ID: uc011ceo.1_intron_1_0_chr4_103180672_r.5p
GENE: SLC39A8(9)
chr4:103184118-103184367-


(1)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(4)
HELA 		(5)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATATATCTGTCTTCTAGTTTCCAGAGATGAATGATATGCTGAGAGAAAAGGTAACTGGAAGAAAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACTGGATTCACAGCCATTCTACTCATTACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCATTTAATAGATAAAAACATCTCCAAAAAGGATTTTGAAGCTGATCCTATT
...................................................((((..((((((..............))))))....(((((....)))))..))))...............................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...................................................TAACTGGAAGAAAAACCGA....................................................................................................................................................................................19111.0011.00--11.00----------------------------------------------
..........................................................................................AGAATGCTGGAATGTTAACT............................................................................................................................................2017.007.00-7.00-----------------------------------------------
......................................................................................................................................ACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCATT...............................................6917.007.007.00------------------------------------------------
....................................................................................................................................TTACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCATTT..............................................7216.006.006.00------------------------------------------------
....................................................................................................................................TTACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCAT................................................7014.004.00-----4.00-------------------------------------------
......................................................................................................................................ACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGG...................................................6514.004.004.00------------------------------------------------
...........................................................................................................................................GTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTT..............................................................4914.004.00-----4.00-------------------------------------------
.............................................................................................................................................................................................................................CCAAAAAGGATTTTGAAGCTGA.......2214.004.00----------4.00--------------------------------------
..................................................................................................................................................................................................................................AAGGATTTTGAAGCTATC......184.000.00--------4.00----------------------------------------
.............................................................................................................................................................................ATGGAAGATGGTGTTGTT...........................................................1813.003.00-3.00-----------------------------------------------
..................................................................CCGATTTCACCTTCTTCATG....................................................................................................................................................................2013.003.00------3.00------------------------------------------
..........................................................................................AGAATGCTGGAATGTTAACTGGA.........................................................................................................................................2313.003.00-3.00-----------------------------------------------
..........................................................................................AGAATGCTGGAATGTTAACTG...........................................................................................................................................2113.003.00---3.00---------------------------------------------
................................................AGGTAACTGGAAGAAAAAC.......................................................................................................................................................................................1912.002.00---1.00-----1.00---------------------------------------
......................................CTGAGAGAAAAGGTAACTGGAAGAA...........................................................................................................................................................................................2512.002.00-----------2.00-------------------------------------
.......................................................................................................................................................AATCGAATTGGAGTAATAGAAAATGG.........................................................................2612.002.00----------------2.00--------------------------------
.............................AATGATATGCTGAGAGAAAAGGTA.....................................................................................................................................................................................................2412.002.00----2.00--------------------------------------------
...........................................AGAAAAGGTAACTGGAAGAAA..........................................................................................................................................................................................2112.002.00--------------2.00----------------------------------
............................................................................................................................................................AATTGGAGTAATAGAAAATGGAAGATGGT.................................................................2912.002.00---------------2.00---------------------------------
.....................................................................................................................................................GAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCATT...............................................5412.002.002.00------------------------------------------------
..................................................................................................................................................................................................................................AAGGATTTTGAAGCTTTTT.....192.000.00------------------2.00------------------------------
..................................................................................................................................................................................AGATGGTGTTGTTAATCA......................................................182.000.00-----------------1.00----------1.00--------------------
..........................................................................................................................................TGTATGCAGGAGAAATCGAATTGG........................................................................................2411.001.00-------------1.00-----------------------------------
...........................................AGAAAAGGTAACTGGAAGAAAAACCGATTT.................................................................................................................................................................................3011.001.00---1.00---------------------------------------------
..................................................................................................................................................................................AGATGGTGTTGTTAATCATG....................................................201.000.00-----------------------------------------1.00-------
................................................................................................................................................................................................ATAAAGGCATTTAATAGATAAAAA..................................2411.001.00--------------------------------1.00----------------
......................AGAGATGAATGATATGCTGAGAG.............................................................................................................................................................................................................2311.001.00--------------------------------------1.00----------
.................................................................................TCATGATTCAGAATGCTGGAATGTT................................................................................................................................................2511.001.00---------------------1.00---------------------------
........................................................................................................TTAACTGGATTCACAGCCATTCTACTCATT....................................................................................................................3011.001.00----------------------------------1.00--------------
............................................................................................................................................................AATTGGAGTAATAGAAAATGGAAGATGGTG................................................................3011.001.00-------1.00-----------------------------------------
..................................................................................................................................................GGAGAAATCGAATTGGAGTAAT..................................................................................2211.001.00-1.00-----------------------------------------------
.............................................................................................................................................................................................TTAATAAAGGCATTTAACAG.........................................201.000.00------1.00------------------------------------------
.........................................................................................CAGAATGCTGGAATGTTAACT............................................................................................................................................2111.001.00----1.00--------------------------------------------
..........................................................................................................................................TGTATGCAGGAGAAATCGAATTG.........................................................................................2311.001.00---------------------------------1.00---------------
..................................................................................................................................................................................AGATGGTGTTGTTAATAAAGC...................................................211.000.00----------------------1.00--------------------------
.................................................................................................................................................AGGAGAAATCGAATTGGAGTAATA.................................................................................2411.001.00---1.00---------------------------------------------
................................................................................................................................................CAGGAGAAATCGAATTGGAGTAATAG................................................................................2611.001.00------------------------------------1.00------------
.....................................................................................................................................................................AATAGAAAATGGAAGATGGTGTTG.............................................................2411.001.00----1.00--------------------------------------------
...................................................................................................................................................................................GATGGTGTTGTTAATAAAGG...................................................2011.001.00-------------------------1.00-----------------------
.....................................GCTGAGAGAAAAGGTAACTGGAAG.............................................................................................................................................................................................2411.001.00---------------------------------------1.00---------
................................GATATGCTGAGAGAAAAGGTAA....................................................................................................................................................................................................2211.001.00-------------------1.00-----------------------------
...........................TGAATGATATGCTGAGAGAAAAGGT......................................................................................................................................................................................................2511.001.00-------1.00-----------------------------------------
..........................................................................................AGAATGCTGGAATGTTA...............................................................................................................................................1711.001.00------------1.00------------------------------------
..........................................................................................AGAATGCTGGAATGTTAACTGG..........................................................................................................................................2211.001.00---1.00---------------------------------------------
........................................................................................TCAGAATGCTGGAATGTTAACT............................................................................................................................................2211.001.00-----------------------------------1.00-------------
.......................................................TGGAAGAAAAACCGATTA.................................................................................................................................................................................181.000.00--------------------1.00----------------------------
.....................................................................................................................................................................AATAGAAAATGGAAGATGGTGTT..............................................................2311.001.00------------1.00------------------------------------
.......................................................................................................................................................AATCGAATTGGAGTAACAAG...............................................................................201.000.00----------------------------------------1.00--------
.............................................................................................................TGGATTCACAGCCATTCTACTCATT....................................................................................................................2511.001.00----1.00--------------------------------------------
................................................................................................................................................CAGGAGAAATCGAATTGGAGTAATA.................................................................................2511.001.00---1.00---------------------------------------------
.............................................................................................................................................................................................................................CCAAAAAGGATTTTGAAGCTG........2111.001.00------------1.00------------------------------------
..............................................................................................................................................................TTGGAGTAATAGAAAATGGAAGATGG..................................................................2611.001.00------------------------1.00------------------------
...............................................................................................................................................................TGGAGTAATAGAAAATGGAAGATGGTGTTGTTAA.........................................................3411.001.00-----------------------1.00-------------------------
........................................................................................................................................................ATCGAATTGGAGTAATAGAAAATGGAT.......................................................................271.000.00-------------------------------------1.00-----------
..................................................................................................................................................................................AGATGGTGTTGTTAATATGG....................................................201.000.00--------------------------------------------1.00----
....................CCAGAGATGAATGATATGCTGAGAGAAAAGGT......................................................................................................................................................................................................3211.001.00-------1.00-----------------------------------------
.............................AATGATATGCTGAGAGAAAAGGTT.....................................................................................................................................................................................................241.000.00-----------------------------1.00-------------------
...............................................AAGGTAACTGGAAGAAAAAC.......................................................................................................................................................................................2011.001.00----1.00--------------------------------------------
................................................................................................................ATTCACAGCCATTCTACTCATTACC.................................................................................................................2511.001.00---------------------------------------------1.00---
........................................GAGAGAAAAGGTAACTGGAAGAA...........................................................................................................................................................................................2311.001.00---1.00---------------------------------------------
....................................................................................................................ACAGCCATTCTACTCATT....................................................................................................................1811.001.00----1.00--------------------------------------------
....................................................................................................AATGTTAACTGGATTCACAGCCATTCTACTC.......................................................................................................................3111.001.00----1.00--------------------------------------------
.........................................................................................................................................TTGTATGCAGGAGAAATCGAATTGGAG......................................................................................2711.001.00----1.00--------------------------------------------
...............................................AAGGTAACTGGAAGAAAAACC......................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------
................................................................................................................ATTCACAGCCATTCTACTCATTACCTT...............................................................................................................2711.001.00---------------------------1.00---------------------
.................................................................................................................................................................................................................................AAAGGATTTTGAAGCTGAT......1911.001.00-------------1.00-----------------------------------
..............................................................................................................GGATTCACAGCCATTCTACTCATT....................................................................................................................2411.001.00---------------------1.00---------------------------
..............................................AAAGGTAACTGGAAGAAAAACC......................................................................................................................................................................................2211.001.00-------------------1.00-----------------------------
...................................................................................................................................................GAGAAATCGAATTGGAGTAA...................................................................................2011.001.00---------1.00---------------------------------------
...........................................................................................................................................................................AAATGGAAGATGGTGTTGTT...........................................................2011.001.00---1.00---------------------------------------------
...................................ATGCTGAGAGAAAAGGTAA....................................................................................................................................................................................................1911.001.00--------------------1.00----------------------------
..............................................................................................................................................................TTGGAGTAATAGAAAATGGAAGATGGT.................................................................2711.001.00-------1.00-----------------------------------------
........................AGATGAATGATATGCTGAGAGAA...........................................................................................................................................................................................................2311.001.00-----------1.00-------------------------------------
........................................................................................................................................................ATCGAATTGGAGTAATAGAA..............................................................................2011.001.00---------1.00---------------------------------------
...................................................................................................................................................................................................................................AGGATTTTGAAGCTGATCC....1911.001.00--------------------------1.00----------------------
.............................................................................................................................................................................................................................CCAAAAAGGATTTTGAAGCTGATC.....2411.001.00----1.00--------------------------------------------
..............................................................................................................................................................TTGGAGTAATAGAAAATGG.........................................................................1911.001.00---------1.00---------------------------------------
................................................AGGTAACTGGAAGAAAAA........................................................................................................................................................................................1820.500.50----------------------------------------------0.50--
.....................................................................................................................CAGCCATTCTACTCATT....................................................................................................................1720.500.50-------------0.50-----------------------------------
..............................................................................................................................................................................................................................CAAAAAGGATTTTGAAGCT.........1920.500.50---0.50---------------------------------------------
....................................................................................TGATTCAGAATGCTGGA.....................................................................................................................................................1720.500.50-----------------------------------------------0.50-
..............................................................................................................................................................................................................................CAAAAAGGATTTTGAAGC..........1820.500.50--------------0.50----------------------------------
.............................................AAAAGGTAACTGGAAG.............................................................................................................................................................................................1630.330.33------------------------------------------------0.33

Antisense strand
ATATATCTGTCTTCTAGTTTCCAGAGATGAATGATATGCTGAGAGAAAAGGTAACTGGAAGAAAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACTGGATTCACAGCCATTCTACTCATTACCTTGTATGCAGGAGAAATCGAATTGGAGTAATAGAAAATGGAAGATGGTGTTGTTAATAAAGGCATTTAATAGATAAAAACATCTCCAAAAAGGATTTTGAAGCTGATCCTATT
...................................................((((..((((((..............))))))....(((((....)))))..))))...............................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................AACCGATTTCACCTTCTTCATA.................................................................................................................................................................... 221.000.00-----------------1.00-------------------------------
................................................................TGAATCATGAAGAAGGTGAAATCGGTT............................................................................................................................................................... 2711.001.00-------1.00-----------------------------------------
.........................................AGAGAAAAGGTAACTGTTG.............................................................................................................................................................................................. 191.000.00-------------------------------1.00-----------------
.................................................................................................TGGAATGTTAACTGGAAG....................................................................................................................................... 181.000.00------1.00------------------------------------------
...........................................................................................................................................................................................TGTTAATAAAGGCATTG.............................................. 171.000.00------------------------------1.00------------------
....................................................................................................................TACAAGGTAATGAGTAGAATGGCTGT............................................................................................................ 2611.001.00-------1.00-----------------------------------------
.............................................................................................................................................................................ATGGAAGATGGTGTTGCG........................................................... 181.000.00------1.00------------------------------------------
...................................................................................................................CACAGCCATTCTACTTAGC.................................................................................................................... 191.000.00------------------------------------------1.00------
.................................................GGTAACTGGAAGAAAAACTGC.................................................................................................................................................................................... 211.000.00-------------------------------------------1.00-----