uc011chn.1_intron_3_0_chr4_143033836

ATAATTGAAGCCAAATCCAATGATGTGTTGCCAGTTATAACAGGAAGACGGTAAGCAGTGCTCACTTCCTGAAGACCAGGCTTTGTTAGACATGTCGTGTTAACTCCTGTCAGAGGAGGCAAGGAGAATTCAGGTTTGATTTGGGAATATTTCTTTTGTTTTTTTTCTTTTCCTTTTTGGTAAGAAATACACATGGATGATATGATAGGGGACAATCTCAAAAAACTCCTGGAAGTCTCATGAATGTTTT ................................................................................................................(((((((.((((((((..((((...((..((....))..)).))))....)))))))).)))))))........................................................................ ............................................................................................................109.....................................................................181...................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR029054(GSM402329) MCF7_smallRNAseq. (cell line)	TAX577580(Rovira) total RNA. (breast)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR191590(GSM715700) 48genomic small RNA (size selected RNA from t. (breast)	SRR189785	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin)	SRR037934(GSM510472) 293cand4_rep3. (cell line)
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTG.........................................................................	24		4.00	0.00	-	1.00	3.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTGCC.......................................................................	26		4.00	0.00	3.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................TGTCGTGTTAACTCCTGTCAGAGGAGGCAAGGA.............................................................................................................................	33	1	3.00	3.00	-	-	-	3.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTGC........................................................................	24		3.00	0.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTAGT...............................................................................	20		2.00	0.00	-	-	1.00	-	1.00	-	-	-	-	-	-	-	-	-
......................................................................................................................................................TTCTTTTGTTTTTTTTCTTTTCCTTTGCC.......................................................................	29		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................TTTCTTTTCCTTTTTGGTAGTTG................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................TTTTTTCTTTTCCTTTTTGGTG....................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................TGTTTTTTTTCTTTTCGG............................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................TTTTTTTCTTTTCCTTTGCCT......................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................TTCTTTTCCTTTTTGGTGTTG.................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCTTG..................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTTCT.......................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTG.........................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCTT...................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................TTTTCTTTTCCTTTTTGGTTTC..................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTCATG....................................................................	24		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
...................................................................................................................................AGGTTTGATTTGGGAGC......................................................................................................	17		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTGTTC............................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTGGAG............................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................TTCTTTTGTTTTTTTTCTAAA...............................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................TTTTTCTTTTCCTTTTTGCAG....................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................TTTTCTTTTCCTTTTTGGTGTG..................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCGGAT...............................................................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-
............................................................................................................................................................TGTTTTTTTTCTTTTCCTTTTTGGTAGC..................................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................TTTCTTTTGTTTTTTTTCTGC................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTATT............................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................CTTTTGTTTTTTTTCTTGATG.............................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTGCC.....................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTCTAG..............................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTTTAG...........................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................AGGAGGCAAGGAGAATTA.......................................................................................................................	18		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTCTATG..........................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................TGTTTTTTTTCTTTTCCTTTGCC.......................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................GTTTTTTTTCTTTTCCTTGCT........................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTGCT.......................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCGT...................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................ATATTTCTTTTGTTTTTTCGG...................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCGTCC.........................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................CTTTTGTTTTTTTTCTTGCA..............................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTTTGCC.......................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTAATC....................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTATTG...........................................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGTGTG..................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................TTTTTTCTTTTCCTTTTTAGGC....................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................TTCTTTTGTTTTTTTTCTTGGT..............................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTAAT.....................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTCCCG....................................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................AGGAGGCAAGGAGAATTTT......................................................................................................................	19		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
......................................................................................................................................................TTCTTTTGTTTTTTTTCTTTTGGT............................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCT............................................................................	21	4	0.75	0.75	0.25	0.50	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTTCAAG.......................................................................	24	6	0.33	0.17	-	-	0.33	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCC.............................................................................	20	7	0.29	0.29	0.14	0.14	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTGCC.........................................................................	24	4	0.25	0.75	0.25	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTT...........................................................................	20	6	0.17	0.17	0.17	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCGAG..........................................................................	23	7	0.14	0.29	0.14	-	-	-	-	-	-	-	-	-	-	-	-	-

ATAATTGAAGCCAAATCCAATGATGTGTTGCCAGTTATAACAGGAAGACGGTAAGCAGTGCTCACTTCCTGAAGACCAGGCTTTGTTAGACATGTCGTGTTAACTCCTGTCAGAGGAGGCAAGGAGAATTCAGGTTTGATTTGGGAATATTTCTTTTGTTTTTTTTCTTTTCCTTTTTGGTAAGAAATACACATGGATGATATGATAGGGGACAATCTCAAAAAACTCCTGGAAGTCTCATGAATGTTTT
................................................................................................................(((((((.((((((((..((((...((..((....))..)).))))....)))))))).)))))))........................................................................
............................................................................................................109.....................................................................181...................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

TAX577580(Rovira)
total RNA. (breast)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)

SRR189785

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)

SRR037934(GSM510472)
293cand4_rep3. (cell line)

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTG.........................................................................

4.00

0.00

1.00

3.00

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTGCC.......................................................................

4.00

0.00

3.00

1.00

............................................................................................TGTCGTGTTAACTCCTGTCAGAGGAGGCAAGGA.............................................................................................................................

3.00

..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTGC........................................................................

3.00

0.00

3.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTAGT...............................................................................

2.00

0.00

1.00

......................................................................................................................................................TTCTTTTGTTTTTTTTCTTTTCCTTTGCC.......................................................................

2.00

0.00

2.00

...................................................................................................................................................................TTTCTTTTCCTTTTTGGTAGTTG................................................................

1.00

0.00

1.00

................................................................................................................................................................TTTTTTCTTTTCCTTTTTGGTG....................................................................

1.00

0.00

1.00

............................................................................................................................................................TGTTTTTTTTCTTTTCGG............................................................................

1.00

0.00

1.00

...............................................................................................................................................................TTTTTTTCTTTTCCTTTGCCT......................................................................

1.00

0.00

1.00

....................................................................................................................................................................TTCTTTTCCTTTTTGGTGTTG.................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCTTG..................................................................

1.00

0.00

1.00

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTTTTCT.......................................................................

1.00

0.00

1.00

..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTG.........................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCTT...................................................................

1.00

0.00

1.00

..................................................................................................................................................................TTTTCTTTTCCTTTTTGGTTTC..................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTCATG....................................................................

1.00

0.00

1.00

...................................................................................................................................AGGTTTGATTTGGGAGC......................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTGTTC............................................................................

1.00

0.00

1.00

.........................................................................................................................................................TTTTGTTTTTTTTCTTTGGAG............................................................................

1.00

0.00

1.00

......................................................................................................................................................TTCTTTTGTTTTTTTTCTAAA...............................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTTTCTTTTCCTTTTTGCAG....................................................................

1.00

0.00

1.00

..................................................................................................................................................................TTTTCTTTTCCTTTTTGGTGTG..................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCGGAT...............................................................................

1.00

0.00

1.00

............................................................................................................................................................TGTTTTTTTTCTTTTCCTTTTTGGTAGC..................................................................

1.00

0.00

1.00

.....................................................................................................................................................TTTCTTTTGTTTTTTTTCTGC................................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTATT............................................................................

1.00

0.00

1.00

........................................................................................................................................................CTTTTGTTTTTTTTCTTGATG.............................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTGCC.....................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTCTAG..............................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTTTAG...........................................................................

1.00

0.00

1.00

.................................................................................................................AGGAGGCAAGGAGAATTA.......................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTCTATG..........................................................................

1.00

0.00

1.00

............................................................................................................................................................TGTTTTTTTTCTTTTCCTTTGCC.......................................................................

1.00

0.00

1.00

.............................................................................................................................................................GTTTTTTTTCTTTTCCTTGCT........................................................................

1.00

0.00

1.00

..........................................................................................................................................................TTTGTTTTTTTTCTTTTCCTTTGCT.......................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGCGT...................................................................

1.00

0.00

1.00

..................................................................................................................................................ATATTTCTTTTGTTTTTTCGG...................................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCGTCC.........................................................................

1.00

0.00

1.00

........................................................................................................................................................CTTTTGTTTTTTTTCTTGCA..............................................................................

1.00

0.00

1.00

...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTTTGCC.......................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTAATC....................................................................

1.00

0.00

1.00

.......................................................................................................................................................TCTTTTGTTTTTTTTCTTTTATTG...........................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTTTCTTTTCCTTTTTGGTGTG..................................................................

1.00

0.00

1.00

................................................................................................................................................................TTTTTTCTTTTCCTTTTTAGGC....................................................................

1.00

0.00

1.00

......................................................................................................................................................TTCTTTTGTTTTTTTTCTTGGT..............................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTAAT.....................................................................

1.00

0.00

1.00

..............................................................................................................................................................TTTTTTTTCTTTTCCTTTTTCCCG....................................................................

1.00

0.00

1.00

.................................................................................................................AGGAGGCAAGGAGAATTTT......................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................TTCTTTTGTTTTTTTTCTTTTGGT............................................................................

1.00

0.00

1.00

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCT............................................................................

0.75

0.25

0.50

...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTTCAAG.......................................................................

0.33

0.17

0.33

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCC.............................................................................

0.29

0.14

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCTGCC.........................................................................

0.25

0.75

0.25

...........................................................................................................................................................TTGTTTTTTTTCTTTTCCTT...........................................................................

0.17

.........................................................................................................................................................TTTTGTTTTTTTTCTTTTCCGAG..........................................................................

0.14

0.29

0.14