAATTTGAGACCAGTCTGGGCAATGTGATGAAACCCATCTCTACAAAAAAATATGAAAGTATCTGTGTGTGTGTGTTGCTGTGTAGTGGACTACAGAACTTTAGAGGCAGTCACTTATTTGAATCCCATTGTCGTAACTTTCTACTATTTTATTTTTCCACTGTGACTCAGGGAGATTCAGGTGGTCCCTTAGTTTGCAAACACAATGGAATGTGGCGTTT ................................................................................................................(((((((...........((((((.(((.((.....((.....)).....)).))).))).))).........))))))).......................................................... ............................................................................................................109........................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR343334 | TAX577580(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189787 | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR191592(GSM715702) 59genomic small RNA (size selected RNA from t. (breast) | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR039618(GSM531981) HBV(+) Side Tissue Sample 1. (liver) | SRR191434(GSM715544) 171genomic small RNA (size selected RNA from . (breast) | SRR191489(GSM715599) 147genomic small RNA (size selected RNA from . (breast) | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR387910(GSM843862) antibody for ip: Ago2. (ago2 cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR189786 | SRR038862(GSM458545) MM472. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................AGTGGACTACAGAACTTTGT..................................................................................................................... | 20 | 1 | 39.00 | 5.00 | 10.00 | 1.00 | 4.00 | 4.00 | 3.00 | 1.00 | 1.00 | - | 3.00 | - | 2.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | 1.00 | - | 1.00 | 1.00 | - | - | 1.00 | - | - | 1.00 | 1.00 | - | - |
| .................................................................................................................AGTGGACTACAGAACTTTG...................................................................................................................... | 19 | 1 | 6.00 | 5.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................AGTGGACTACAGAACTTTGA..................................................................................................................... | 20 | 1 | 6.00 | 5.00 | 1.00 | 1.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................AGTGGACTACAGAACTTT....................................................................................................................... | 18 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................AGTGGACTACAGAACTTTGTT.................................................................................................................... | 21 | 1 | 4.00 | 5.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................AGTGGACTACAGAACTTTGG..................................................................................................................... | 20 | 1 | 3.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................................................................TATTTTTCCACTGTGACAG.................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................ACAGAACTTTAGAGGCAGTTACT.......................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................AGTGGACTACAGAACTTTTTT.................................................................................................................... | 21 | 1 | 1.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................AGGTGGTCCCTTAGTTTGCAAACACAAC.............. | 28 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................ATTTTTCCACTGTGACTTG................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................TATCTGTGTGTGTGTGTTGACA............................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................GGACTACAGAACTTTACCCC.................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..................CTTGAGCCTAGGAATTTGAG.................................................................................................................................................................................................................... | 20 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................ACTACAGAACTTTAGAGGCAGGGA............................................................................................................ | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................TAGTGGACTACAGAAC.......................................................................................................................... | 16 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| GCCAATGCAGGTGGATCACTTGAGCCTAGGAATTTGAGACCAGTCTGGGCAATGTGATGAAACCCATCTCTACAAAAAAATATGAAAGTATCTGTGTGTGTGTGTTGCTGTGTAGTGGACTACAGAACTTTAGAGGCAGTCACTTATTTGAATCCCATTGTCGTAACTTTCTACTATTTTATTTTTCCACTGTGACTCAGGGAGATTCAGGTGGTCCCTTAGTTTGCAAACACAATGGAATGTGGCGTTT ................................................................................................................(((((((...........((((((.(((.((.....((.....)).....)).))).))).))).........))))))).......................................................... ............................................................................................................109........................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR343334 | TAX577580(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189787 | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR191592(GSM715702) 59genomic small RNA (size selected RNA from t. (breast) | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR039618(GSM531981) HBV(+) Side Tissue Sample 1. (liver) | SRR191434(GSM715544) 171genomic small RNA (size selected RNA from . (breast) | SRR191489(GSM715599) 147genomic small RNA (size selected RNA from . (breast) | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR387910(GSM843862) antibody for ip: Ago2. (ago2 cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR189786 | SRR038862(GSM458545) MM472. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................AGTAGAAAGTTACGACAATGGG........................................................................... | 22 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TTGAGCCTAGGAATTTGAGACCAGCGG............................................................................................................................................................................................................ | 27 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................TAGTAGAAAGTTACGACAATG.......................................................................... | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................AAACCCATCTCTACAAAAAAATGG....................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................GAAACCCATCTCTACAAAAAAATTGCT..................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................TAGTAGAAAGTTACGACAATGG.......................................................................... | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TTTTTTGTAGAGATGGGT........................................................................................................................................................................... | 18 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..............................................................................AATATGAAAGTATCTGTGTAG....................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................TAGTAGAAAGTTACGACAA.......................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TAGTAGAAAGTTACGACAATGGG.......................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TGCAGGTGGATCACTTGAAAAA............................................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................ATTGTCGTAACTTTCTACTAA......................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................ATGAAACCCATCTCTACAAAAA............................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACCCATCTCTACAAAAAAATACCTC.................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................AATGGGATTCAAATAAGTGA........................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................CAGCAACACACACACACAGATACT............................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................GAAACCCATCTCTACAAAAAACGCC....................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................ATGAAACCCATCTCTACAAAATG........................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................GTTCTGTAGTCCACTAC.......................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ............................................................................................................................................................................................................................ATTGTGTTTGCAAACT.............. | 16 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |